HG10011303 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011303
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	Chr01: 4611668 .. 4613951 (-)
RNA-Seq Expression	HG10011303
Synteny	HG10011303

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCACTACTTCAAAACCATTCCAAGTTCCTTTTGCCGTGAAGCAAAGAACTATGGCTTCTTCCTGCATTGCCAACTTGCATTCTGTTTCTGGGTTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTTCTGCTACGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCCGAGTCCTCTCCTGTTAAGGAGGTCTCTCTCTCCCTCCCTCCCTCCCTTTCCATCTCATGTGATTGCTCCGTTTAATTTAGTTGGTTTTTAGCAAGTTTTAAACGTATGTTTGTTTTTTCTGCTGGATGGATGGTGATCGTCTGAAATTTAGGGGTGAGCAATGGAAAGGTTGGTAAAGAAACAGTATGGTCGTTGCTTAGTTAATTGAGAGGGGCGGATTAATTGGTGAATTTGGTTACTTGAAAGCTCGTTGTATTTGTAGAAACTGTTAAAAAAAATTCTTGATTTTTTTTTTCTGGTTCTTTATAAAGTAAGTACTTGAATTCTTTGAGATCCAATTGCTTACTGTGGCTATGTATAGTTCTTTATTTGTTTGATCGAGTAGTGTTATTTTCTCTATGAACAATGATAGAAATTCTGGTATAAACGAATTACTAATAGTTTGTGAGTAACTTGGCAGATATGTTCTAATGAGAATGTTGATGTTGATTTTCATGAATCCCTTATTATGAAATTTGAAACGAACGTATGGAAGAAAATCAATTCTCACCCAGTAGTTAGATGATTAAGGCAACTTTAAGCGTAAAATGTTAATTTCATTAAATTCAATTTGAAATTTGAATAAATAGTGAATTAATACCCCTTGTTGGCTGAGTTGCTATTTCCTCTAGGTTTCTGGTTATATCTGTGTTCTTGTGATGCGAATTGGGATGTGGTTAGTTTTTTGAATGCTCATTTTATTGTTGGATTTGTGTATTGCTTTGGTTGTTCAACTTTGTGGCTGGATTTGGATGTCTCTTCACCTAGTTTTGAATATAGTAGTTGGAATTTGATTTTGTTTTCTGAATTTTAAGTGATATTTTGCTGCTTTTTGAGCGATTTTCTAGTTTTATTTTATGAGATTTTAGTTTCATCAATTATTTAAGTTTAGAATTCAATTCGATAAAATTATAACTTTTAAGGCTAATGTATATGTGGAGTTTTCTTTTTTTTTTTTCTTTTCCCCTCCCTTTATCCATCTCTTAAGGGGGTGCCTTTTGCTTGCTATTTTGATAAACCTAGGTTTAGTTTGGATTTGTTTAATCTACGTTAGGATTTGTAAGAGAATGAGTTGTAGAAATCTTGTATGTGTAAAATGTGTTTTGTTCAAGTTCAACTATAAAAGGTGGTTTCATTTGTTTATATTTATGTAACCTGAGTTGTTGTAGCTTGTAGGATTAGCTAACTCTTAACCCGTGGGATAAGAATTTTAACTTGGATAAATAAGCTCACGTCCTAAAGTTTAGGAATACCTCTTTACTATCTTAACATTGAGCTACACAAATCTAACTCGTGTATTGAACATGTCCTAAAGATATCGTTTATGCTATACTATACAATATCTAGAACAACTTAAAGAATGTGTATTTTTTGAAAAAATATTTATTATGAACAAACTTATCTGGTAACCATATTTCCCCTACTTAGCTTTACTTTACTGATAGAGTCTTAGAGATAATCTCCCTCTCTTTGATATCAATATCAAGTACTGAAACTGACAGTACACAACAGTGAAAATCTCTTTGTTCTCATTATTTTTACGAAACACAATAGAACCAGTACTTGTATTTTGATTTTACAGTTTCCTTTTGCTTTTACAAATGAAATATTGAGCAAAATAGATTTATCAGGAAGGCTTCCTCTGACAAATTAAACACTCACGGTCTTTATTTTGGTGTTATAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCCACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCATAA

mRNA sequence

ATGATGATATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCACTACTTCAAAACCATTCCAAGTTCCTTTTGCCGTGAAGCAAAGAACTATGGCTTCTTCCTGCATTGCCAACTTGCATTCTGTTTCTGGGTTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTTCTGCTACGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCCGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCCACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCATAA

Coding sequence (CDS)

ATGATGATATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCACTACTTCAAAACCATTCCAAGTTCCTTTTGCCGTGAAGCAAAGAACTATGGCTTCTTCCTGCATTGCCAACTTGCATTCTGTTTCTGGGTTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTTCTGCTACGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCCGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCCACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCATAA

Protein sequence

MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLRRQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA

Homology

[Close]

BLAST of HG10011303 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 9.8e-95
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNVNFCFNTSNFTAQT TSKPFQVPFAVKQR+ +SSCI NLHSVS  KLR
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QNFRTL+ISASATAAEA EAA ESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 193

[Close]

BLAST of HG10011303 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 4.2e-90
Identity = 176/193 (91.19%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNV+FCFNTSNFTAQ   SKPFQ+PFAVKQRT ASSCI N HSV GLKLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQ-PASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISASA + EAVEAASESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of HG10011303 vs. NCBI nr
Match: XP_004145640.2 (30S ribosomal protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 7.2e-90
Identity = 175/193 (90.67%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNVNFCFNTSNFTAQ T SKPF++PFAV+QRT ASSCI N H+V GL+LR
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQ-TASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 81

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQNFRT EISASA   EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 202 IINLWQQGGGNLA 213

[Close]

BLAST of HG10011303 vs. NCBI nr
Match: KGN57759.2 (hypothetical protein Csa_011376 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 4.0e-88
Identity = 172/189 (91.01%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLRRQNF 64
           MAVQLQPNVNFCFNTSNFTAQ T SKPF++PFAV+QRT ASSCI N H+V GL+LRRQNF
Sbjct: 1   MAVQLQPNVNFCFNTSNFTAQ-TASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNF 60

Query: 65  RTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 124
           RT EISASA   EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIWMEKN
Sbjct: 61  RTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 120

Query: 125 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 184
           IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL
Sbjct: 121 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 180

Query: 185 WQQGGGNLA 194
           WQQGGGNLA
Sbjct: 181 WQQGGGNLA 188

[Close]

BLAST of HG10011303 vs. NCBI nr
Match: KAA0063423.1 (30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 5.7e-87
Identity = 173/193 (89.64%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNV+FCFNTSNFTAQ   SKPFQ+PFAVKQRT ASSCI N HSV GLKLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQ-PASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISASA + EAVEAASESLV DDSDS SSP   KLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 189

[Close]

BLAST of HG10011303 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.8e-49
Identity = 112/192 (58.33%), Postives = 134/192 (69.79%), Query Frame = 0


Query: 2   MISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLRR 61
           M+SMAV  QPN+N     S + +   + KPF+ P     +   S       S S  +L++
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFKTPAFANPKPFFS-------SPSFSQLKK 60

Query: 62  QNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWM 121
           +N  +L + A  T ++     +E     D D +    KEKL V+VKPM+KPRLVLKFIWM
Sbjct: 61  KNNWSLFV-APETISDVAIMGNEV----DIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWM 120

Query: 122 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 181
           EKNIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDI 178

Query: 182 INLWQQGGGNLA 194
           INLWQQ GGNLA
Sbjct: 181 INLWQQSGGNLA 178

[Close]

BLAST of HG10011303 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-40
Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 53  SVSGLKLRRQNFRTLEISASATAAEAVEA-------ASESLVADDSDSESSPVKEKLGVV 112
           S+  LK RR   R+L    +A AA AVEA         +  +  + D+E+    E+  V 
Sbjct: 33  SLVHLKSRRPPLRSLRSLTAAAAAAAVEAGEPYFGLGDDEPLGGEGDAEAVVESEEYKVE 92

Query: 113 VKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPW 172
           V   + P LVLKFIWMEKNIGIALDQM+PG G+IPLSPYYFWPRKDAWEEL+  LE K W
Sbjct: 93  VPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEW 152

Query: 173 ISQKQMIILLNQATDIINLWQQGGGNLA 194
           ISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 153 ISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of HG10011303 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.2e-40
Identity = 75/103 (72.82%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 92  DSESSPV-KEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRK 151
           +SES P+ K+K+ V+VKP+EKP++VLKF+WM+K+IG+ALD MIPG GTIPLSPYYFWPRK
Sbjct: 81  ESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRK 140

Query: 152 DAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 194
           DAWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG+L+
Sbjct: 141 DAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of HG10011303 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.9e-39
Identity = 80/131 (61.07%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 62  QNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWM 121
           Q  + + +        A E  +   V     S+++P  ++   VVKP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWM 94

Query: 122 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 181
           EKNIG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 182 INLWQQGGGNL 193
           INLWQQ GGNL
Sbjct: 155 INLWQQSGGNL 163

