HG10011782 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011782
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 11612043 .. 11612264 (+)
RNA-Seq ExpressionHG10011782
SyntenyHG10011782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTCTTAATGATGATTGATGTGAACCAAGCAATATCAATTACCATGCCTCAAGGTCCTATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATCCAAGCTATGGTGACCTCAAGGAAGAAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCAATGTAAAATTGAGCTTCAAGATGAATATGCATTAAATGCATTCTAA

mRNA sequence

ATGATGGTCTTAATGATGATTGATGTGAACCAAGCAATATCAATTACCATGCCTCAAGGTCCTATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATCCAAGCTATGGTGACCTCAAGGAAGAAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCAATGTAAAATTGAGCTTCAAGATGAATATGCATTAAATGCATTCTAA

Coding sequence (CDS)

ATGATGGTCTTAATGATGATTGATGTGAACCAAGCAATATCAATTACCATGCCTCAAGGTCCTATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATCCAAGCTATGGTGACCTCAAGGAAGAAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCAATGTAAAATTGAGCTTCAAGATGAATATGCATTAAATGCATTCTAA

Protein sequence

MMVLMMIDVNQAISITMPQGPITRSRAKKLQQALITHIQAMVTSRKKIVEDVGVLPYMQCKIELQDEYALNAF
Homology
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BLAST of HG10011782 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 9.3e-14
Identity = 49/66 (74.24%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 8   DVNQAISITMPQGPITRSRAKKLQQALITHIQAMVTSRKKIVEDVGVLPYMQCKIELQDE 67
           D N+  SI M QG I RSRAKKL QALITHIQAMVTS K IVEDV VL YM CK+E QDE
Sbjct: 95  DANKGTSIIMSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDE 154

Query: 68  YALNAF 74
            ALNAF
Sbjct: 155 DALNAF 159

The following BLAST results are available for this feature:
BLAST of HG10011782 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900633.19.3e-1474.24uncharacterized protein LOC120087799 [Benincasa hispida][more]
BLAST of HG10011782 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10011782 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10011782 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011782.1HG10011782.1mRNA