HG10011271 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTTGGCATAAATGCGCGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGAGAACCTGATATTCCTTGAAAATACATGCTCACGGGGATTTCAAATAACACTATAGTAACTCTTAACAGAAGTGGATGAGTAAAATTGTTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCTGAATCGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATACGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCGTCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCGCGCAGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCACTTTTTTTTTCGATTAATATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGTAAGTTCCTCCCTGTATTTGTAAATTTATGCAGTAATGTGTTGCTATTTGGCTTTCTCTGGAATCAAGGATTAATATTGTTTTGGTAGCCACAACTGTGTGACCATTGAATCAACATTTGCTTTTGGTGGATTCAACTTTATCTGTATGCAGTACTGAAATCTCAATCTTTACTTTAGAAGTTGGATAGTGCTGGAAAAAACTATTATGAGGAACTTTTGACTAGAGTACATAACAACTTCAAGTTAATGAATAAATTATATATATTGCACATTTTTATATAATTTCTCCTTAATGGTTTAATATTTTATTTCATGAAGAAAACTACACTCCAAAGTAATAAATTGATTATTAGTTATTTGTGGTTCAAAAGTTTCCGTTTATGAATTAAAGTATGGATGGGATAAAAGTGATCTTATTTCGAGTAAAAAAATATGTTGTATTTTTAATTAACCAACTTGTGTTGGCTAGGCTTAACACGCTTCATTTTTAAGAAGTTTGAACGTAGCTAATTTAATATATTCAGTTCATTTCAATCTAGATATCCCAAAAACTTGTTACTCCAACCCAACCCATTAAGCTTTTCAGGGCTGATTTTCTTTTCCGCTTCTTTAAGGACTAAACCTATCTGCAAAGCAGTACAATATATGAGATTGTGGTTTCATATGTGGTGGCATAGTCTCATTCTTTAGTGTGTATTGATCCTTGACCATGTATTCTCTATTTCTTGCTCCTCTACATTGTCTTTGCTTATCAATTATCGTTGTTATTCATTTTTACTTTCTCTTAAGTTAGCATGAGATTTAGTAGAAAATATGATAATTATCGTATTTATGTTTTAGAAGCGTATATAAAAGTTAGCTCCCTAATCAAGCTTTAGCTGGCTGATAAACTTTCCATTGTCTATTGAAGGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAG ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAG ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAG MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTYVVF Homology
BLAST of HG10011271 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida]) HSP 1 Score: 328.6 bits (841), Expect = 3.5e-86 Identity = 171/200 (85.50%), Postives = 176/200 (88.00%), Query Frame = 0
BLAST of HG10011271 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo]) HSP 1 Score: 328.2 bits (840), Expect = 4.5e-86 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata]) HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo]) HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima]) HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50 Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.3e-48 Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.3e-35 Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 6.5e-35 Identity = 88/191 (46.07%), Postives = 114/191 (59.69%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28 Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86 Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A0A0L717 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85 Identity = 169/200 (84.50%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 7.1e-85 Identity = 171/200 (85.50%), Postives = 175/200 (87.50%), Query Frame = 0
BLAST of HG10011271 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 ) HSP 1 Score: 200.7 bits (509), Expect = 1.0e-51 Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 0
BLAST of HG10011271 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 ) HSP 1 Score: 200.7 bits (509), Expect = 1.0e-51 Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 0
BLAST of HG10011271 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49 Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 0
BLAST of HG10011271 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49 Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 0
BLAST of HG10011271 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 151.8 bits (382), Expect = 5.4e-37 Identity = 82/168 (48.81%), Postives = 108/168 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|