[Close]

BLAST of HG10011303 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 113 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 172
           +  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 173 ILLNQATDIINLWQQGG 190
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of HG10011303 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.1e-90
Identity = 176/193 (91.19%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNV+FCFNTSNFTAQ   SKPFQ+PFAVKQRT ASSCI N HSV GLKLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQ-PASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISASA + EAVEAASESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of HG10011303 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 175/193 (90.67%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNVNFCFNTSNFTAQ T SKPF++PFAV+QRT ASSCI N H+V GL+LR
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQ-TASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 81

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQNFRT EISASA   EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 202 IINLWQQGGGNLA 213

[Close]

BLAST of HG10011303 vs. ExPASy TrEMBL
Match: A0A5D3CJH0 (30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00620 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.8e-87
Identity = 173/193 (89.64%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMASSCIANLHSVSGLKLR 60
           MM+SMAVQLQPNV+FCFNTSNFTAQ   SKPFQ+PFAVKQRT ASSCI N HSV GLKLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQ-PASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISASA + EAVEAASESLV DDSDS SSP   KLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 189

[Close]

BLAST of HG10011303 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.8e-84
Identity = 168/202 (83.17%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMA----------SSCIAN 60
           MM+SMAVQLQPN+NFC NTSNF AQ  TSKPFQV F VKQRT A          SSCIA+
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  LHSVSGLKLRRQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPME 120
            H  SG K RRQNFR LE+SA A A EAVEAASES V DDSDS SSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 193
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of HG10011303 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.9e-84
Identity = 166/201 (82.59%), Postives = 180/201 (89.55%), Query Frame = 0


Query: 1   MMISMAVQLQPNVNFCFNTSNFTAQTTTSKPFQVPFAVKQRTMA--------SSCIANLH 60
           MM+SMAVQLQPNVNFC NTS F++   TSKP QVPFA+KQRT A        SSCIA+++
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 61  SVSGLKLRRQNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKP 120
           SVSGLKLRRQ+F+TL++SASA AA+AV+A SES VADDS SESSP KEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGNLA 194
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of HG10011303 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-41
Identity = 75/103 (72.82%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 92  DSESSPV-KEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRK 151
           +SES P+ K+K+ V+VKP+EKP++VLKF+WM+K+IG+ALD MIPG GTIPLSPYYFWPRK
Sbjct: 81  ESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRK 140

Query: 152 DAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 194
           DAWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG+L+
Sbjct: 141 DAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of HG10011303 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 161.8 bits (408), Expect = 5.6e-40
Identity = 80/131 (61.07%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 62  QNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWM 121
           Q  + + +        A E  +   V     S+++P  ++   VVKP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWM 94

Query: 122 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 181
           EKNIG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 182 INLWQQGGGNL 193
           INLWQQ GGNL
Sbjct: 155 INLWQQSGGNL 163

[Close]

BLAST of HG10011303 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-39
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 62  QNFRTLEISASATAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWM 121
           Q  + + +        A E  +   V     S+++P +      +KP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTPQQ-----TIKPDEKSRVVLKFVWM 94

Query: 122 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 181
           EKNIG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 182 INLWQQGGGNL 193
           INLWQQ GGNL
Sbjct: 155 INLWQQSGGNL 160

The following BLAST results are available for this feature:

BLAST of HG10011303 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875586.1	9.8e-95	93.78	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]
XP_008461583.1	4.2e-90	91.19	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
XP_004145640.2	7.2e-90	90.67	30S ribosomal protein 3, chloroplastic [Cucumis sativus]	[more]
KGN57759.2	4.0e-88	91.01	hypothetical protein Csa_011376 [Cucumis sativus]	[more]
KAA0063423.1	5.7e-87	89.64	30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal pro...	[more]

BLAST of HG10011303 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	3.8e-49	58.33	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
O48609	1.4e-40	60.81	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
Q9LFV0	4.2e-40	72.82	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q9SX22	7.9e-39	61.07	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P51351	8.8e-22	57.14	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of HG10011303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CF24	2.1e-90	91.19	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A0A0L9T8	3.5e-90	90.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]
A0A5D3CJH0	2.8e-87	89.64	30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D356	3.8e-84	83.17	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K853	4.9e-84	82.59	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of HG10011303 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15760.1	3.0e-41	72.82	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.1	5.6e-40	61.07	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	2.8e-39	59.54	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 141..187 e-value: 1.0E-26 score: 92.8
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..193
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 113..191 e-value: 2.8E-33 score: 115.8
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011303.1	HG10011303.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome