HG10011431 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011431
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	Chr01: 5941417 .. 5949062 (+)
RNA-Seq Expression	HG10011431
Synteny	HG10011431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGAAGGTGTTGGCAAAGAAGGCATTGAATGGATTATGAACCTTTCAGACGTACCCATGAAGCTCCCACCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATGTACTCTTCTTTTCCCTTTCCCATATTTTGTTTGTTTCATCATTTCGCTCTTTCTTATTCAAATTCTAAGAATTCTTTTCAATTCATGGAAGTATAAATTTTGTATTGTTTTATTGCTCAAGCTTAGTAGAAGCTCGAGTAAATATCCTTTTTAGCATGTTTACTGTAGTTGAATGTTAAATGTGAACCTATTAAATTACGTTTCATGCTTCTGGAGGGAAGTGAATTTAATGGAATCTGTGTACTTTACTTGATTTTTATTCATAGTACGTATGTTATTTTTTATGTAATAATTGGCTGGCTTTAATTTTCTTCTCATGGTCCGTGTGGAAAACGTGGACTTCTGTAGACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGCGTTGATAACAGTTTACGTCTGGATTATTTTCGCAACAACTTTAAAGTTGAAGTTATTGATCTCAGAGAGGATGACATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATACTGATAGCCGAGGTAGGTAATCAAGCACAATGAATTAAAACTATATACAATTGATTATTTTAGTGAGACTTTGCTGAGTTCTTGGTGTTTACCTCCTTGTCATCACTTCTGGTGTTGTATTGTGTGTCCAATATATCAAAAAGCTTGAGATTTAGCCCAAGCTACAAGTTCTTAGCTTTCTTTGCTTCATGTGAAGCTTGTGCTTCGATAGGGAAAAACCGTATGCTTTTAATGACCATGTATGAATGTTTGGAGTCTTTGTGGCTTATGAACTTGTTATACGAATTACGTTGGTTGTTGTCTGTTGTTCAACATCTGTAAGATTGTTCATGTATTCAAAGCTAATAAAATGGGGATATTGGTGGTGATGGCTTGGGATGTTTAGGGTTAGTCTTGTTAGACATGACCCAGGGTGCAAGCCCACACTTTGGTTAAAATGAAAAAAAAATTGTGTGTGTGTGTGTGCTTTTTTTTAAATGGAAACGAGACTTTTTCATTGAATTAATGAAATAAGTCGAATGCTCAAATTACAAGATACAAAGCAAAATGAAACTTAACAACGCTTGAAAATACAAGAACAACACTAGACCAATACTACTGAAAAACCAAACCTTCTAAAATAAGAGGCTTTGCTAAACAACGAAACCAATAATCAAGAGACCATTCACTAACATCCAGCAGAGTGCAAATCTTGAACTTCAAAAGAAATAGAACATTGAGAGCAAAAGAGTTTTGAATGTGAACTTGAAGCATGATTAGCTGGTCCGAATCCAATACAACAACCTTACTAGAAGCCGAAACATCCGAGGATCAACTTTTGAACCAACCAAACACAAAACTTCCAAAAACTAAACTTTAAAAACCTGTGGAGGATGCTTGCATATTCTTAAACAAAGGGGTAGTCCGATGAGTCTTCATAAAAACAGAACCCAACGAAGATTAACGCAGTAATTTGGTTGTAAAGAATAGGCACTAAAACTTCAAGCTAATAAAGAAGAACTCCAACTTTTACGCCGAAGATAATCACAAACCAAAAAGTCTCTTCCATTTAAAAAATCCTTTCAAATCCTCAAAGATTCCTTTATCAAGAATTTCAAAGGTAACGTCTTTCTCTCTATCCACTAAGTTGACACCCCTCCAACAACCTTTTCCTTGTATTATGAACTACTATTGGATCTTTAATGAAGACTAAACAAAAATCACAATCCCAATAGAGCCCAAACATCTACAACATATTTAAACCAAGAACGATACCACGAGCATCAATTAGTGAATGCAGATGTTGTGGAATTTCACTCCTATCAAGAGGAGTAAATAAGGAAACATCAGCCTTACCAATCGAATGAGCATCCTCTGATTGAAATAATTGACAAATGTCATTACCAAAACCATCAACGGTCTCTTCTTCAACTTGTAATTCCTCTGTTTCATAATTTTCTAGCTCTTCACTGCTAGCACTAGTTAATGAATCTTCGTTCGAATCCCCATTCGATCCTTGTTTTTTGTGGCAAAAGTTGCTTGGAATACTAGCTAGGAGTCCTCTCACAAAACTTACGTTTGAGCCAGGGATTTTAAAATTCGAATGAAAAAAAGAAGGATGATTCGAAGAAGTGTTGTCAGCCCTTTGGTCACAATCATGGACCAAGAGTTTAGAAACAAAGTCTTTTTCCTGGAAAAATGCTTGGGAAAAGGCTTGAGCAAGTCTGAATGCTTCTTTGATTTCAACGGTTGAGAGTCGCGCTCTGGGGGAGAAGAAACATAATTACTTTTGCACTGGAATAAAGAAGGGGCTTGTCTAAAGATTAGTTCAATGTCTTTTTTGGAAAGGATCTAAAGATTCAAACTCTAATCCTTTATCTTGTACAACTTGATTCAATCGGACAACTGGGTTAGTAAAATCCTTAACAAATAAGTCACCTTTCACCCTTGAGGGAGGATCAATTAGTTCAATGTCTCCAAAATTCAGAAAAATAGTTCCACACTTCTCATCCGCAATTTCTATAGTTGAAGGTATGAAACCACATAAATTTCTTTTAACTTGAATCTTAGCTTCAGAAACGTTAAGAAGATTCAAAAGTATATGTTGCAATATCTTCCAGGCCTCCAAAATAGGCTCCAATAGCTTCAAAAATTTCCCTACACCAATAGTCTAACGGGAAATTCTTGATTGAGATCCATCCTCCATATCCTGTTGAATACAACGGCTAGCTATGCACAAGCTTGTTCTACTTCTCAAAGTTTAGATAAAACGAACCACAAATCTGCCATTTGCCCGGTTCCTCGATCAATTCCTCGAGAGTTCCTTGGTCCAGTTTCAATAAGGCATTTTTCGCAAATAGAGGATTGACAATGACATCCGTTTGAAAGTAATGTTTTAACGTTTTAGCTATTTTCGACCAGTCAATAAACTCAAACAATCTGGAAACTATACACAAGTTACTAAAATCTTCTTGAAAAATATCAGAGCTCTTTATCACCCAATAATGGATTTTACTCTGTTTATCGGGTACTAAAACAGGGCCTTGCTTCAGACGTGGAAAAGTTGCTGATTCCATGCTCAGTTTCTTCGATTGGAAAATAGAGCTTTGTTGAGCTTTTGAATACTTCACAATGTCCACGTAGTATTTTCCCTAATTTGGCGAAACAACATTTGCAGGCTCCCTTCTCGGAATAAATGGCTTAGCAGAAGCTTCAAAATTTTTCTAAAAATCTAAGAGCATTAACGCAAAAGAATACCAACCTTGCATTGATTCTCTGGAAGGAATTTGAATAAAGTATCTTCCCCCAAAAGATGACCAAACAACGCATCTTAATAATCCAACCTGAGGAGTTGGGGAACTTACACAATTTTGTGGCACTTGAACCATCATGGCCGTTCCTCACAAAGAATCGTGAAGCAGAACCCTTGATCGTATCTAAAATATTTTCAACAAACCAACTGTGCTGAGACTTCGAGAGGAGAGTGAGCGGATATAGGCCTCATCCTTTTGTTTGGGGTGCAAGTGGTGGTTTGAGACCTTTGCAAAATCTTTGGAAAGCTATCCCTAATGTTTTCCTTTATTCTCTCAATTTATCATTTGCTCTGCTGGTGAAGTCTTGAAGGCTTATTTTTGGGAGGATCCCTAGTGGGGGATGAACCTTTTTGTGCTTTGTTTTGGAGGTAATATCTCCTTTCGAATAAGAGGTTGCATTATGTGGCCTTAGTGTTGGCTTCAATAGACCCTTCTTCAATTCCTTTAGGGTTCCAGCGTCCTTAGTATGATAGGGAGACATTGAAGTTGGCCGATCTTTTTTCCTTCTTCGAGACCAGCATGTCATTCCAAGGAGAAGGAATGTTAGTATTTGGCCCTCCGATCCTCATAGGGGTTTCTTTTGCCATTTTTTTTCCTCATATTTTGTCCTCCCCTTCTCCACCTCTTGTTGCCTCTTTTTTTTTTTTTTTCCCTCTCTCTTCCTATGTTTTGTTCCCGCAACAGTGCACTGAGATAAGAGGTATGGGGAGGACCTATTTCATTTGTTTTGGGATTGCTAGTTTACTCACCACCGTTGGAGTTTTTGGTTGAGAGTTTGGTGTTTGTTTGGTTTGGAATAGAGATGGCACCCAGGTGGAAGAGGTGCTTTCATGCACTTCATTCAAGGAGCAGGGCAAAGTTCTGTGGCATGTTAGCTTTTTTGTAGTTTTGTGGGGCATTTGGATTGACATGAACAATAGAATTTTTACAGAGGTGGAGAGATAGGTGAGGAAGTTAGGGAGGTGGCTAAGTTCAATGTTGTGGGCGTCAGTCACTAGGCTTTTTTGTAATTATGAGCCTAGTCTTGTTTTTTTGGATTGGAGTCCTTTTTTGATGTTGAGGTCAATCTCCCATTTGTTGGGGCTTGTCTGATTTGTGTGTCCTTTGTATATTCTTTCATTTCTTACCAAAAAAGAAAAAAAAATGGGGTTGGAAATTTTAAAAAAATGAAAATTCATGGAAGTGAGACTTTTATTTATTTACTTATATATTTTTATGAAATAATTATTATTATAGCATAGAGTATTCTTTTTTAGTCTTCTAGAGCATTCCTCGTGGTTAGGGATGGTTAATAATGAATTGAATATATGTTCTTTCTGTATTTTTATGTAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCAAGGCTTTTCGAGTATTCAGGTATTTCGGTGTATATATTTTAAAATTTAATGTTCTTATGCATGCTGATGCTGAAAACTTCTAAATGCTTGTTGTCAAATACTTTAGATTTGACTCTTATCCTTGAACTTTTCGAGGATACTTAACTAATAATTTCGGTTTAAAATTAGATAGGGACACACCAAATGAGAAGAATACAGTTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACAACGCCTTACAGGTATTTTTCTTGTTGCTTTTGGAGTTCATGCTCTATGCATAACTTTTCTTAATTATTAACTTGTTTCACAACAATTTTATTTCTCATTATTGATGATGAATGTATAATTGATGATTCAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGTAACTGAACTCTAAATTTTATTTCTTATCTGTTGAAAGATAGGGAAGAAGTGGTGTGCATGGGTAGATGAGCGAAGCTGATGAGTTATGCTCAGAATAACATGTTTTGAATATGAAATTTTTGATTTATGTGCTTGTTGTAAAATTATTACATATGAATAGGTTCTTTATTTTATTTATTTTATAAGAACAAATTTTAATGATGTATGAAATTTACAAAAGAAGGGTTTATCCTAAGCCAATGGAGTTATAAAAGATCTTTCCAATTGGTCAAAAGAGAAATGAGAGAATAAGATCTATAACAAGTAGCGCATTTACACCAAGTCGTAGCAAGGAAAATAATATGTTCAAAGAAGCTATCAAAAGTGTTTTTCCTATCTTGAAAAAGGCAGTTGGACAGCCTGAATGATTCATCCGAACTCCAAAGGCTTCTTTTTCCCTCAGTGTAAGGGTGGTCACTGAGAGAGTAGTTGAGAAGACAGTTGATGTCTCTTGAATAAATAAGGTGCCAATTTGATGCCGCAATCATTTCGTTCTACTCTTAAAGCTATTCTTCTCTCCTCTCCAATGAGAGAGGTCTTTTGTAAATTTTCGGTTTTGGGACCCTCCCTTTTGTTCATACCATCAATGAAATTGTTTCTTATCTCGAAAGAGATATCACTTTGAACGTGGTGCCTGTGCTATAAGGCTAATTGTTTCAGTTCATAATGGGATATTGTTGCTCAGTAGTTAGCAGGTGTACGTTTCTTAATTTTTGCTTCAAATATTTATAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTGAGTAATTACGTTACTGTGTTACTCAAAGATTCATTGATAGTTTGAACTAATGAAATTTGTGATATTAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTTAGTTTCCTTCTTACATTTGCTATTAATTATGTACGTACTTGGGACAATATGATGGTGATGATTCGGAGATGGGAAGGTTTGCTTGAGAATAAAGTTCTTGTCATGTATATAACTAATTTTCCTACTTTGCGAGTCTCGTTTATATCTTGGATGGAGTTATAAGCCTTGTAACCTTTTAAATATCAAAGGTGTGTTACCATGTAAAAGAAAAAGAGGGGTAACCTCTACCCCTTGCCTTTAGGCTATTCTTTGATTCTTTTGAAGAATAGATGTCTCTGTTTCTTATAAAAAATGCACTTCTGATGAATGAATGAAGAATTATTTGTTGTTTCTGATACTCAAAAGATGGATTCCAAGTTGTTGCATGCCGTTGGCCTCTTTTTGCTAAATTCAAATTGCATTTCTTTTTATCGACATTTTTTATTTTGTAGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTTGCATTGCGACGTGTGAAAGATCATTTCATTTGTAAGTAATGGTTGATTCTACATTTTTTAAGATGCTTTTAGTGCCTTGAACAAGTATTTTGAGTACTAGTATGTTTTTTTTTGTAATTTTTATGAGAACTCTACTAGTACTTCTTCACATAGTAGTACTTCAAGTGCCTTTTAAATTACTATAAAAATACACTTACAAATTACTTTCAAACACAATAAGTCAAACATGCTCCCAAATAAACATAAACTTAGTATCTTTTTTATTTTTCACTTATTATCACCTTTTTTTAGTTCAACTACAAGGAGAGATTTGAATCTCTAACCTTCAGGTTGAAGATATAATGCCTTAATCAATTGAGCTAACTTTAGAGTGACTCTTAGCTATACTCAAGTTGGCCCTTATCTTTGTTAGAAGAACACATTAACATTGTTTCAAAAAACTCATTTTTTTCATTGAGATTCGGTTTATATTTTCATTCATTTTCTCTGTGCAGTTAAGATTGAATCAACAGGAGCTTTACCTCCTCAGGTGCTATTCACTGAAGCTGTAAAAATTTTGGAAGATAAGTGTGAACGTTTAATTGCCGAGTTGTCTTGA

mRNA sequence

ATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGAAGGTGTTGGCAAAGAAGGCATTGAATGGATTATGAACCTTTCAGACGTACCCATGAAGCTCCCACCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGCGTTGATAACAGTTTACGTCTGGATTATTTTCGCAACAACTTTAAAGTTGAAGTTATTGATCTCAGAGAGGATGACATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATACTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCAAGGCTTTTCGAGTATTCAGATAGGGACACACCAAATGAGAAGAATACAGTTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACAACGCCTTACAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTTGCATTGCGACGTGTGAAAGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCTCAGGTGCTATTCACTGAAGCTGTAAAAATTTTGGAAGATAAGTGTGAACGTTTAATTGCCGAGTTGTCTTGA

Coding sequence (CDS)

ATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGAAGGTGTTGGCAAAGAAGGCATTGAATGGATTATGAACCTTTCAGACGTACCCATGAAGCTCCCACCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGCGTTGATAACAGTTTACGTCTGGATTATTTTCGCAACAACTTTAAAGTTGAAGTTATTGATCTCAGAGAGGATGACATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATACTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCAAGGCTTTTCGAGTATTCAGATAGGGACACACCAAATGAGAAGAATACAGTTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACAACGCCTTACAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTTGCATTGCGACGTGTGAAAGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCTCAGGTGCTATTCACTGAAGCTGTAAAAATTTTGGAAGATAAGTGTGAACGTTTAATTGCCGAGTTGTCTTGA

Protein sequence

MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLIAELS

Homology

[Close]

BLAST of HG10011431 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 674.9 bits (1740), Expect = 3.9e-190
Identity = 345/391 (88.24%), Postives = 354/391 (90.54%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDKSLHNMS+SESEQEGV KEGIEWIMNL DVPMKLPPHLELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGAFASMGVDNSLRLDYFRNNFK+EVIDL+EDDIEFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNT+VFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
            CERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKDSDIILARLGPGQ                                VVLLEEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELKKKCPVNVFDIEDIA GKKRATVARPRACTLCRECIRGD WEKRVALRRVKDHFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

[Close]

BLAST of HG10011431 vs. NCBI nr
Match: KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 651.7 bits (1680), Expect = 3.6e-183
Identity = 329/391 (84.14%), Postives = 347/391 (88.75%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 282 MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 341

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 342 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 401

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 402 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 461

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 462 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 521

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKD DIILARL  GQ                                VVLLE+IEDELAE
Sbjct: 522 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 581

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 582 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 641

[Close]

BLAST of HG10011431 vs. NCBI nr
Match: XP_022936430.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936440.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936448.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata])

HSP 1 Score: 651.7 bits (1680), Expect = 3.6e-183
Identity = 329/391 (84.14%), Postives = 347/391 (88.75%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKD DIILARL  GQ                                VVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

[Close]

BLAST of HG10011431 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 651.0 bits (1678), Expect = 6.1e-183
Identity = 329/391 (84.14%), Postives = 346/391 (88.49%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SE E VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKD DIILARL  GQ                                VVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

[Close]

BLAST of HG10011431 vs. NCBI nr
Match: XP_023005438.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima])

HSP 1 Score: 649.0 bits (1673), Expect = 2.3e-182
Identity = 328/391 (83.89%), Postives = 347/391 (88.75%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSG+DK+LH+MSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TS+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKD DIILARL  GQ                                VVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

[Close]

BLAST of HG10011431 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 5.2e-60
Identity = 145/363 (39.94%), Postives = 194/363 (53.44%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           +E  RTRV        +  T  + G ++  G D++   D F  NF+V+V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDR--DTPNEKNTVVFRLHARCERGKQRL-------------TVTSKALTWLPNGSEFPL 222
            ++  +   E +T+ FRL  RC R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQ------------ 282
                                     F    I P   DI++A+L PGQ            
Sbjct: 187 --------------------------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 283 --------------------VVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVAR 342
                               + LLE +E E AEEL +     V ++++I  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVAN 306

Query: 343 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLI 359
           PR  T  RE  R +  +K V L RV+DHFIF +ESTG LPP VL +EA+K+L  KC+R +
Sbjct: 307 PRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFL 340

[Close]

BLAST of HG10011431 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.4e-59
Identity = 142/363 (39.12%), Postives = 193/363 (53.17%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           +E  R+RV        +  T  + G ++  G D++   D F  NF+V+V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDR--DTPNEKNTVVFRLHARCERGKQRL-------------TVTSKALTWLPNGSEFPL 222
            ++  +   E +T+ FRL  RC R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQ------------ 282
                                     F    I P   DI++A+L PGQ            
Sbjct: 187 --------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 283 --------------------VVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVAR 342
                               + LLE +E E AEEL +     V +++++  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVAN 306

