HG10011222 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011222
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 3674750 .. 3675845 (-)
RNA-Seq ExpressionHG10011222
SyntenyHG10011222
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTATTCTCTCAAATAGGAACCGCATTAGACACCGACGGGTAAACGACGGTGGCCGGATGCGCCATGATACGGCGGCCCTTGTGGTGGCGGAAGCAGTAAACCAGAGCTCCGACCGGCCACTCCACCACTGCCGCCACAGCGAAGGCCAAGAACCCCAAGGTCGGCCCCACCACCTTGCATCTGCACGGATTGCTGTGGGTCCCACATTCGATACAGATCGGAACGCCGATTCCGACAGCCATTCGCCGGGATTTGTCACCGGAGCACGACGGAGTTTAACGAAGAAGAGGAAGGGGACAAATTCGCCGATTGTTGCGCCGAGTGCGAGGAAAGGTATTAGGTTAAAGTTGGGAATTTGGGAATTTGACGGTCTTTTGGAATTTTTTTTATAGAGGGAAGTTTTATGGGAATTTGAGATTTTGATAGGACACGTGGCGATTTTAGCAAGAGTTCGTTGGACACGTCTCGTAGAGTTGGATAGTGGTACAGGTGTCTTGGTATTACTGCTGGATGTTGAGTTTGTTTAAGAAGACAGGCCCAACCGATGTTGCTACTAATGGGCCGACAGTAGGCCCAATTCGTTTTTGCAAGTTAAACACAAGCCCATTCTGATCTTGGAAGGCTGTCATAAGAGTATCAACTAGTTTGCTGCTCTATAGAAAGAGTCCTAAATGATGTAGATCTTCACTTGTAAATTTTGGTTAATTATAGAGGAATTGTGTAGATGGTCAAAACGGAACACCTAATTGAAAAAATGGTCGTTTTTAAAATTATTTGATTTATGGCCAAAAACGTGATATGGGGTCCATCTCCCTACCTATTTTTTCAATTTTGTCCCGTCCAAATCCAATGTTTCCATCAATTATGGATTAATATATCTCCCCACATCTGATATCTCTATATGTATTAGTTTAATTTTTTTTTTAAAAAAAAAAACTTTTAATTTCTTCTTCCCCTCACATCTCTACCCACGCAAGAAGGAGAAGCCACCAATCGCCTCTAGACAATGTCCACCTTTGGACAAAGTGTGATGGAGGCTTTGTAGATGAACTCATGAGCGGGACAGAGTGTGGTGGAGGCTTGACGAGGTAA

mRNA sequence

ATGCGTATTCTCTCAAATAGGAACCGCATTAGACACCGACGGGTAAACGACGGTGGCCGGATGCGCCATGATACGGCGGCCCTTGTGGTGGCGGAAGCAGTAAACCAGAGCTCCGACCGGCCACTCCACCACTGCCGCCACAGCGAAGGCCAAGAACCCCAAGGTCGGCCCCACCACCTTGCATCTGCACGGATTGCTGTGGGTCCCACATTCGATACAGATCGGAACGCCGATTCCGACAGCCATTCGCCGGGATTTGTCACCGGAGCACGACGGAGTTTAACGAAGAAGAGGAAGGGGACAAATTCGCCGATTGTTGCGCCGAGTGCGAGGAAAGACAATGTCCACCTTTGGACAAAGTGTGATGGAGGCTTTGTAGATGAACTCATGAGCGGGACAGAGTGTGGTGGAGGCTTGACGAGGTAA

Coding sequence (CDS)

ATGCGTATTCTCTCAAATAGGAACCGCATTAGACACCGACGGGTAAACGACGGTGGCCGGATGCGCCATGATACGGCGGCCCTTGTGGTGGCGGAAGCAGTAAACCAGAGCTCCGACCGGCCACTCCACCACTGCCGCCACAGCGAAGGCCAAGAACCCCAAGGTCGGCCCCACCACCTTGCATCTGCACGGATTGCTGTGGGTCCCACATTCGATACAGATCGGAACGCCGATTCCGACAGCCATTCGCCGGGATTTGTCACCGGAGCACGACGGAGTTTAACGAAGAAGAGGAAGGGGACAAATTCGCCGATTGTTGCGCCGAGTGCGAGGAAAGACAATGTCCACCTTTGGACAAAGTGTGATGGAGGCTTTGTAGATGAACTCATGAGCGGGACAGAGTGTGGTGGAGGCTTGACGAGGTAA

Protein sequence

MRILSNRNRIRHRRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIAVGPTFDTDRNADSDSHSPGFVTGARRSLTKKRKGTNSPIVAPSARKDNVHLWTKCDGGFVDELMSGTECGGGLTR
Homology
BLAST of HG10011222 vs. NCBI nr
Match: KAG6581216.1 (hypothetical protein SDJN03_21218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0

Query: 21  MRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIAVGPTFDTDRNADSD 80
           MRHDTAALVVAEA+NQSS  PL++ RH E QEPQGRPHHLA ARIAVG TFD DRNADSD
Sbjct: 1   MRHDTAALVVAEAINQSSHWPLYNRRHRERQEPQGRPHHLAPARIAVGSTFDADRNADSD 60

Query: 81  SHSPGFVTGARRSLTKKRK 100
           SHSP  VTGARRS+TKK+K
Sbjct: 61  SHSPVLVTGARRSITKKKK 79

BLAST of HG10011222 vs. NCBI nr
Match: GFY86736.1 (hypothetical protein Acr_05g0003750 [Actinidia rufa])

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-08
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 5  SNRNRIRHRRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASAR 64
          SNRN I   R+NDG  + HD+AAL  AEAVN+   RP H     E QEP+  PHHLA AR
Sbjct: 23 SNRNGIGDGRINDGSGVAHDSAALGPAEAVNEGPHRPFHDGGDHERQEPERGPHHLAPAR 82

Query: 65 IAVGPTFDTDRN 77
          +A   T DT R+
Sbjct: 83 VAGRATLDTYRH 94

BLAST of HG10011222 vs. NCBI nr
Match: KAF1889378.1 (hypothetical protein Lal_00024703 [Lupinus albus])

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-07
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 5  SNRNRIRHRRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASAR 64
          S+RN IR  RV+  G +RHD A L +AE +++S+ RPLH  RH + QEP+  P+H A AR
Sbjct: 9  SDRNDIRDGRVDHSGGVRHDFATLHMAEGIDESTYRPLHQRRHRKRQEPKRWPNHFAPAR 68

Query: 65 IAVGPTFDTDRNADSD 81
          +A G T + + N  S+
Sbjct: 69 VAGGATLNANWNPYSN 84

BLAST of HG10011222 vs. NCBI nr
Match: KZV48922.1 (hypothetical protein F511_09710 [Dorcoceras hygrometricum])

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-06
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 13 RRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIAVGPTFD 72
          R +NDGG M H TAA  V E V++S  RPL+  R  E  E + RPHHLASA +A  PT  
Sbjct: 11 RGINDGGGMSHYTAAFGVPETVDKSPHRPLNQRRRRERHEAERRPHHLASAWVARRPTLH 70

Query: 73 TDRNADS 80
            RN +S
Sbjct: 71 AYRNPES 77

BLAST of HG10011222 vs. NCBI nr
Match: OIW02674.1 (hypothetical protein TanjilG_29450 [Lupinus angustifolius])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 7  RNRIRHRRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIA 66
          RN I   R++  G MRHD A L +AE ++ S+ RPLH  RH + Q+P+  P+H A AR+A
Sbjct: 10 RNCISDGRIDHSGGMRHDFATLHMAEGIDDSTYRPLHQRRHRKRQKPERWPNHFAPARVA 69

Query: 67 VGPTFDTDRNADSD 81
           G T + + N  S+
Sbjct: 70 GGATLNANWNPYSN 83

BLAST of HG10011222 vs. ExPASy TrEMBL
Match: A0A7J0EKJ5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_05g0003750 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 5  SNRNRIRHRRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASAR 64
          SNRN I   R+NDG  + HD+AAL  AEAVN+   RP H     E QEP+  PHHLA AR
Sbjct: 23 SNRNGIGDGRINDGSGVAHDSAALGPAEAVNEGPHRPFHDGGDHERQEPERGPHHLAPAR 82

Query: 65 IAVGPTFDTDRN 77
          +A   T DT R+
Sbjct: 83 VAGRATLDTYRH 94

BLAST of HG10011222 vs. ExPASy TrEMBL
Match: A0A6A5NUA1 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00024703 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.6e-07
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 5  SNRNRIRHRRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASAR 64
          S+RN IR  RV+  G +RHD A L +AE +++S+ RPLH  RH + QEP+  P+H A AR
Sbjct: 9  SDRNDIRDGRVDHSGGVRHDFATLHMAEGIDESTYRPLHQRRHRKRQEPKRWPNHFAPAR 68

Query: 65 IAVGPTFDTDRNADSD 81
          +A G T + + N  S+
Sbjct: 69 VAGGATLNANWNPYSN 84

BLAST of HG10011222 vs. ExPASy TrEMBL
Match: A0A0A9U3K1 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 14 RVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIAVGPTFDT 73
          RV+DGGR+RHD AAL VAE V++ ++ P     H E  EPQ RP HLA AR+A  P    
Sbjct: 15 RVDDGGRVRHDAAALAVAEQVHRRAEGPFDDPGHHERHEPQRRPDHLAPARVAPCPALHA 74

Query: 74 DRN 77
           R+
Sbjct: 75 HRH 77

BLAST of HG10011222 vs. ExPASy TrEMBL
Match: A0A0A8XTM6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 14 RVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIAVGPTFDT 73
          RV+DGGR+RHD AAL VAE V++ ++ P     H E  EPQ RP HLA AR+A  P    
Sbjct: 15 RVDDGGRVRHDAAALAVAEQVHRRAEGPFDDPGHHERHEPQRRPDHLAPARVAPCPALHA 74

Query: 74 DRN 77
           R+
Sbjct: 75 HRH 77

BLAST of HG10011222 vs. ExPASy TrEMBL
Match: A0A2Z7CPA9 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_09710 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 13 RRVNDGGRMRHDTAALVVAEAVNQSSDRPLHHCRHSEGQEPQGRPHHLASARIAVGPTFD 72
          R +NDGG M H TAA  V E V++S  RPL+  R  E  E + RPHHLASA +A  PT  
Sbjct: 11 RGINDGGGMSHYTAAFGVPETVDKSPHRPLNQRRRRERHEAERRPHHLASAWVARRPTLH 70

Query: 73 TDRNADS 80
            RN +S
Sbjct: 71 AYRNPES 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6581216.11.2e-2581.01hypothetical protein SDJN03_21218, partial [Cucurbita argyrosperma subsp. sorori... [more]
GFY86736.16.6e-0852.78hypothetical protein Acr_05g0003750 [Actinidia rufa][more]
KAF1889378.19.6e-0746.05hypothetical protein Lal_00024703 [Lupinus albus][more]
KZV48922.16.2e-0650.75hypothetical protein F511_09710 [Dorcoceras hygrometricum][more]
OIW02674.14.0e-0543.24hypothetical protein TanjilG_29450 [Lupinus angustifolius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J0EKJ53.2e-0852.78Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_05g0003750 PE=4 SV=1[more]
A0A6A5NUA14.6e-0746.05Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00024703 PE=4 SV=1[more]
A0A0A9U3K11.8e-0650.79Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A8XTM61.8e-0650.79Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A2Z7CPA93.0e-0650.75Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_09710 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011222.1HG10011222.1mRNA