HG10011317 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011317
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ROTUNDIFOLIA like 21
Location	Chr01: 4755237 .. 4755413 (-)
RNA-Seq Expression	HG10011317
Synteny	HG10011317

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGAAACACTAAAGTTTTTGCAAAGACCACCATGGGAGAAGGCAAGAAGAAGAAGGAGAAGAAGGTTTCATGGAGATCAAGATCATCTCTTGGAGATTATATTAAAGAGCAAAAAGGAAGACTTTACATTATTCGAAGTTGCATCGTAATGCTGCTTTGTTGGCACGACTGA

mRNA sequence

ATGAGTAGAAACACTAAAGTTTTTGCAAAGACCACCATGGGAGAAGGCAAGAAGAAGAAGGAGAAGAAGGTTTCATGGAGATCAAGATCATCTCTTGGAGATTATATTAAAGAGCAAAAAGGAAGACTTTACATTATTCGAAGTTGCATCGTAATGCTGCTTTGTTGGCACGACTGA

Coding sequence (CDS)

ATGAGTAGAAACACTAAAGTTTTTGCAAAGACCACCATGGGAGAAGGCAAGAAGAAGAAGGAGAAGAAGGTTTCATGGAGATCAAGATCATCTCTTGGAGATTATATTAAAGAGCAAAAAGGAAGACTTTACATTATTCGAAGTTGCATCGTAATGCTGCTTTGTTGGCACGACTGA

Protein sequence

MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD

Homology

[Close]

BLAST of HG10011317 vs. NCBI nr
Match: XP_038906924.1 (uncharacterized protein LOC120092787 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MSR+TKV  KTTMGEG KKKEKKVSWRSRSSLG YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRSTKVVTKTTMGEG-KKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 57

[Close]

BLAST of HG10011317 vs. NCBI nr
Match: XP_008461574.1 (PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa] >TYK13498.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MSR+T    KT+MGEGK KKEKKVSWRSRSSLG YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRST----KTSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of HG10011317 vs. NCBI nr
Match: XP_011651363.1 (uncharacterized protein LOC105434872 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MSR+T    KT+MG+G+ KK+KKVSWRSRSSLG YIKEQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRST----KTSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of HG10011317 vs. NCBI nr
Match: KAE8650571.1 (hypothetical protein Csa_009769, partial [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MSR+T    KT+MG+G+ KK+KKVSWRSRSSLG YIKEQKGRLYIIRSCIVMLLCWHD
Sbjct: 5  MSRST----KTSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 58

[Close]

BLAST of HG10011317 vs. NCBI nr
Match: XP_023528694.1 (uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-12
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 13 MGEGK---KKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MG+GK   K K KKVSWRSRSS G YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MGDGKNKNKNKNKKVSWRSRSSFGSYIREQKGRLYIIRSCIVMLLCWHD 49

[Close]

BLAST of HG10011317 vs. ExPASy Swiss-Prot
Match: Q6X5U0 (Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 15 EGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          +G KKK           LG Y+KEQKGRLYIIR C+VML+CWHD
Sbjct: 2  KGTKKKTP-----CNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of HG10011317 vs. ExPASy Swiss-Prot
Match: Q6X5V0 (Small polypeptide DEVIL 1 OS=Arabidopsis thaliana OX=3702 GN=DVL1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 10 KTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          +  M   ++ KEKK S   R  LG Y+KEQKGR+YIIR C+VMLLC HD
Sbjct: 5  RVMMSSAERSKEKKRSISRR--LGKYMKEQKGRIYIIRRCMVMLLCSHD 51

[Close]

BLAST of HG10011317 vs. ExPASy Swiss-Prot
Match: Q6X5U1 (Small polypeptide DEVIL 2 OS=Arabidopsis thaliana OX=3702 GN=DVL2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 18 KKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          K+KEKK   R    LG Y+KEQKGR+YIIR C++MLLC HD
Sbjct: 8  KRKEKKSQSR---RLGKYLKEQKGRIYIIRRCVMMLLCSHD 45

[Close]

BLAST of HG10011317 vs. ExPASy Swiss-Prot
Match: Q9SAF8 (Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 28 SRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          S   LG  +KEQ+ +LYIIR C+VMLLCWHD
Sbjct: 11 SSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of HG10011317 vs. ExPASy Swiss-Prot
Match: Q6X5T8 (Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-05
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 32 LGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          +G  ++EQK +LYIIR C+VMLLCWHD
Sbjct: 20 VGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of HG10011317 vs. ExPASy TrEMBL
Match: A0A5D3CQM7 (ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00130 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MSR+T    KT+MGEGK KKEKKVSWRSRSSLG YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRST----KTSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of HG10011317 vs. ExPASy TrEMBL
Match: A0A1S3CFH9 (uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MSRNTKVFAKTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MSR+T    KT+MGEGK KKEKKVSWRSRSSLG YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRST----KTSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of HG10011317 vs. ExPASy TrEMBL
Match: A0A6J1F4S9 (uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC111442169 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 13 MGEGK-----KKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MG+GK     K K KKVSWRSRSS G YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MGDGKNKNKIKNKNKKVSWRSRSSFGSYIREQKGRLYIIRSCIVMLLCWHD 51