Query: 343 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLI 359
           PR  T  RE  R +  +K V L RV+DH+IF +ESTG LPP VL +EA+K+L  KC R +
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFL 340

[Close]

BLAST of HG10011431 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.3e-58
Identity = 136/352 (38.64%), Postives = 192/352 (54.55%), Query Frame = 0


Query: 41  PHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIE 100
           P+LE +RT+V        +     YSGA+ S+G DNS  L+ F+ NFK+ ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 101 FDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLF 160
           F+MIGID  +ANA RRI+I+E+PTMAIEKV + NNTSI+QDEVLAHRLG+IPI VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 161 EYSDRDTPNE----KNTVVFRLHARCER----GK-QRLTVTSKALTWLPNGSEFPLVSDK 220
            +     PN+    ++T++F+L  +CE+    GK    T  SK L W+P   +       
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ------- 192

Query: 221 SVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQVVLLE----------- 280
                           ++  P   + P  P + DI + +L PGQV+ ++           
Sbjct: 193 ----------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 281 ---------------------EIEDELAEELKKKCPVNVFDIEDIADGKKRATVARPRAC 340
                                 I+ + A +L +KCP  VFDIED      +   ARP  C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312

Query: 341 TLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKC 352
           T+CRECIR   +E+ V + RV+DHFIF IESTGAL  + +F EA+KI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of HG10011431 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 8.3e-58
Identity = 143/350 (40.86%), Postives = 189/350 (54.00%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           +E  RTRV        +  T  + G +A  G D++   + F  NF+V+V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 163 SDR--DTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKT 222
            ++  +   E +T+ FRL  RC R       +S       N   +          ++  T
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVY----------TRHMT 186

Query: 223 YTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQ------------------------- 282
           +       D  PE     I P   DI++A+L PGQ                         
Sbjct: 187 WVPLGNQADVFPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 246

Query: 283 -------VVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRG 342
                  + LLE +E E AEEL +     V ++E++  GKK A VA  R  T  RE  R 
Sbjct: 247 SYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRH 306

Query: 343 DAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLIAEL 359
           +  +K V L RV+DH+IF +ESTG LPP VL +EA+KIL  KC R + EL
Sbjct: 307 EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of HG10011431 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.5e-48
Identity = 121/360 (33.61%), Postives = 183/360 (50.83%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           ++  RT +   +D      ++ + G +     DN   LD F+ N KV +  L ++ + F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           + GID S+ANAFRRILIAE+PT+A E V + NNTSI+QDEVL+HR+GL+PI  DP +F++
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 163 SDRDTPNEK------NTVVFRLHARCERGK---------QRLTVTSKA----LTWLPNGS 222
                P ++      +TVVF L+ +CE  K         +RL V S+     L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 223 EFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQVV------ 282
           +                             F++NPI   + DI++A+L PGQ +      
Sbjct: 184 Q--------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 243

Query: 283 --------------------------LLEEIEDELAEELKKKCPVNVFDIEDIADGKKRA 342
                                     +L  IE E A + +K  P  V ++E+  DGKK+A
Sbjct: 244 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 303

Query: 343 TVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKC 352
            VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P VLF +++ +L+ KC
Sbjct: 304 RVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335

[Close]

BLAST of HG10011431 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 1.7e-183
Identity = 329/391 (84.14%), Postives = 347/391 (88.75%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKD DIILARL  GQ                                VVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

[Close]

BLAST of HG10011431 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 1.1e-182
Identity = 328/391 (83.89%), Postives = 347/391 (88.75%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSG+DK+LH+MSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TS+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQ--------------------------------VVLLEEIEDELAE 300
           PKD DIILARL  GQ                                VVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

[Close]

BLAST of HG10011431 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 8.0e-181
Identity = 332/392 (84.69%), Postives = 346/392 (88.27%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSESESEQEGV KEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGAFASMG DNSLRLD FRNNFK+EVIDL+EDDIEFDMIGIDP+LANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PI VDPRLF+YSD+D PNE NT+VFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTL-PEFSNNPI 240
            CERGK RLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ+TL  EFSNNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 241 GPKDSDIILARLGPGQ--------------------------------VVLLEEIEDELA 300
           GPKDSDIILARLGPGQ                                VVL+EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 301 EELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EEL+KKCPVNVFDIEDIA GKKRATVARPR CTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360

