HG10011530 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011530
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DUF4228 domain protein
Location	Chr01: 6906867 .. 6907181 (+)
RNA-Seq Expression	HG10011530
Synteny	HG10011530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTGTACGAGCAACAAATATTTGGCCGACACAATGCCGATGAGCGATGAGGACGAGGAAGCGGTGGAGACAGTGAGGAGGAGGCTGATTGCCGATGACGGAGCTCAAAAATCTTCGGCAAGTACCACGATGGAGCTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAAGAGCTGCCAGTGAGGGAGCTGTTATCGCAGTTAATAGACGTCGGGGATGCGTTCGAGAGTACTCACCGGCGATCATGGCAGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

mRNA sequence

ATGGGAAATTGTACGAGCAACAAATATTTGGCCGACACAATGCCGATGAGCGATGAGGACGAGGAAGCGGTGGAGACAGTGAGGAGGAGGCTGATTGCCGATGACGGAGCTCAAAAATCTTCGGCAAGTACCACGATGGAGCTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAAGAGCTGCCAGTGAGGGAGCTGTTATCGCAGTTAATAGACGTCGGGGATGCGTTCGAGAGTACTCACCGGCGATCATGGCAGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

Coding sequence (CDS)

ATGGGAAATTGTACGAGCAACAAATATTTGGCCGACACAATGCCGATGAGCGATGAGGACGAGGAAGCGGTGGAGACAGTGAGGAGGAGGCTGATTGCCGATGACGGAGCTCAAAAATCTTCGGCAAGTACCACGATGGAGCTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAAGAGCTGCCAGTGAGGGAGCTGTTATCGCAGTTAATAGACGTCGGGGATGCGTTCGAGAGTACTCACCGGCGATCATGGCAGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

Protein sequence

MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN

Homology

[Close]

BLAST of HG10011530 vs. NCBI nr
Match: XP_038904231.1 (uncharacterized protein LOC120090574 [Benincasa hispida])

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-42
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSDEDEEAVETVRRRL+  DGA+K SA+TT ELKIRITKRELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDEDEEAVETVRRRLVVHDGARKCSANTTTELKIRITKRELEKL 60

Query: 61  LSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           LSKVDVEELPV ELLSQLIDVGDAFESTH+RSW+PSLQSIPEVN
Sbjct: 61  LSKVDVEELPVTELLSQLIDVGDAFESTHQRSWRPSLQSIPEVN 104

[Close]

BLAST of HG10011530 vs. NCBI nr
Match: XP_008463409.1 (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 4.5e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSD++EE  E +RRRL+ +  AQK SASTT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           L KVD+EELPV ELLS+LIDVGDAFESTHRRSWQPSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of HG10011530 vs. NCBI nr
Match: XP_031739098.1 (uncharacterized protein LOC116402843 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MGNCTSNKYLADT-MPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEK 60
           MGNCTSNKYLA+T +PMSD+DEE  E +RRRL+  +GAQK SASTT ELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           LL KVDVEELPV ELLS+LIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of HG10011530 vs. NCBI nr
Match: KAG6577418.1 (hypothetical protein SDJN03_24992, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 78/103 (75.73%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMS E+EE VETV+R+L ADDGA + + +TT E+KIR+TKRELEKL
Sbjct: 1   MGNCTSNKYLAETMPMS-EEEEVVETVKRKLNADDGASRGTTTTTTEVKIRMTKRELEKL 60

Query: 61  LSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEV 104
           LSKV+VEELPV ELL Q+I+VGD  ESTHRRSW+PSLQSIPE+
Sbjct: 61  LSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPEL 102

[Close]

BLAST of HG10011530 vs. NCBI nr
Match: KAE8650133.1 (hypothetical protein Csa_011778 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-33
Identity = 79/99 (79.80%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MGNCTSNKYLADT-MPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEK 60
          MGNCTSNKYLA+T +PMSD+DEE  E +RRRL+  +GAQK SASTT ELKIRITKRELEK
Sbjct: 1  MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61 LLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQ 99
          LL KVDVEELPV ELLS+LIDVGD FESTH+RSW+PSLQ
Sbjct: 61 LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 99

[Close]

BLAST of HG10011530 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSD++EE  E +RRRL+ +  AQK SASTT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           L KVD+EELPV ELLS+LIDVGDAFESTHRRSWQPSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of HG10011530 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKL 60
           MGNCTSNKYLA+TMPMSD++EE  E +RRRL+ +  AQK SASTT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           L KVD+EELPV ELLS+LIDVGDAFESTHRRSWQPSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of HG10011530 vs. ExPASy TrEMBL
Match: A0A0A0L2D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.4e-37
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MGNCTSNKYLADT-MPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEK 60
           MGNCTSNKYLA+T +PMSD+DEE  E +RRRL+  +GAQK SASTT ELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           LL KVDVEELPV ELLS+LIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of HG10011530 vs. ExPASy TrEMBL
Match: A0A6J1J7P7 (uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.1e-33
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSS---ASTTMELKIRITKREL 60
           MGNCTSNKYLA+TMPMS E+EE VET++R+L ADDGA +SS    +TT E+KIR+TKREL
Sbjct: 1   MGNCTSNKYLAETMPMS-EEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKREL 60

Query: 61  EKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEV 104
           EKLLSKV+VEELPV ELL QLI+VGD  ESTHRRSW+PSLQSIPE+
Sbjct: 61  EKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 105

[Close]

BLAST of HG10011530 vs. ExPASy TrEMBL
Match: A0A6J1DBT0 (uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019048 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 84/108 (77.78%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADD---GAQKSSA-STTMELKIRITKRE 60
           MGNCTSNKY A+  PMSDE EEAVETV+RRLI DD   GA +SS+ + T E+KIRITKRE
Sbjct: 1   MGNCTSNKYSAEISPMSDE-EEAVETVKRRLIPDDDGHGALRSSSLARTTEVKIRITKRE 60

Query: 61  LEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 105
           LEKLL KVDVEELPV ELLSQLIDVGDAFESTHRRSW+PSLQ+I E+N
Sbjct: 61  LEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 107

[Close]

BLAST of HG10011530 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 1   MGNCTSNKYLADTMPMSDEDEEAVETVRRR---LIADD---------------GAQKSSA 60
           MGNC        T    D++    +  RRR   ++ DD                   SS+
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  STTMELKIRITKRELEKLLSKVDVEELPVRELLSQLI-DVGDAF------ESTHRRSWQP 105
           S   E+KIRITK+ELE L+  + ++ L   E+LS+LI + GD         + H + W+P
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKP 120

[Close]

BLAST of HG10011530 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 47.8 bits (112), Expect = 6.4e-06
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 41  SASTTMELKIRITKRELEKLLSKVDVEELPVRE--LLSQLIDVGDAFESTHRRSWQPSLQ 100
           S+  + E+KIR+TK++L  LLSKV+V +L  ++      +++     E+  +R W+P LQ
Sbjct: 50  SSVPSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQ 109

Query: 101 SIPEVN 105
           SIPEVN
Sbjct: 110 SIPEVN 115

The following BLAST results are available for this feature:

BLAST of HG10011530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904231.1	2.3e-42	89.42	uncharacterized protein LOC120090574 [Benincasa hispida]	[more]
XP_008463409.1	4.5e-38	81.73	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF42...	[more]
XP_031739098.1	1.1e-36	80.95	uncharacterized protein LOC116402843 [Cucumis sativus]	[more]
KAG6577418.1	1.5e-33	75.73	hypothetical protein SDJN03_24992, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8650133.1	4.4e-33	79.80	hypothetical protein Csa_011778 [Cucumis sativus]	[more]

BLAST of HG10011530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTQ9	2.2e-38	81.73	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A1S3CJ77	2.2e-38	81.73	uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=...	[more]
A0A0A0L2D8	5.4e-37	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1	[more]
A0A6J1J7P7	8.1e-33	75.47	uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315...	[more]
A0A6J1DBT0	1.1e-32	77.78	uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of HG10011530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	2.0e-07	32.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	6.4e-06	40.91	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011530.1	HG10011530.1	mRNA