[Close]

BLAST of HG10011317 vs. ExPASy TrEMBL
Match: A0A6J1IZ09 (uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 13 MGEGK---KKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          MG+ K   K K KKV WRSRSS G YI+EQKGRLYIIRSCIVMLLCWHD
Sbjct: 1  MGDRKNKNKNKNKKVLWRSRSSFGSYIREQKGRLYIIRSCIVMLLCWHD 49

[Close]

BLAST of HG10011317 vs. ExPASy TrEMBL
Match: A0A6J1CQ69 (uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013296 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-11
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 14 GEGKKKKEKKVSWR-SRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          GEGKK   KKVSWR SRSSLG YI+EQKG+LYIIRSCIVMLLCWHD
Sbjct: 13 GEGKK---KKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 55

[Close]

BLAST of HG10011317 vs. TAIR 10
Match: AT1G67265.1 (ROTUNDIFOLIA like 21 )

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 15 EGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          +G KKK           LG Y+KEQKGRLYIIR C+VML+CWHD
Sbjct: 2  KGTKKKTP-----CNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of HG10011317 vs. TAIR 10
Match: AT3G02493.1 (ROTUNDIFOLIA like 19 )

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-07
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 18 KKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          K+KEKK   R    LG Y+KEQKGR+YIIR C++MLLC HD
Sbjct: 8  KRKEKKSQSR---RLGKYLKEQKGRIYIIRRCVMMLLCSHD 45

[Close]

BLAST of HG10011317 vs. TAIR 10
Match: AT5G16023.1 (ROTUNDIFOLIA like 18 )

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-07
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 10 KTTMGEGKKKKEKKVSWRSRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          +  M   ++ KEKK S   R  LG Y+KEQKGR+YIIR C+VMLLC HD
Sbjct: 5  RVMMSSAERSKEKKRSISRR--LGKYMKEQKGRIYIIRRCMVMLLCSHD 51

[Close]

BLAST of HG10011317 vs. TAIR 10
Match: AT1G13245.1 (ROTUNDIFOLIA like 17 )

HSP 1 Score: 49.7 bits (117), Expect = 9.3e-07
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 28 SRSSLGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          S   LG  +KEQ+ +LYIIR C+VMLLCWHD
Sbjct: 11 SSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of HG10011317 vs. TAIR 10
Match: AT1G68825.1 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-06
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 32 LGDYIKEQKGRLYIIRSCIVMLLCWHD 59
          +G  ++EQK +LYIIR C+VMLLCWHD
Sbjct: 20 VGGVVREQKAKLYIIRRCVVMLLCWHD 46

The following BLAST results are available for this feature:

BLAST of HG10011317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906924.1	1.3e-18	89.66	uncharacterized protein LOC120092787 [Benincasa hispida]	[more]
XP_008461574.1	1.2e-16	84.48	PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROT...	[more]
XP_011651363.1	1.0e-15	81.03	uncharacterized protein LOC105434872 [Cucumis sativus]	[more]
KAE8650571.1	1.0e-15	81.03	hypothetical protein Csa_009769, partial [Cucumis sativus]	[more]
XP_023528694.1	2.4e-12	81.63	uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10011317 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X5U0	5.3e-07	59.09	Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1	[more]
Q6X5V0	2.6e-06	57.14	Small polypeptide DEVIL 1 OS=Arabidopsis thaliana OX=3702 GN=DVL1 PE=1 SV=1	[more]
Q6X5U1	2.6e-06	63.41	Small polypeptide DEVIL 2 OS=Arabidopsis thaliana OX=3702 GN=DVL2 PE=2 SV=1	[more]
Q9SAF8	1.3e-05	64.52	Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1	[more]
Q6X5T8	2.9e-05	66.67	Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1	[more]

BLAST of HG10011317 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQM7	5.9e-17	84.48	ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G...	[more]
A0A1S3CFH9	5.9e-17	84.48	uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=...	[more]
A0A6J1F4S9	2.0e-12	78.43	uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1IZ09	4.8e-11	77.55	uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952...	[more]
A0A6J1CQ69	8.3e-11	84.78	uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of HG10011317 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67265.1	3.8e-08	59.09	ROTUNDIFOLIA like 21	[more]
AT3G02493.1	1.9e-07	63.41	ROTUNDIFOLIA like 19	[more]
AT5G16023.1	1.9e-07	57.14	ROTUNDIFOLIA like 18	[more]
AT1G13245.1	9.3e-07	64.52	ROTUNDIFOLIA like 17	[more]
AT1G68825.1	2.1e-06	66.67	ROTUNDIFOLIA like 15	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 37..55 e-value: 1.0E-10 score: 41.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR47855	OS01G0525701 PROTEIN	coord: 16..58
None	No IPR available	PANTHER	PTHR47855:SF3	DVL1-RELATED	coord: 16..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011317.1	HG10011317.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane