HG10011213 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011213
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	HMA domain-containing protein
Location	Chr01: 3539783 .. 3540106 (-)
RNA-Seq Expression	HG10011213
Synteny	HG10011213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGCAGCAGATCCATCCTATAGCTTCCAAAATCAGTATATGTTTCCAATATTTGATAGAGAATTCAATAATCGGTTGCTATTTGAACATTACCTCGATCAAGGAAGTGGCATGTCGAGCAGTTTCCGGTATCATCCAGTCACTACAACTGCAGCACAGAAGGCAAGAGCTCACTGTGATAATGAAAAGCTAGGAAACCAGATGATATCCATGGCTCATAATGTAGGTATTCAAGGCTATCAGTTCGACGGAGTTCCAGATGATGCACATGTTCGAGACTATCGATTTGGCATCTTTCCAGATCTCCCTTATGCTTGA

mRNA sequence

ATGAAAGATGCAGCAGATCCATCCTATAGCTTCCAAAATCAGTATATGTTTCCAATATTTGATAGAGAATTCAATAATCGGTTGCTATTTGAACATTACCTCGATCAAGGAAGTGGCATGTCGAGCAGTTTCCGGTATCATCCAGTCACTACAACTGCAGCACAGAAGGCAAGAGCTCACTGTGATAATGAAAAGCTAGGAAACCAGATGATATCCATGGCTCATAATGTAGGTATTCAAGGCTATCAGTTCGACGGAGTTCCAGATGATGCACATGTTCGAGACTATCGATTTGGCATCTTTCCAGATCTCCCTTATGCTTGA

Coding sequence (CDS)

ATGAAAGATGCAGCAGATCCATCCTATAGCTTCCAAAATCAGTATATGTTTCCAATATTTGATAGAGAATTCAATAATCGGTTGCTATTTGAACATTACCTCGATCAAGGAAGTGGCATGTCGAGCAGTTTCCGGTATCATCCAGTCACTACAACTGCAGCACAGAAGGCAAGAGCTCACTGTGATAATGAAAAGCTAGGAAACCAGATGATATCCATGGCTCATAATGTAGGTATTCAAGGCTATCAGTTCGACGGAGTTCCAGATGATGCACATGTTCGAGACTATCGATTTGGCATCTTTCCAGATCTCCCTTATGCTTGA

Protein sequence

MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAHCDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA

Homology

[Close]

BLAST of HG10011213 vs. NCBI nr
Match: XP_038878146.1 (uncharacterized protein LOC120070300 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 4.8e-43
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           MKDA +P YS QNQYM PIFDR FNNR LFE YLDQ SGMSSSFRYHPVTT AAQKARA+
Sbjct: 98  MKDATEPFYSLQNQYMLPIFDRVFNNRSLFERYLDQESGMSSSFRYHPVTTAAAQKARAY 157

Query: 61  CDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA 108
            +NEKLGNQMIS+AHNVGIQG QFDGVPD A+V+DYRFGIFPD PYA
Sbjct: 158 WENEKLGNQMISVAHNVGIQGDQFDGVPDGAYVQDYRFGIFPDFPYA 204

[Close]

BLAST of HG10011213 vs. NCBI nr
Match: XP_031739218.1 (heavy metal-associated isoprenylated plant protein 28-like [Cucumis sativus] >KGN57433.1 hypothetical protein Csa_010682 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 6.3e-43
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           MKDA DP Y+FQNQ+M PI +REFNNR LFE YLDQ SGMS+SFRYHPVTTTAAQKARA 
Sbjct: 98  MKDATDPYYTFQNQHMLPILNREFNNRSLFERYLDQESGMSNSFRYHPVTTTAAQKARAV 157

Query: 61  CDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA 108
            DNEKLGNQMISMAHNVGIQ +QFDGVPD+  VRDYRFGIFPD PYA
Sbjct: 158 YDNEKLGNQMISMAHNVGIQDFQFDGVPDNTCVRDYRFGIFPDFPYA 204

[Close]

BLAST of HG10011213 vs. NCBI nr
Match: XP_008457088.1 (PREDICTED: uncharacterized protein LOC103496852 [Cucumis melo] >KAA0060736.1 HMA domain-containing protein [Cucumis melo var. makuwa] >TYK01477.1 HMA domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 2.6e-41
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           MKD  DP Y+FQNQ+M PI++REFNNR LFE YLDQ  GMS+SFRYHPVTTTAAQKARA+
Sbjct: 98  MKDTTDPYYTFQNQHMIPIYNREFNNRSLFERYLDQEGGMSNSFRYHPVTTTAAQKARAY 157

Query: 61  CDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA 108
            DNEKLGNQMISMAHNVGIQ +QFDGVPD+A VR ++FGIFPD PYA
Sbjct: 158 YDNEKLGNQMISMAHNVGIQDFQFDGVPDNACVRVHQFGIFPDFPYA 204

[Close]

BLAST of HG10011213 vs. NCBI nr
Match: XP_023525957.1 (heavy metal-associated isoprenylated plant protein 32-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-14
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           ++DA DPSY+FQN+Y  P+FD EFNN  L E YL Q +GMSS FR+ PVT  A QKA   
Sbjct: 99  LEDAIDPSYTFQNEYTLPMFDSEFNNPTLLECYLAQENGMSSGFRHGPVTIAATQKA--- 158

Query: 61  CDNEKLGNQMISMAHN-VGIQGYQF 85
                    MISMAH+ V IQGYQF
Sbjct: 159 ------SGSMISMAHDVVDIQGYQF 174

[Close]

BLAST of HG10011213 vs. NCBI nr
Match: KAG7036700.1 (Heavy metal-associated isoprenylated plant protein 32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           ++DA DPSY+FQN+YM PIFD EFNN  L E YL Q + MSS FR+ PV+  AAQKAR  
Sbjct: 94  LEDAIDPSYTFQNEYMLPIFDSEFNNPTLLECYLAQENSMSSGFRHGPVSIAAAQKAR-- 153

Query: 61  CDNEKLGNQMISMAHNVG-IQGYQF 85
                    M+SM H+V  IQ YQF
Sbjct: 154 -------GPMVSMTHDVADIQDYQF 169

[Close]

BLAST of HG10011213 vs. ExPASy TrEMBL
Match: A0A0A0L6R9 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G185130 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           MKDA DP Y+FQNQ+M PI +REFNNR LFE YLDQ SGMS+SFRYHPVTTTAAQKARA 
Sbjct: 98  MKDATDPYYTFQNQHMLPILNREFNNRSLFERYLDQESGMSNSFRYHPVTTTAAQKARAV 157

Query: 61  CDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA 108
            DNEKLGNQMISMAHNVGIQ +QFDGVPD+  VRDYRFGIFPD PYA
Sbjct: 158 YDNEKLGNQMISMAHNVGIQDFQFDGVPDNTCVRDYRFGIFPDFPYA 204

[Close]

BLAST of HG10011213 vs. ExPASy TrEMBL
Match: A0A5D3BQ38 (HMA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00240 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           MKD  DP Y+FQNQ+M PI++REFNNR LFE YLDQ  GMS+SFRYHPVTTTAAQKARA+
Sbjct: 98  MKDTTDPYYTFQNQHMIPIYNREFNNRSLFERYLDQEGGMSNSFRYHPVTTTAAQKARAY 157

Query: 61  CDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA 108
            DNEKLGNQMISMAHNVGIQ +QFDGVPD+A VR ++FGIFPD PYA
Sbjct: 158 YDNEKLGNQMISMAHNVGIQDFQFDGVPDNACVRVHQFGIFPDFPYA 204

[Close]

BLAST of HG10011213 vs. ExPASy TrEMBL
Match: A0A1S3C605 (uncharacterized protein LOC103496852 OS=Cucumis melo OX=3656 GN=LOC103496852 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           MKD  DP Y+FQNQ+M PI++REFNNR LFE YLDQ  GMS+SFRYHPVTTTAAQKARA+
Sbjct: 98  MKDTTDPYYTFQNQHMIPIYNREFNNRSLFERYLDQEGGMSNSFRYHPVTTTAAQKARAY 157

Query: 61  CDNEKLGNQMISMAHNVGIQGYQFDGVPDDAHVRDYRFGIFPDLPYA 108
            DNEKLGNQMISMAHNVGIQ +QFDGVPD+A VR ++FGIFPD PYA
Sbjct: 158 YDNEKLGNQMISMAHNVGIQDFQFDGVPDNACVRVHQFGIFPDFPYA 204

[Close]

BLAST of HG10011213 vs. ExPASy TrEMBL
Match: A0A6J1KBU2 (heavy metal-associated isoprenylated plant protein 32-like OS=Cucurbita maxima OX=3661 GN=LOC111492893 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-13
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           ++DA DPSY+FQN+Y  PI D EF+N  L E YL Q +GMSS FR+ PVT  AAQKAR  
Sbjct: 99  LEDAIDPSYTFQNEYTLPICDSEFSNPTLLECYLAQENGMSSGFRHVPVTIAAAQKAR-- 158

Query: 61  CDNEKLGNQMISMAHN-VGIQGYQF 85
                    M+SMAH+ V IQ YQF
Sbjct: 159 -------GPMVSMAHDVVDIQDYQF 174

[Close]

BLAST of HG10011213 vs. ExPASy TrEMBL
Match: A0A6J1GBR0 (heavy metal-associated isoprenylated plant protein 37-like OS=Cucurbita moschata OX=3662 GN=LOC111452718 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.6e-13
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1   MKDAADPSYSFQNQYMFPIFDREFNNRLLFEHYLDQGSGMSSSFRYHPVTTTAAQKARAH 60
           ++DA DPSY+FQN+YM PIFD EFNN  L E YL Q +GMSS FR+ PVT          
Sbjct: 99  LEDAIDPSYTFQNEYMLPIFDSEFNNSTLLECYLAQENGMSSGFRHGPVT---------- 158

Query: 61  CDNEKLGNQMISMAHN-VGIQGYQF 85
              +K    MISMAH+ V IQ YQF
Sbjct: 159 ---QKASGPMISMAHDVVDIQDYQF 170

The following BLAST results are available for this feature:

BLAST of HG10011213 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878146.1	4.8e-43	82.24	uncharacterized protein LOC120070300 [Benincasa hispida]	[more]
XP_031739218.1	6.3e-43	82.24	heavy metal-associated isoprenylated plant protein 28-like [Cucumis sativus] >KG...	[more]
XP_008457088.1	2.6e-41	78.50	PREDICTED: uncharacterized protein LOC103496852 [Cucumis melo] >KAA0060736.1 HMA...	[more]
XP_023525957.1	4.7e-14	56.47	heavy metal-associated isoprenylated plant protein 32-like [Cucurbita pepo subsp...	[more]
KAG7036700.1	1.4e-13	55.29	Heavy metal-associated isoprenylated plant protein 32, partial [Cucurbita argyro...	[more]

BLAST of HG10011213 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6R9	3.0e-43	82.24	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G185130 PE=4 SV...	[more]
A0A5D3BQ38	1.3e-41	78.50	HMA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3C605	1.3e-41	78.50	uncharacterized protein LOC103496852 OS=Cucumis melo OX=3656 GN=LOC103496852 PE=...	[more]
A0A6J1KBU2	4.3e-13	55.29	heavy metal-associated isoprenylated plant protein 32-like OS=Cucurbita maxima O...	[more]
A0A6J1GBR0	5.6e-13	54.12	heavy metal-associated isoprenylated plant protein 37-like OS=Cucurbita moschata...	[more]

BLAST of HG10011213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011213.1	HG10011213.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding