HG10011076 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011076
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L30
Location	Chr01: 2137905 .. 2138141 (-)
RNA-Seq Expression	HG10011076
Synteny	HG10011076

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCGCAAAGAAGACGAAGAAGATCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAAACCTTGAGGAACTCTAAAGGTAAGCTAATTATCATTGCCACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATACTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAG

mRNA sequence

ATGGTGGCCGCAAAGAAGACGAAGAAGATCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAAACCTTGAGGAACTCTAAAGGTAAGCTAATTATCATTGCCACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATACTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAG

Coding sequence (CDS)

ATGGTGGCCGCAAAGAAGACGAAGAAGATCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAAACCTTGAGGAACTCTAAAGGTAAGCTAATTATCATTGCCACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATACTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAG

Protein sequence

MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTEAM

Homology

[Close]

BLAST of HG10011076 vs. NCBI nr
Match: TYI76307.1 (hypothetical protein E1A91_D06G067000v1 [Gossypium mustelinum])

HSP 1 Score: 103.6 bits (257), Expect = 7.9e-19
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRS 60
          MVAAKKTKK HESIN RLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA   L   S RS
Sbjct: 1  MVAAKKTKKTHESINTRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCLLLGSRRS 60

Query: 61 NTMRCWQRLEFTITTEA 78
          + M C  +LEFT T EA
Sbjct: 61 SIMPCCAKLEFTTTMEA 77

[Close]

BLAST of HG10011076 vs. NCBI nr
Match: MBO8589876.1 (ribosomal L7Ae/L30e/S12e/Gadd45 family protein [Staphylococcus aureus])

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-16
Identity = 54/76 (71.05%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRS 60
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA           
Sbjct: 8  MVAAKKTKKSHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 67

Query: 61 NTMRCWQRLEFTITTE 77
              C QRLEF I  E
Sbjct: 68 EYYACCQRLEFIILME 83

[Close]

BLAST of HG10011076 vs. NCBI nr
Match: XP_004251199.1 (60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal protein L30 [Solanum pennellii] >XP_016548732.1 PREDICTED: 60S ribosomal protein L30 [Capsicum annuum])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. NCBI nr
Match: XP_008451087.1 (PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09919.1 60S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. NCBI nr
Match: XP_009631814.1 (60S ribosomal protein L30-like [Nicotiana tomentosiformis] >XP_009780771.1 PREDICTED: 60S ribosomal protein L30-like [Nicotiana sylvestris] >XP_016434249.1 PREDICTED: 60S ribosomal protein L30-like [Nicotiana tabacum] >XP_016467820.1 PREDICTED: 60S ribosomal protein L30-like [Nicotiana tabacum] >XP_019265245.1 PREDICTED: 60S ribosomal protein L30-like [Nicotiana attenuata])

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-17
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-15
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT 51
          MVAAKKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Sbjct: 1  MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISS 50

[Close]

BLAST of HG10011076 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT 51
          MV  KKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+T
Sbjct: 1  MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILIST 50

[Close]

BLAST of HG10011076 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-13
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT 51
          MVA KK KK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Sbjct: 1  MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISS 50

[Close]

BLAST of HG10011076 vs. ExPASy TrEMBL
Match: A0A5D2UFA5 (Ribosomal_L7Ae domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G067000v1 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.8e-19
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRS 60
          MVAAKKTKK HESIN RLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA   L   S RS
Sbjct: 1  MVAAKKTKKTHESINTRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCLLLGSRRS 60

Query: 61 NTMRCWQRLEFTITTEA 78
          + M C  +LEFT T EA
Sbjct: 61 SIMPCCAKLEFTTTMEA 77

[Close]

BLAST of HG10011076 vs. ExPASy TrEMBL
Match: A0A1S3X2T9 (60S ribosomal protein L30-like OS=Nicotiana tabacum OX=4097 GN=LOC107760678 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. ExPASy TrEMBL
Match: A0A5D3CI16 (60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00350 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. ExPASy TrEMBL
Match: A0A0V0GYL7 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 50
          MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA 49

[Close]

BLAST of HG10011076 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 80.1 bits (196), Expect = 8.7e-16
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT 51
          MVAAKKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Sbjct: 1  MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISS 50

[Close]

BLAST of HG10011076 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 77.8 bits (190), Expect = 4.3e-15
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT 51
          MV  KKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+T
Sbjct: 1  MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILIST 50

[Close]

BLAST of HG10011076 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-14
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT 51
          MVA KK KK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Sbjct: 1  MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISS 50

The following BLAST results are available for this feature:

BLAST of HG10011076 vs. NCBI nr


Match Name	E-value	Identity	Description
TYI76307.1	7.9e-19	75.32	hypothetical protein E1A91_D06G067000v1 [Gossypium mustelinum]	[more]
MBO8589876.1	3.7e-16	71.05	ribosomal L7Ae/L30e/S12e/Gadd45 family protein [Staphylococcus aureus]	[more]
XP_004251199.1	5.3e-15	97.96	60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal p...	[more]
XP_008451087.1	5.3e-15	97.96	PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal ...	[more]
XP_009631814.1	5.3e-15	97.96	60S ribosomal protein L30-like [Nicotiana tomentosiformis] >XP_009780771.1 PREDI...	[more]

BLAST of HG10011076 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49884	7.6e-17	93.88	60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1	[more]
Q9M5M6	5.5e-15	85.71	60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1	[more]
Q9C8F7	1.2e-14	82.00	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P...	[more]
Q8VZ19	6.1e-14	80.00	60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1	[more]
Q9LSA3	1.8e-13	78.00	60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1	[more]

BLAST of HG10011076 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2UFA5	3.8e-19	75.32	Ribosomal_L7Ae domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A...	[more]
A0A1S3X2T9	2.6e-15	97.96	60S ribosomal protein L30-like OS=Nicotiana tabacum OX=4097 GN=LOC107760678 PE=3...	[more]
A0A5D3CI16	2.6e-15	97.96	60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JJ11	2.6e-15	97.96	60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ...	[more]
A0A0V0GYL7	2.6e-15	97.96	Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]

BLAST of HG10011076 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36240.1	8.7e-16	82.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	4.3e-15	80.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	1.3e-14	78.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 13..52 e-value: 5.0E-8 score: 32.6
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..72 e-value: 9.2E-19 score: 69.1
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 13..52
None	No IPR available	PANTHER	PTHR11449:SF23	60S RIBOSOMAL PROTEIN L30	coord: 1..51
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 1..51
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00709	RIBOSOMAL_L30E_1	coord: 24..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011076.1	HG10011076.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome