HG10011103 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011103
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionribosome-inactivating protein SNAIf-like
LocationChr01: 2486104 .. 2486352 (-)
RNA-Seq ExpressionHG10011103
SyntenyHG10011103
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTTAACTTCGACTAATCATAAGGAGATCCCAGGACCTTATTCTATGATATTTGCAGTTCCATGCATGCAAGGCAAAGTGGAGCAACAGTGGGAGATGAACGTACAGGATTTCACCATTCACCATCCTGATTCAACATTGGTGTTGGATGTTATTTTAGTTGGAAGGGAGCCATATACACGAAAAATGGTTACTCTCGTTACACGTAATGGTGCTGCTACACAACAATGGACGTTTATGGAATGA

mRNA sequence

ATGTGCTTAACTTCGACTAATCATAAGGAGATCCCAGGACCTTATTCTATGATATTTGCAGTTCCATGCATGCAAGGCAAAGTGGAGCAACAGTGGGAGATGAACGTACAGGATTTCACCATTCACCATCCTGATTCAACATTGGTGTTGGATGTTATTTTAGTTGGAAGGGAGCCATATACACGAAAAATGGTTACTCTCGTTACACGTAATGGTGCTGCTACACAACAATGGACGTTTATGGAATGA

Coding sequence (CDS)

ATGTGCTTAACTTCGACTAATCATAAGGAGATCCCAGGACCTTATTCTATGATATTTGCAGTTCCATGCATGCAAGGCAAAGTGGAGCAACAGTGGGAGATGAACGTACAGGATTTCACCATTCACCATCCTGATTCAACATTGGTGTTGGATGTTATTTTAGTTGGAAGGGAGCCATATACACGAAAAATGGTTACTCTCGTTACACGTAATGGTGCTGCTACACAACAATGGACGTTTATGGAATGA

Protein sequence

MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFME
Homology
[Close]
BLAST of HG10011103 vs. NCBI nr
Match: XP_022149256.1 (ribosome-inactivating protein SNAIf-like [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 9.5e-07
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 1   MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPY 60
           +CLTS++      PY  +    C + K EQ+W +      IHHP S LV+DVI +  +P 
Sbjct: 181 LCLTSSSG---AAPYFFVDVFKC-EDKAEQRWVVETDGGAIHHPGSDLVMDVIPMSNQP- 240

Query: 61  TRKMVTLVTRNGAATQQWTFM 82
             + V L ++NGA TQQWTFM
Sbjct: 241 --QPVVLFSQNGATTQQWTFM 254

[Close]
BLAST of HG10011103 vs. NCBI nr
Match: XP_022149160.1 (nigrin b-like [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 2   CLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYT 61
           CLTS  +     P S+I    C   K  Q+W++N  +F I+HP++ LVLD   V R+P  
Sbjct: 224 CLTSQRN-----PSSVILVSNC-DDKATQRWDINEDNF-IYHPNTNLVLD---VDRKPEG 283

Query: 62  RKMVTLVTRNGAATQQWTFM 82
            ++V + TR+G  TQQWT +
Sbjct: 284 SQIVVIDTRDGTPTQQWTIL 293

[Close]
BLAST of HG10011103 vs. ExPASy TrEMBL
Match: A0A6J1D7U5 (ribosome-inactivating protein SNAIf-like OS=Momordica charantia OX=3673 GN=LOC111017720 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-07
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 1   MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPY 60
           +CLTS++      PY  +    C + K EQ+W +      IHHP S LV+DVI +  +P 
Sbjct: 181 LCLTSSSG---AAPYFFVDVFKC-EDKAEQRWVVETDGGAIHHPGSDLVMDVIPMSNQP- 240

Query: 61  TRKMVTLVTRNGAATQQWTFM 82
             + V L ++NGA TQQWTFM
Sbjct: 241 --QPVVLFSQNGATTQQWTFM 254

[Close]
BLAST of HG10011103 vs. ExPASy TrEMBL
Match: A0A6J1D4Y7 (nigrin b-like OS=Momordica charantia OX=3673 GN=LOC111017650 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 2   CLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYT 61
           CLTS  +     P S+I    C   K  Q+W++N  +F I+HP++ LVLD   V R+P  
Sbjct: 224 CLTSQRN-----PSSVILVSNC-DDKATQRWDINEDNF-IYHPNTNLVLD---VDRKPEG 283

Query: 62  RKMVTLVTRNGAATQQWTFM 82
            ++V + TR+G  TQQWT +
Sbjct: 284 SQIVVIDTRDGTPTQQWTIL 293

The following BLAST results are available for this feature:
BLAST of HG10011103 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149256.19.5e-0741.98ribosome-inactivating protein SNAIf-like [Momordica charantia][more]
XP_022149160.15.8e-0440.00nigrin b-like [Momordica charantia][more]
BLAST of HG10011103 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10011103 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7U54.6e-0741.98ribosome-inactivating protein SNAIf-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1D4Y72.8e-0440.00nigrin b-like OS=Momordica charantia OX=3673 GN=LOC111017650 PE=3 SV=1[more]
BLAST of HG10011103 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.80.10.50coord: 1..81
e-value: 8.4E-10
score: 40.6
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 1..81
score: 14.2425
IPR000772Ricin B, lectin domainCDDcd00161RICINcoord: 1..80
e-value: 8.42254E-6
score: 39.0259
IPR035992Ricin B-like lectinsSUPERFAMILY50370Ricin B-like lectinscoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011103.1HG10011103.1mRNA