[Close]

BLAST of HG10011431 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 1.4e-177
Identity = 321/381 (84.25%), Postives = 338/381 (88.71%), Query Frame = 0


Query: 11  MSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFA 70
           MS+SESEQ   GKEGIEWIMNL DVPMKLPPHLE+QRTRVECKADAPIHTDTIQYSGA+A
Sbjct: 1   MSDSESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYA 60

Query: 71  SMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKV 130
           SMGVDNSLRLDYFRNNFK+EVIDL EDDIEFDMIGIDP+LANAFRRILIAEVPTMAIEKV
Sbjct: 61  SMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 120

Query: 131 LVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHARCERGKQRLT 190
           LVANNTS++QDEVLAHRLGLIPIHVDPRLFEYSD+DTPNEKNT+VFRLHARCERGK RLT
Sbjct: 121 LVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLT 180

Query: 191 VTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILAR 250
           VTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQDTLPEFSNN IGPKD+DII+AR
Sbjct: 181 VTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIAR 240

Query: 251 LGPGQ--------------------------------VVLLEEIEDELAEELKKKCPVNV 310
           LGPGQ                                VVL EEIEDELAEELKKKCPV+V
Sbjct: 241 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDV 300

Query: 311 FDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQV 360
           FDIEDIA+GKKRA VARPR+CTLCRECIRG+AWEKRV+LRRVKDHFIFKIESTGALPP+V
Sbjct: 301 FDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV 360

[Close]

BLAST of HG10011431 vs. ExPASy TrEMBL
Match: A0A1S4DX61 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=LOC103491032 PE=3 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 2.0e-176
Identity = 325/392 (82.91%), Postives = 340/392 (86.73%), Query Frame = 0


Query: 1   MSGKDKSLH-NMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIH 60
           MSGKDK+LH  M+ESESEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 61  TDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILI 120
           TDTIQYSGAFASMG DNSLRLD FRNNFK+EVI+L+ DDIEFDMIGIDP+LANAFRRILI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 121 AEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLH 180
           AEVPTMAIEKVL ANNTSIVQDEVLAHRLGLIPI VDPRLF+YSD+D PNE NT+VFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 181 ARCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPI 240
           ARCERGK RLTV S+ALTWLPNGSEFPLVSDKS+ NSKP+TYTSFSCSQD LPEFS N I
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKLPEFSKNSI 240

Query: 241 GPKDSDIILARLGPGQ--------------------------------VVLLEEIEDELA 300
           GPKDSDIILARLGPGQ                                V+LLEEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDELA 300

Query: 301 EELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EELK+KCPVNVFDIEDIA GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 EELKRKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

[Close]

BLAST of HG10011431 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 418.3 bits (1074), Expect = 6.2e-117
Identity = 220/365 (60.27%), Postives = 263/365 (72.05%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFK 88
           I +L DVP  LPPHLELQRTRV CK D+ IH   I +SGA++SMGVDNS+RL+ F  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 89  VEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRL 148
           V+VI L E D+ FDMIG+   +ANAFRRIL+AE+P+MAIEKV VANNTS++QDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 149 GLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFPL 208
           GLIPI  DPRLFEY S+ D PNEKNT+VF+LH +C +G  R  V +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 209 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQ------------ 268
           + +   S + PKTYTSF+ SQD+ PEF+ NPI P   DI++A+LGPGQ            
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 269 --------------------VVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVAR 328
                               VVLL+E E + AEEL K CP  VFDIED+  G+KRATVAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 329 PRACTLCRECIR-GDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERL 360
           PR C+LCRECIR G  WE +V LRRVK+HFIF IESTG+ PP+VLF EAVKILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382

[Close]

BLAST of HG10011431 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 389.0 bits (998), Expect = 4.0e-108
Identity = 207/360 (57.50%), Postives = 252/360 (70.00%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 88
           I +L DVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 148
           KV+V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNT+VF+LH +C + + RL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQ----------- 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI++A+L PGQ           
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 ---------------------VVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVA 328
                                VVL  E+EDELAE L   CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 329 RPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERL 355
           +PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPP+VLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of HG10011431 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 389.0 bits (998), Expect = 4.0e-108
Identity = 207/360 (57.50%), Postives = 252/360 (70.00%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 88
           I +L DVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 148
           KV+V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNT+VF+LH +C + + RL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQ----------- 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI++A+L PGQ           
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 ---------------------VVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVA 328
                                VVL  E+EDELAE L   CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 329 RPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERL 355
           +PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPP+VLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of HG10011431 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 275.0 bits (702), Expect = 8.5e-74
Identity = 141/234 (60.26%), Postives = 178/234 (76.07%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 88
           I +L DVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 148
           KV+V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNT+VF+LH +C + + RL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQVVLLE 261
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI++A+L PGQ + LE
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELE 246

[Close]

BLAST of HG10011431 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-20
Identity = 86/288 (29.86%), Postives = 144/288 (50.00%), Query Frame = 0


Query: 88  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 147
           K+++ +L++D  +F++   D S+ANA RR++I+EVPT+AI+ V +  N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 148 LGLIPIHVD-------PRLFEYSDRDTPNEKNTVVFRLHARCERGKQRLTVTSKAL-TWL 207
           LGLIP+  +        R  +  D D   E  +V FRL ++C    Q L VTS+ L +  
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLYSAD 130

Query: 208 PNGSEFPLVSDKSVSNS---KPKTYTSFSCSQD-TLPEFSNNPIGPKDSD----IILARL 267
           P  +      D SVS+S   K          Q+  L   +   IG   +       +  +
Sbjct: 131 PTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFM 190

Query: 268 GPGQVVLLEEIEDELAEELK----KKCPVNVFDIEDIADGKKRATVARPRACTLCRECI- 327
               +++ E++ D L++E K    +  P  VF ++ +    ++  V  P A T   E I 
Sbjct: 191 YEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVT---RQVVVVDPEAYTYDEEVIK 250

Query: 328 RGDAWEK--RVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCE 353
           + +A  K   + +    D FIF +ESTGA+    L   A+ +L+ K +
Sbjct: 251 KAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLD 294

The following BLAST results are available for this feature:

BLAST of HG10011431 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903474.1	3.9e-190	88.24	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]
KAG6596753.1	3.6e-183	84.14	DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros...	[more]
XP_022936430.1	3.6e-183	84.14	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_02...	[more]
XP_023540473.1	6.1e-183	84.14	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]
XP_023005438.1	2.3e-182	83.89	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima]	[more]

BLAST of HG10011431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	5.2e-60	39.94	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	4.4e-59	39.12	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
Q54SN4	6.3e-58	38.64	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
P52432	8.3e-58	40.86	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
O94616	3.5e-48	33.61	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of HG10011431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDA3	1.7e-183	84.14	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	1.1e-182	83.89	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0L637	8.0e-181	84.69	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]
A0A6J1DXI7	1.4e-177	84.25	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A1S4DX61	2.0e-176	82.91	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of HG10011431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	6.2e-117	60.27	RNA polymerase I subunit 43	[more]
AT1G60850.2	4.0e-108	57.50	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	4.0e-108	57.50	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	8.5e-74	60.26	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	3.2e-20	29.86	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 98..357 e-value: 8.2E-72 score: 254.6
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 100..351 e-value: 3.7E-26 score: 91.6
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 131..257 e-value: 3.9E-12 score: 46.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 249..357 e-value: 8.8E-34 score: 118.2
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 87..148 e-value: 6.4E-17 score: 63.1
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 85..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 25..260
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 256..359
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 256..359
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 25..260
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 112..152
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 87..357 e-value: 1.81962E-109 score: 319.925
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 123..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011431.1	HG10011431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity