HG10011032 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011032
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	EKC/KEOPS complex, subunit Pcc1
Location	Chr01: 1772408 .. 1773994 (-)
RNA-Seq Expression	HG10011032
Synteny	HG10011032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGGTTGTTCTCTCTTTCTCTCTAAGCTCATAAATGTATAATTACGAGTTTTCCTTTGATTGTATGGCATATGCTTTTAAATCGATTTACTTGTAGCACTTGGGTGAGCTTTGCCTCTTTAACTTTATCGTAATTCTCTTCTGATTAATTCGTTTTGTTCTTTCTCTGCTTCACTGCAATTTTCACAAACAAAATAAGAAATGATGATCATCATCATCATGTTCTTGCTCTTGCTCTTGGCAACCCTTTTTTTTTAACCCTGAAATTTCTATTTTTTGTTCCTGAAACATCCAGAGTTTGTGACTAGAGTTGTGTCACAAAAGCTCACCATTGTATGCCTTGAATCTATTATTTAGTGCTTTGAATGACCAAGCACGGGTTTTGATTTATGTTGTTTACGATTTCAGCCTTAGTGTGTTATATTATATATAAACTCTCTACCTACATTTTTTTAAAAATATTCGTGAATGTCTGGCCCAATTTATATGCACCTCGACTAATCTCACGAGACAACCTGCTTAACCCTATAACATTTGAGTGTCGAGGAAACTCGTAGAAAATTAATTCTTAGATAAGTGGCCACCATAGATTGAACCCCTGACCTCTTAGTCATTGTTAGTCATTCATTGAGACTATGTCTCCTTTTTACCATTAAGTCAACCCTTGTAGTTAACACATAGTTAGTGAGACATGCAAATTTCTGTGTTGATGTCTCTACGGTTTACATTTTATGTTTCCTTTTATTGTTGATTTCATAACACTCACATATGTCATTGAATTCTTAATTGTTGAAATGAAATGGACCTTTTTAACTAGCCAAAGCTCTGTTCTTTTGCTGTGGTTTCTGGAAGCCAAAGTTGTTTTTTTTTTAGTCTTGTCAGCGTTCGACAATTGCTATTTGTTTCTGAAATGGTCATTGTAGTTGCTTCTTTCTTTAAAAGAGCAACAACTGTGTTGGATCATACATTGAAAACATGCTATTCAACTCATTGTTAGCGATCTTTCATCTCTTCTAGATTGCCTTCGTAGAGACAGGACAAGTAATTTGCTTCTTTTTCCGAGTGTATTGAATCTGGTTTGCTCTCTGCAGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGGTGCTTCTCGATGATATCAATCTTCACATTGTGCCTCAAAAGTTAACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACGTGAGCCTCTTTTGCTCCTTGCATTCCTAGTTTTTAATGTACTTTATAGCATAATACAGGATTCTTTAGAGCATTAGTAATGCTATTGCACTCTTAATTCCTTGCGATCATATTTTGTAGACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGA

mRNA sequence

ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGA

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGA

Protein sequence

MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF

Homology

[Close]

BLAST of HG10011032 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR+MSVSDGKL
Sbjct: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKT+EDFGQEVDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTVEDFGQEVDF 99

[Close]

BLAST of HG10011032 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >KAA0050520.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa] >TYK11292.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of HG10011032 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 4.2e-41
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           MAPTASVASDGEAKWEF CDFEVDYESEKKASIVYNAL +DKELQPDKVKR M+VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 99
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ +D
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of HG10011032 vs. NCBI nr
Match: XP_004146228.1 (uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetical protein Csa_010241 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

[Close]

BLAST of HG10011032 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-40
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PT SVASDGE  WEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR M+VSDGKL
Sbjct: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ VDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

[Close]

BLAST of HG10011032 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.9e-42
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of HG10011032 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.9e-42
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of HG10011032 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           MAPTASVASDGEAKWEF CDFEVDYESEKKASIVYNAL +DKELQPDKVKR M+VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 99
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ +D
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of HG10011032 vs. ExPASy TrEMBL
Match: A0A0A0L7A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

[Close]

BLAST of HG10011032 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.5e-40
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           MAPTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL++DKELQPDKVKR M+VSDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ +DF
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of HG10011032 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-29
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
          MA T    +  +  W+FSC+ +V +ESE+ A I Y +L +DKELQPDKV+R+MSVS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          S HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ+
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQK 96

The following BLAST results are available for this feature:

BLAST of HG10011032 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895564.1	1.8e-44	95.96	uncharacterized protein LOC120083771 [Benincasa hispida]	[more]
XP_008466840.1	1.4e-41	90.91	PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 P...	[more]
XP_022141079.1	4.2e-41	91.84	uncharacterized protein LOC111011564 [Momordica charantia]	[more]
XP_004146228.1	3.5e-40	89.90	uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetica...	[more]
XP_023553191.1	6.0e-40	88.89	uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10011032 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTG0	6.9e-42	90.91	uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=...	[more]
A0A5D3CJ23	6.9e-42	90.91	EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CHJ5	2.0e-41	91.84	uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A0A0L7A2	1.7e-40	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1	[more]
A0A6J1G2C3	8.5e-40	86.87	uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]

BLAST of HG10011032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53045.1	2.3e-29	62.50	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015419	CTAG/Pcc1 family	PFAM	PF09341	Pcc1	coord: 18..91 e-value: 6.0E-18 score: 64.8
IPR015419	CTAG/Pcc1 family	PANTHER	PTHR31283	EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER	coord: 10..96
None	No IPR available	GENE3D	3.30.310.50		coord: 7..98 e-value: 5.8E-22 score: 79.5
None	No IPR available	PANTHER	PTHR31283:SF5	GEO08993P1	coord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011032.1	HG10011032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process
cellular_component	GO:0000408	EKC/KEOPS complex