HG10011715 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011715
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cytochrome c oxidase copper chaperone
Location	Chr01: 9850621 .. 9850863 (+)
RNA-Seq Expression	HG10011715
Synteny	HG10011715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTCTACCTGTTGTAAACTCTTCATCGACCATAGCTTTGCCGGAATCGAAACTTGACCAAGGGTCAGCAGTTGTCAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATCTGTTGTGCCTGCCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTGGAGCATGGTGAAGAAGCGTGTGGAAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCGGAAGGATTCAATGTCTGA

mRNA sequence

ATGGGTGGTCTACCTGTTGTAAACTCTTCATCGACCATAGCTTTGCCGGAATCGAAACTTGACCAAGGGTCAGCAGTTGTCAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATCTGTTGTGCCTGCCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTGGAGCATGGTGAAGAAGCGTGTGGAAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCGGAAGGATTCAATGTCTGA

Coding sequence (CDS)

ATGGGTGGTCTACCTGTTGTAAACTCTTCATCGACCATAGCTTTGCCGGAATCGAAACTTGACCAAGGGTCAGCAGTTGTCAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATCTGTTGTGCCTGCCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTGGAGCATGGTGAAGAAGCGTGTGGAAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCGGAAGGATTCAATGTCTGA

Protein sequence

MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFNV

Homology

[Close]

BLAST of HG10011715 vs. NCBI nr
Match: KAA0060636.1 (cytochrome c oxidase copper chaperone 2-like [Cucumis melo var. makuwa] >TYK02235.1 cytochrome c oxidase copper chaperone 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 5.0e-37
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESKLDQ S VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKLDQASTVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. NCBI nr
Match: XP_038905291.1 (cytochrome c oxidase copper chaperone 1-like [Benincasa hispida] >XP_038905292.1 cytochrome c oxidase copper chaperone 1-like [Benincasa hispida] >XP_038905293.1 cytochrome c oxidase copper chaperone 1-like [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 5.0e-37
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESK DQG+AVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKHDQGAAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. NCBI nr
Match: XP_004133710.1 (cytochrome c oxidase copper chaperone 2 [Cucumis sativus] >XP_004133711.1 cytochrome c oxidase copper chaperone 2 [Cucumis sativus] >XP_011650564.1 cytochrome c oxidase copper chaperone 2 [Cucumis sativus] >XP_031737625.1 cytochrome c oxidase copper chaperone 2 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESKLDQ S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. NCBI nr
Match: KGN56261.2 (hypothetical protein Csa_011168 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
           MGGLPVVNSSS IALPESKLDQ S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 97  MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 156

Query: 61  ACGKWIEAHRKCLRAEGFNV 81
           ACGKWIEAHRKCLRAEGFNV
Sbjct: 157 ACGKWIEAHRKCLRAEGFNV 176

[Close]

BLAST of HG10011715 vs. NCBI nr
Match: XP_016901211.1 (PREDICTED: LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESKLDQ S VVKSTPDGKP KKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKLDQASTVVKSTPDGKPXKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. ExPASy Swiss-Prot
Match: Q9LJQ9 (Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana OX=3702 GN=COX17-1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-20
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 29 STPDGKPKKKICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFNV 81
          ++ + KPKK+ICCACPDTKKLRDECIVEHGE AC KWIEAH+ CLRAEGFNV
Sbjct: 23 ASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74

[Close]

BLAST of HG10011715 vs. ExPASy Swiss-Prot
Match: Q94FT1 (Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana OX=3702 GN=COX17-2 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-19
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 20 LDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFN 79
          LD+ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE AC KWIEAH  CLR+EGF 
Sbjct: 13 LDKPSKDVVAT-ETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHILCLRSEGFK 72

Query: 80 V 81
          V
Sbjct: 73 V 72

[Close]

BLAST of HG10011715 vs. ExPASy Swiss-Prot
Match: Q54ID0 (Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum OX=44689 GN=cox17 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-13
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 29 STPDGKPKKKICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFNV 81
          +T    PKKK+CCACP+TKK+RDECIV +GEE C   IE H+ CLR EGF+V
Sbjct: 9  TTEVAAPKKKMCCACPETKKVRDECIVANGEEKCAALIELHKVCLRKEGFDV 60

[Close]

BLAST of HG10011715 vs. ExPASy Swiss-Prot
Match: P81045 (Cytochrome c oxidase copper chaperone OS=Sus scrofa OX=9823 GN=COX17 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-12
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 24 SAVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFNV 81
          +A + + P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH++C+RA GF +
Sbjct: 4  AAAIPAPPESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 62

[Close]

BLAST of HG10011715 vs. ExPASy Swiss-Prot
Match: P56394 (Cytochrome c oxidase copper chaperone OS=Mus musculus OX=10090 GN=Cox17 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 24 SAVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFNV 81
          +A   + P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH++C+RA GF +
Sbjct: 5  AAASPAPPEAQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63

[Close]

BLAST of HG10011715 vs. ExPASy TrEMBL
Match: A0A5D3BSU0 (Cytochrome c oxidase copper chaperone 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00310 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESKLDQ S VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKLDQASTVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. ExPASy TrEMBL
Match: A0A0A0L5D1 (Cytochrome c oxidase copper chaperone OS=Cucumis sativus OX=3659 GN=Csa_3G105960 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.2e-37
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESKLDQ S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. ExPASy TrEMBL
Match: A0A1S4DYZ5 (LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 OS=Cucumis melo OX=3656 GN=LOC103493331 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPVVNSSS IALPESKLDQ S VVKSTPDGKP KKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVVNSSSAIALPESKLDQASTVVKSTPDGKPXKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. ExPASy TrEMBL
Match: A0A6J1CNF2 (cytochrome c oxidase copper chaperone 1-like OS=Momordica charantia OX=3673 GN=LOC111012862 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPV N SS +ALPESKLDQGSAVVKST DGKPKK+ICCACP+TKKLRDECIVEHGEE
Sbjct: 1  MGGLPVGNGSSALALPESKLDQGSAVVKSTTDGKPKKRICCACPETKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
          ACGKWIEAHRKCLRAEGFNV
Sbjct: 61 ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of HG10011715 vs. ExPASy TrEMBL
Match: A0A6J1IMZ6 (cytochrome c oxidase copper chaperone 2 OS=Cucurbita maxima OX=3661 GN=LOC111477894 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.3e-32
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MGGLPVVNSSSTIALPESKLDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60
          MGGLPV NSS      ESKL+QGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1  MGGLPVGNSS------ESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 61 ACGKWIEAHRKCLRAEGFNV 81
           CGKWIEAHRKCLRAEGFNV
Sbjct: 61 FCGKWIEAHRKCLRAEGFNV 74

[Close]

BLAST of HG10011715 vs. TAIR 10
Match: AT3G15352.1 (cytochrome c oxidase 17 )

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-21
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 29 STPDGKPKKKICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFNV 81
          ++ + KPKK+ICCACPDTKKLRDECIVEHGE AC KWIEAH+ CLRAEGFNV
Sbjct: 23 ASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74

[Close]

BLAST of HG10011715 vs. TAIR 10
Match: AT1G53030.1 (Cytochrome C oxidase copper chaperone (COX17) )

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-20
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 20 LDQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEACGKWIEAHRKCLRAEGFN 79
          LD+ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE AC KWIEAH  CLR+EGF 
Sbjct: 13 LDKPSKDVVAT-ETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHILCLRSEGFK 72

Query: 80 V 81
          V
Sbjct: 73 V 72

The following BLAST results are available for this feature:

BLAST of HG10011715 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060636.1	5.0e-37	96.25	cytochrome c oxidase copper chaperone 2-like [Cucumis melo var. makuwa] >TYK0223...	[more]
XP_038905291.1	5.0e-37	96.25	cytochrome c oxidase copper chaperone 1-like [Benincasa hispida] >XP_038905292.1...	[more]
XP_004133710.1	6.6e-37	95.00	cytochrome c oxidase copper chaperone 2 [Cucumis sativus] >XP_004133711.1 cytoch...	[more]
KGN56261.2	6.6e-37	95.00	hypothetical protein Csa_011168 [Cucumis sativus]	[more]
XP_016901211.1	2.5e-36	95.00	PREDICTED: LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 [Cucumis...	[more]

BLAST of HG10011715 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJQ9	4.4e-20	80.77	Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana OX=3702 GN=COX17...	[more]
Q94FT1	3.8e-19	73.77	Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana OX=3702 GN=COX17...	[more]
Q54ID0	1.4e-13	63.46	Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum OX=44689 GN=co...	[more]
P81045	1.2e-12	54.24	Cytochrome c oxidase copper chaperone OS=Sus scrofa OX=9823 GN=COX17 PE=1 SV=1	[more]
P56394	4.5e-12	54.24	Cytochrome c oxidase copper chaperone OS=Mus musculus OX=10090 GN=Cox17 PE=1 SV=...	[more]

BLAST of HG10011715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSU0	2.4e-37	96.25	Cytochrome c oxidase copper chaperone 2-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0L5D1	3.2e-37	95.00	Cytochrome c oxidase copper chaperone OS=Cucumis sativus OX=3659 GN=Csa_3G105960...	[more]
A0A1S4DYZ5	1.2e-36	95.00	LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 OS=Cucumis melo OX=...	[more]
A0A6J1CNF2	3.0e-35	91.25	cytochrome c oxidase copper chaperone 1-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1IMZ6	5.3e-32	88.75	cytochrome c oxidase copper chaperone 2 OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]

BLAST of HG10011715 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15352.1	3.2e-21	80.77	cytochrome c oxidase 17	[more]
AT1G53030.1	2.7e-20	73.77	Cytochrome C oxidase copper chaperone (COX17)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1130	CytochromE C oxidase copper chaperone	coord: 15..80 e-value: 1.5E-25 score: 91.3
None	No IPR available	PANTHER	PTHR16719:SF0	CYTOCHROME C OXIDASE COPPER CHAPERONE	coord: 6..80
None	No IPR available	PROSITE	PS51808	CHCH	coord: 40..80 score: 12.541271
IPR007745	Cytochrome c oxidase copper chaperone	PFAM	PF05051	COX17	coord: 36..80 e-value: 6.9E-20 score: 71.1
IPR007745	Cytochrome c oxidase copper chaperone	PANTHER	PTHR16719	CYTOCHROME C OXIDASE COPPER CHAPERONE	coord: 6..80
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 29..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011715.1	HG10011715.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0016531	copper chaperone activity
molecular_function	GO:0005507	copper ion binding