HG10011774 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011774
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Location	Chr01: 11335134 .. 11336722 (-)
RNA-Seq Expression	HG10011774
Synteny	HG10011774

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAGCGTGGCTTTGCTTCCTCTGCTCACGACGATGCTCGTAAGTCTCTCTCTCTATCTCGGTATTTTTTTATTGTGATCGTGTATGCGCTGAAATTGGTTCACGTCTCTCTCGATTTGCCTTATTTTATTGACGGATTTTTTTTTCTTGTTACTTTCGGCAACTTTGTTTAGTCTATTGTATGCTTATTTTATTGATTTTCCTGTCCTGTTTTTCATCTGACGAAGGGGGGGAAAGAAGGCTGATGTTGATTATTGAATCATGTTAAGAAATTTGGTCTAAAATTTGATTGGATGTTTTTTTGTTCCTTTTAGATTGGAAGTCTAGCAAAGGGAGATGTTTTGAAATTTGAATTCAGATTTAAATGTTATTCAATAGTTTTGTTTAATCATCGGATGGGAGTATATATATTATATTTGACAATTTTCCAGTCGCTAAGGAGTGGATTTGATTTAAAGCTGGTAGGAAAGAAGAAGGCAAGAGTTTTTCTTGGTCTATTACTGAGTGGCAATACTATAATTCTTGATTTCTATAATTGCATGAAAAATGCTCTAGAAAGTCTTGGATTTTGTGGTAGGTTTAATTTACTTCTGATTTCGAATGAGTAAGACATGAAGGAAAGGAAACACAAATGCAGTAAATTTATTAGAGGGTTACGTACATTTATCAGAAGGTTAAGACCTTTAATCAATAAATTTTCCTCCGGGTTCGGTCGTGGAAGTTTTTTCACCTATAATCTTACGCCTGCTTCTTCTTTAATTAATTCTTTTCTGGGTAGAGGTCATGGCAGTTTTTCCACCTCTGATCATATGCCTGATTCTTCTTTCTCCCTCCCTTCCCCCCATCTTTTCTCTTTCTTTCTTTCTTTTTCTCACACGTTCCTCGTGGAGGCGTGGGTGGGGGGGACAAATTTCTTCTGTTTTTGGGGCGGGTATCTGTAATCTGTTGGAGCTAAGCCAATTCAGTTTTGTGAATTTATTTTCTAATAATCCACTATAACATATACTTTTGATGCCTTGTTACGTTTGTTGGGTACAAGTATGTATTGGATTTTTAAATACTATTTCAGACTTATATTGTACAAGCAAGTAGAAAGGAAAAACTGTATGCAGGAGTGCCATGATGCTTTTACTCCTTAAGTTTGATCTCTCACCTTTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCTCTACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTATAACTTCAGTCAATTTATACTTTTTCCTCCACTTCTCAGTAATTGCATTATGGAATTATGCATTGTACTCTCATGTGTTACCCATTTATTTTTGTTTGGGTTTCATTGTATGCAGGCATATCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTCATTACAAGTTCTATGACATCTTTTATATCTCTTTGCAATTGCTATTTGGGTTTTGA

mRNA sequence

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAGCGTGGCTTTGCTTCCTCTGCTCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCTCTACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTCATTACAAGTTCTATGACATCTTTTATATCTCTTTGCAATTGCTATTTGGGTTTTGA

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAGCGTGGCTTTGCTTCCTCTGCTCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCTCTACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTCATTACAAGTTCTATGACATCTTTTATATCTCTTTGCAATTGCTATTTGGGTTTTGA

Protein sequence

MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGKFPLHYKFYDIFYISLQLLFGF

Homology

[Close]

BLAST of HG10011774 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-41
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDARETAKWEKITYAGI +CS LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGKFPLHY 95
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGK P HY
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY 94

[Close]

BLAST of HG10011774 vs. NCBI nr
Match: XP_038905594.1 (cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 4.6e-41
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATC+ LAFY
Sbjct: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. NCBI nr
Match: XP_011650608.1 (cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE8650204.1 hypothetical protein Csa_009645 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 6.7e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 6.7e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMA+IRSNLLRAA+RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA C+TLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. NCBI nr
Match: XP_008450167.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMASIRSN LRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-26
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]

BLAST of HG10011774 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.2e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMA+IRSNLLRAA+RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA C+TLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. ExPASy TrEMBL
Match: A0A1S3BPM0 (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.5e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMASIRSN LRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA C+TLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. ExPASy TrEMBL
Match: A0A0A0L3I0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 3  MASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNL 62
          MASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWG 89
          SKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWG 86

[Close]

BLAST of HG10011774 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFY 60
          MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDARETAKWEKITYAGI +CS LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of HG10011774 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-27
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]

BLAST of HG10011774 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PP          EFPWG
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWG 79

The following BLAST results are available for this feature:

BLAST of HG10011774 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015416.1	2.1e-41	91.49	Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ...	[more]
XP_038905594.1	4.6e-41	97.73	cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]	[more]
XP_011650608.1	6.7e-40	94.32	cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE...	[more]
XP_023001309.1	6.7e-40	94.32	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]
XP_008450167.1	1.1e-39	94.32	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]

BLAST of HG10011774 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	2.0e-26	67.42	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10011774 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMD3	3.2e-40	94.32	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A1S3BPM0	5.5e-40	94.32	cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1FPI8	9.4e-40	94.32	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A0A0L3I0	2.7e-39	94.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1	[more]
A0A6J1ERW3	3.6e-39	93.18	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]

BLAST of HG10011774 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37830.1	1.4e-27	67.42	cytochrome c oxidase-related	[more]
AT4G37830.2	1.8e-19	58.43	cytochrome c oxidase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..99 e-value: 8.8E-14 score: 53.2
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..37
None	No IPR available	PANTHER	PTHR11504:SF0	CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIAL	coord: 1..90
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011774.1	HG10011774.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity