HG10011102 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011102
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr01: 2481369 .. 2481698 (-)
RNA-Seq Expression	HG10011102
Synteny	HG10011102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCTTATGGTGTGCATTATCATTGGGGTTATTTCCCTTGCTGCCTACAACACCATGGCGGTTGACACCAACGATCATTTCCCGGTTTGTCGAGCAGTACAAATTGTGAACGGAGGATCTAAACTTCGACAATGTTTAGATTTCAACCCTCCACCTTTGTACAAAGGTTTGAACCCCGACGACGAAGTTCCAGCCGAACTCGTCCCGTGCACAAAGGAAAGACAAAATCAGCTATGGATTTTGTCTCCGGAGGGGTTGATTCGATCCTTGGGGAATTTGTGCTTGATTTATGATCCTTATGCCAACAACAAAAAAATATGTTAA

mRNA sequence

ATGAAGAATCTTATGGTGTGCATTATCATTGGGGTTATTTCCCTTGCTGCCTACAACACCATGGCGGTTGACACCAACGATCATTTCCCGGTTTGTCGAGCAGTACAAATTGTGAACGGAGGATCTAAACTTCGACAATGTTTAGATTTCAACCCTCCACCTTTGTACAAAGGTTTGAACCCCGACGACGAAGTTCCAGCCGAACTCGTCCCGTGCACAAAGGAAAGACAAAATCAGCTATGGATTTTGTCTCCGGAGGGGTTGATTCGATCCTTGGGGAATTTGTGCTTGATTTATGATCCTTATGCCAACAACAAAAAAATATGTTAA

Coding sequence (CDS)

ATGAAGAATCTTATGGTGTGCATTATCATTGGGGTTATTTCCCTTGCTGCCTACAACACCATGGCGGTTGACACCAACGATCATTTCCCGGTTTGTCGAGCAGTACAAATTGTGAACGGAGGATCTAAACTTCGACAATGTTTAGATTTCAACCCTCCACCTTTGTACAAAGGTTTGAACCCCGACGACGAAGTTCCAGCCGAACTCGTCCCGTGCACAAAGGAAAGACAAAATCAGCTATGGATTTTGTCTCCGGAGGGGTTGATTCGATCCTTGGGGAATTTGTGCTTGATTTATGATCCTTATGCCAACAACAAAAAAATATGTTAA

Protein sequence

MKNLMVCIIIGVISLAAYNTMAVDTNDHFPVCRAVQIVNGGSKLRQCLDFNPPPLYKGLNPDDEVPAELVPCTKERQNQLWILSPEGLIRSLGNLCLIYDPYANNKKIC

Homology

The following BLAST results are available for this feature:

BLAST of HG10011102 vs.


Match Name	E-value	Identity	Description

BLAST of HG10011102 vs.


Match Name	E-value	Identity	Description

BLAST of HG10011102 vs.


Match Name	E-value	Identity	Description

BLAST of HG10011102 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 47..97 score: 9.678
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 37..108 e-value: 2.52529E-5 score: 38.6407
IPR035992	Ricin B-like lectins	SUPERFAMILY	50370	Ricin B-like lectins	coord: 35..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011102.1	HG10011102.1	mRNA