HG10011166 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011166
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LYR motif-containing protein At3g19508
Location	Chr01: 3001331 .. 3001676 (-)
RNA-Seq Expression	HG10011166
Synteny	HG10011166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTGCGGCGGTTACCTAAGGACACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACGGAGCTTATAACCACTCCGTTTGGGTTCTAAACAAGGTCTAACTCTAAATTCTCTAATCTTTCAATTTTGAAATTGTTTTTTTTTCCCTCTCGATTTGTGGATCCTTTTTGAGGGGGCTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAA

mRNA sequence

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTGCGGCGGTTACCTAAGGACACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACGGAGCTTATAACCACTCCGTTTGGGTTCTAAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAA

Coding sequence (CDS)

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTGCGGCGGTTACCTAAGGACACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACGGAGCTTATAACCACTCCGTTTGGGTTCTAAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAA

Protein sequence

MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSVWVLNKYSVDGSAADKLKEICYS

Homology

[Close]

BLAST of HG10011166 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFH AYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of HG10011166 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALRIYGEVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFH AY HS+
Sbjct: 1  MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of HG10011166 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFH AYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of HG10011166 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALRIY EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFH AYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of HG10011166 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 156.8 bits (395), Expect = 8.2e-35
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFH AYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of HG10011166 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-27
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF  AYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of HG10011166 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8  YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSVWVLNK 66
          Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L    ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of HG10011166 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFH AYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of HG10011166 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFH AYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of HG10011166 vs. ExPASy TrEMBL
Match: A0A0A0L970 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.0e-36
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFH AYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of HG10011166 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALRIY EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFH AYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of HG10011166 vs. ExPASy TrEMBL
Match: A0A6P4A9N6 (LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427002 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.0e-35
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFH AYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of HG10011166 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-29
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHGAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF  AYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

The following BLAST results are available for this feature:

BLAST of HG10011166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456173.1	1.4e-37	96.34	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L...	[more]
XP_038898400.1	1.5e-36	95.12	LYR motif-containing protein At3g19508 [Benincasa hispida]	[more]
XP_004140718.1	1.7e-35	92.59	LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica...	[more]
XP_022941949.1	2.8e-35	93.90	LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ...	[more]
XP_015892821.1	8.2e-35	89.02	LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]

BLAST of HG10011166 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3M2	1.0e-27	72.84	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
A9SNJ1	9.5e-10	53.45	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G...	[more]

BLAST of HG10011166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6G8	6.6e-38	96.34	LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C3W4	6.6e-38	96.34	LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P...	[more]
A0A0A0L970	8.0e-36	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1	[more]
A0A6J1FPX9	1.4e-35	93.90	LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6P4A9N6	4.0e-35	89.02	LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427...	[more]

BLAST of HG10011166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19508.1	7.2e-29	72.84	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..56 e-value: 3.6E-5 score: 23.8
None	No IPR available	PANTHER	PTHR36758	OS01G0342800 PROTEIN	coord: 1..81
None	No IPR available	CDD	cd20269	Complex1_LYR_LYRM9	coord: 4..65 e-value: 8.65182E-22 score: 78.0527

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011166.1	HG10011166.1	mRNA