HG10011242 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011242
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Bet_v_1 domain-containing protein
Location	Chr01: 3861604 .. 3861816 (+)
RNA-Seq Expression	HG10011242
Synteny	HG10011242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAGATTTCTAAGATATCAGAACAGCTGCAGCTGAAATGTTCTGGTGAAAAGTTCTATGAGCTTTTTAAGAACAAAATGGAATGTTTTTGTCAAATGTTCCCCAAAAACATTCAAATCTATAAAGTTGTGGAGGGAAATGGTTTTGCTCATGGCAGCATTGTCGACTGTAAATATGACCTCGGTCAGATTCTAAACCCTAAACTCTAA

mRNA sequence

ATGGCTCAGATTTCTAAGATATCAGAACAGCTGCAGCTGAAATGTTCTGGTGAAAAGTTCTATGAGCTTTTTAAGAACAAAATGGAATGTTTTTGTCAAATGTTCCCCAAAAACATTCAAATCTATAAAGTTGTGGAGGGAAATGGTTTTGCTCATGGCAGCATTGTCGACTGTAAATATGACCTCGGTCAGATTCTAAACCCTAAACTCTAA

Coding sequence (CDS)

ATGGCTCAGATTTCTAAGATATCAGAACAGCTGCAGCTGAAATGTTCTGGTGAAAAGTTCTATGAGCTTTTTAAGAACAAAATGGAATGTTTTTGTCAAATGTTCCCCAAAAACATTCAAATCTATAAAGTTGTGGAGGGAAATGGTTTTGCTCATGGCAGCATTGTCGACTGTAAATATGACCTCGGTCAGATTCTAAACCCTAAACTCTAA

Protein sequence

MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKYDLGQILNPKL

Homology

[Close]

BLAST of HG10011242 vs. NCBI nr
Match: XP_022948009.1 (MLP-like protein 31 isoform X3 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-19
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGE+FYELFKNKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISKQLQLKCSGERFYELFKNKMDSITQMFPKKLLSYKIVEGNGFAHGSVVHWKY 60

Query: 61 DLGQI 66
          D G +
Sbjct: 61 DFGDL 65

[Close]

BLAST of HG10011242 vs. NCBI nr
Match: XP_022948007.1 (MLP-like protein 34 isoform X1 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGE+FYELFKNKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISKQLQLKCSGERFYELFKNKMDSITQMFPKKLLSYKIVEGNGFAHGSVVHWKY 60

Query: 61 DLGQILNPK 70
          +L   L  K
Sbjct: 61 ELRGTLEAK 69

[Close]

BLAST of HG10011242 vs. NCBI nr
Match: KAG6605298.1 (hypothetical protein SDJN03_02615, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGEKFYE F+NKM+   QMFPK +  YK+VEGNGFAHG++V  KY
Sbjct: 1  MAQISNISKQLQLKCSGEKFYEFFRNKMDSITQMFPKKLLSYKIVEGNGFAHGTVVHWKY 60

Query: 61 DLGQILNPK 70
          D G  L  K
Sbjct: 61 DFGCPLEAK 69

[Close]

BLAST of HG10011242 vs. NCBI nr
Match: KAG6581205.1 (hypothetical protein SDJN03_21207, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017944.1 hypothetical protein SDJN02_19810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-18
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS QLQLKCSGE+FYE ++NKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISHQLQLKCSGEQFYEFYRNKMDRLTQMFPKKLLGYKIVEGNGFAHGSVVHWKY 60

Query: 61 DLGQILNPK 70
          +LG IL  K
Sbjct: 61 ELGCILEAK 69

[Close]

BLAST of HG10011242 vs. NCBI nr
Match: XP_022948008.1 (MLP-like protein 34 isoform X2 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 7.8e-18
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGE+FYELFKNKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISKQLQLKCSGERFYELFKNKMDSITQMFPKKLLSYKIVEGNGFAHGSVVHWKY 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of HG10011242 vs. ExPASy TrEMBL
Match: A0A6J1G8K9 (MLP-like protein 31 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111451715 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGE+FYELFKNKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISKQLQLKCSGERFYELFKNKMDSITQMFPKKLLSYKIVEGNGFAHGSVVHWKY 60

Query: 61 DLGQI 66
          D G +
Sbjct: 61 DFGDL 65

[Close]

BLAST of HG10011242 vs. ExPASy TrEMBL
Match: A0A6J1G803 (MLP-like protein 34 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451715 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-19
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGE+FYELFKNKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISKQLQLKCSGERFYELFKNKMDSITQMFPKKLLSYKIVEGNGFAHGSVVHWKY 60

Query: 61 DLGQILNPK 70
          +L   L  K
Sbjct: 61 ELRGTLEAK 69

[Close]

BLAST of HG10011242 vs. ExPASy TrEMBL
Match: A0A6J1G869 (MLP-like protein 34 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451715 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.8e-18
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS+QLQLKCSGE+FYELFKNKM+   QMFPK +  YK+VEGNGFAHGS+V  KY
Sbjct: 1  MAQISNISKQLQLKCSGERFYELFKNKMDSITQMFPKKLLSYKIVEGNGFAHGSVVHWKY 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of HG10011242 vs. ExPASy TrEMBL
Match: A0A6J1F9L7 (kirola-like OS=Cucurbita moschata OX=3662 GN=LOC111442063 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS QLQLKC+GE+FYE ++NKM+   QMFPK +  YK+VEGNGFAHGS++  KY
Sbjct: 1  MAQISNISHQLQLKCTGEQFYEFYRNKMDRLTQMFPKKLLGYKIVEGNGFAHGSVIHWKY 60

Query: 61 DLGQILNPK 70
           LG IL  K
Sbjct: 61 KLGCILEAK 69

[Close]

BLAST of HG10011242 vs. ExPASy TrEMBL
Match: A0A6J1J068 (kirola-like OS=Cucurbita maxima OX=3661 GN=LOC111481515 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1  MAQISKISEQLQLKCSGEKFYELFKNKMECFCQMFPKNIQIYKVVEGNGFAHGSIVDCKY 60
          MAQIS IS QLQLKCSGE+FYE ++NKM+   QMFPK +  YK+VEGNG AHGS+V  KY
Sbjct: 1  MAQISNISHQLQLKCSGEQFYEFYRNKMDRLTQMFPKKLLGYKIVEGNGCAHGSVVQWKY 60

Query: 61 DLGQILNPK 70
           LG I   K
Sbjct: 61 KLGGIQEAK 69

The following BLAST results are available for this feature:

BLAST of HG10011242 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948009.1	7.1e-19	72.31	MLP-like protein 31 isoform X3 [Cucurbita moschata]	[more]
XP_022948007.1	1.6e-18	69.57	MLP-like protein 34 isoform X1 [Cucurbita moschata]	[more]
KAG6605298.1	2.7e-18	68.12	hypothetical protein SDJN03_02615, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6581205.1	4.6e-18	68.12	hypothetical protein SDJN03_21207, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948008.1	7.8e-18	75.41	MLP-like protein 34 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10011242 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8K9	3.4e-19	72.31	MLP-like protein 31 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111451715 PE=...	[more]
A0A6J1G803	7.6e-19	69.57	MLP-like protein 34 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451715 PE=...	[more]
A0A6J1G869	3.8e-18	75.41	MLP-like protein 34 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451715 PE=...	[more]
A0A6J1F9L7	1.4e-17	65.22	kirola-like OS=Cucurbita moschata OX=3662 GN=LOC111442063 PE=3 SV=1	[more]
A0A6J1J068	1.2e-16	65.22	kirola-like OS=Cucurbita maxima OX=3661 GN=LOC111481515 PE=3 SV=1	[more]

BLAST of HG10011242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023393	START-like domain superfamily	GENE3D	3.30.530.20		coord: 1..67 e-value: 5.4E-12 score: 47.8
IPR000916	Bet v I/Major latex protein	PFAM	PF00407	Bet_v_1	coord: 5..62 e-value: 2.1E-7 score: 31.0
None	No IPR available	PANTHER	PTHR31907	MLP-LIKE PROTEIN 423	coord: 1..64
None	No IPR available	PANTHER	PTHR31907:SF52	MAJOR LATEX PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011242.1	HG10011242.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response