HG10011013 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011013
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Matrin-type domain-containing protein
Location	Chr01: 1603586 .. 1611721 (+)
RNA-Seq Expression	HG10011013
Synteny	HG10011013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCTACGCTGCTAGAGGTAACCCGCGCCTCACACGAGGAGGTGGAGCGATTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTACTTCCCTCTCTTCATATACTCCATATTTGCTCTGATTTCTCACTGCTGCCGTTCAACATTTGAGGACCTAATGGGACATGGAAGTTTTAGGTTTTACCTCTCATTTGGTGGAATTTTGTGTTTTCACAGTATATAGGGCGTGTGCATTTGAATTTACGGATTTTTCCATTGGCAACCAAGTTGTTGAATTTGGTTTCGCAGCATTTGGGAAGAGATAGAATTTCTTCAAGTAGCAAACTTTACTGTGATTGTGAAAGTTTATGTATAAATTTTCATTTCGCTTTAGAAGAATTAACTACCTCTTCACTACTAGAGAAGTTTGGATATCAAATGTAGTGGAGTGGTAGCACTACAAATTAAAATTTGCTTCAATTAGGAAGCTTGGTGATGGAAGATTGGGCGATTTTCTTTGAGTTGGGAAAAATGAATTTTACAAAATTCCTTATGTGAATATATTTTCTGATTAGGTAGATGGGTTATTTTGTTTGATTTTTGCTGGTCCCCTTATGTTATTGTTGCTCGATGGTATGCTATTCTTTGATCTGGACTGAACACTTATCTACCCTCTCCCCGCCATTATTGCTTTTGTGTGCAGGTTGAGATTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGGTTATTGGCAATATTTCATTATACTATTGTCTATCCATTTTAGAATTAATGTACATCTTCTGCATGAAAGTTGACGAGTGAATGTAGAAGTGAATATGGAAAAAAAAGATGGAGTTCAAGTACAGCATTCTGTTATTTATTCATCCTAATAAGAGGCAAATTTCATACATAAAATGAAATGGAAGGAAAAAAGTTGGTCATTGCTAGGGAAGTTACAAAAAACTATATACCTACTAGAGCAAAAAATGGAGGTTTATTAGAATAAGTACAAAATAGGCTGTAATTTTTATTTACACCAAGTGGTTAATATAAGGAATTTCTCCCAAGAAGTGTCTAAAGAAATTTTTTTTGCCTAAGAAAACCCTACTGTTTTTTTCAAGCCATATATACAACAAAAATATTCTAACAAAAGTGGGCCACAAAAATTTGACTTCCTTCTGAAATGGGTGCCCATCCAAAATGAGAGCGGGGATGCCTTTCAGGCCGTTTGGAGTGGAGTTGCCCAATCAAAGTTGCTGAAGATAGTTTTTCTACAAATTATAGGCACAAGGGAATTTCTACAAATTATTAGGCATAAGGGCTAGTGAAGAGAAGATGGCATTAAGAAATTACTTTTACATGGCATTGAGATGTTTGGCTTGCTTTGAGGCCGTTGGGAGGCCACCTTCTTGATGTGTCATGTAGAAGAAGTTTCTGTCAATCTCTTCTATGAGGTTTAATAACAACTTTGGCAGTTTGAGGAGGGAAATGTAGTAAGTTGGGAGGTTCAAAAGAATGAGTCACATGAGAGCAAGTCTACTGCCAACCTTTCATGGAGTGGGATGCTGTTTTCCCTTTCAAGCTTGCAAGTAATAGTGTTTGTGAGGTCTGTGTAGAATTGCTTCTTTCAGGAGTTTGATGTTGTGCAAGCTCGCCAGAGGAATGTTTGTTCAATGTTTGGAGAGTTCCTCTCCATCTGCCTTTCAAAGAGAAAGGGCGTTTTTTGTGGTTTGCGGGGGTGTGTGCCCTATTGTGGGATCTTTAGGGAAAGAGGAACAACAAAGTGTTTAGAGGTGCGGATAGGAACCTTGGTGAGGTTCCATGTTTCTCTTTGGCCTTCGGTTTTGAAGACTTTTTGTAATTATTCCCTAGGTAATATCTTACTTAGTTGGAAAATCTTTCTTTAGGGGGTTTTTGCAGGCTTGATTTTTTGTATGTCGTATTATTTCATTTTTCTCTCAATGAAAACAATTGTTTATTAAAAAAAAGGGTTTGCAAGTATGAAGTTTCAAAAGGAGGCTTTGCGAGGGTTATCGCAGAGAAGTAAGCAAAGGTGGGAAGAGGGCCACTTCTACAATACTGTTAATGTAGGTAACTATTGATCTAAGGCTATTTTGGATAATTTGTGTTGAGGAGCTTGGTTTTGGAAAGGTCAAAGTATGGACCCAAGGCTTGGAGCGTAGCCTACTGAGGCAATCTGTTGTTAATAACAAAAGACAAAAGGAGAACCTTGTCCTGTACCTTTAGAAACCAAGATTTTCCTCTTTGGTTGCATGGCTAATGATAGAGAAGTTTGCTTTTGAGATGCAAGTAAAATTCTATTCCCACATTTCTTACCGAAGCCTTTTACTTCTATAATTGCCAAGCTAATTGGCTTCAGGCTTGCCTTTCCTACCTCATATTTTCTAAACCAGGCTTACATGTGTCGATTTGGATGTGATCATACCACCACTAACATATTGAATCACCACTTCACTGTGAAGTGTGTATGGGTGAAGCTAGGTCTTGTTTGGACGACCAACTGGAAAGTTCATTGATGTTCCTATTCTTGCTTCAATTGCAGAGACATGTTTCTTAGAAACTCAGTAAATACAGTACTCGAGTAAATAAGAAAAATAGAATTTTTTGCTCACAGGTAATCTGAATTATTATTTCAAAGTTATCTGCTGCTTTGTATCAAGTTCAATTACTATGTGTGCAGATTCGTGAATACCACAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAACGAGGATGATGGACTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGTCTCTCGATTTCTTCTTATATCTTGAAGTTGCATATAATTGCTTGACTGTAGCTTTTTCATGGTGAACCCTGTAGCTTTTCATTGCCTCGTGGCCTATCAATATATGGAAACTTCTCATGCTCCACATTTGATCATGAAAACAATTCTCATGCTTGTATTTTCATATTTTTACAGTGTTGTGATTGGATTTTGAGTATGAGACACAGCATTCTTATCAAATTAGGATATTTCTATTGCTAGTGATAGGCAGCACCAATTTTTGATATTAATGCATTATACAAATTTGCCACATCTGGATAAAGGTAACTAACGCTCAAGAATTTATTTGGTCATAATAACTAAGAGTTGTTTTTTTTTGTTTTTGTTTGTTTGTTTGTTTTTTTGATGTCATTAGGCCTTATTCCTGCCCTTTATAATAGGGTAGTTTCTGGCTAGGCTCCTTTTCTTGGCGGCCATTTGTGTGGGCCAGACTCTTGTTGGTCTGTGTTTTTGTTGGCCTTTTTTTTGTTGGCTCTCTTGTATTCTTCCAAATTGCCTGAATCCTACACTTTTTTGAATCCAATAGTAGATGTTATGCCAGTAATAACAAGCCGCTGTAAGCTTTCGTTAAGACTTTTAATATTGTCCGAGATAATTCATGAAAGCTTGGTTTCTTGATTAGAAAAAATGCTTTTTTTAACGAAAAAATTCAGAATTTATTGCTTAGCCTTGCCTTAAACCCCCTTTGATATTTTCTATAAGGATAAATTCCAGTCTTGATTAAGCAGTGCTTGTATGCGGGCTTGTGTTGACCAGGGGAGGACATTTTCAGAGAGCTCCCATTTGGTGGGTTGGGTAGAGGATTGTAGGTTTAAATCTTGGTTTGGTTCCAAAATTTTGATACTTATTTTATTTTTATTCTTTTACTTTTAAATGTTTTTCTTAGGACCTTCCTTGAACTTCAAGTAAAAATCTTCTTTGTTCCTTTTGCGCTAAATTTTCGTAGTTCATTTACTAGAAATTTTATATGCATTATGTGGAATTCTCTTCTGAGATACACATATAAGTTTGGTACCGTTTGAAAAGTAGGTGCTGTATGATTTATGTTAAATATTAACATAAAAATTTGAGAACAAGAAGTAAAACGAGCAGTTACAAATTTTGAGGACCAAAACAATATAAATGTGAACTTTCAGGGATCATAGTAGGATTTCCAACATTTCTCGTTACATGCATGGAATGAAATTGGAAATTCCAACTCTCTATATGTATGATGTGTGTCATTCTGTATGTGTATACATATTTCCCGTTTCAGTCATTGACTTGTTTATGTTTTAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTGTACAACCAGTATATTAATTCAAAATTTGGAGAGGCTATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATTTCTCGGAAACTAAAAATTTCAAGGTAAACAGAACAATTTTCTTCCTCAAATATTATCATATTATTGGGTTGGCCTAGTGGTAAAAAAGGAGATATCGTCTCAATAAATAGCTGGGTTTAAACCATGGTGGCGACCTACCTAGGAATTAATATCCTACAAGTTTCCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTGTCCCATGAGATTAGTGAAGGTGCGGGTAAGCTGGTCCGGATACTCACGGATATTAAAAGAAATTATCATACTATTGGTTAATGATTTATTTTAACATGAATAAATGGTGTCTTATTTTGAGTTCTTCTAATATTTACTTTATATACAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCTAAGGTTATTTTATGATACTTTTCTCTCCTAATTTTAACATTCAATTTTCAATTATGCTTTATGCTGCCTTACTTCTTGAAACTAGATCTTAATAGGCTGGTTTCGTGATGGTTTTTTTTGTATGTGGCAATTTTAATCATTTGAAAACATGCTGTTTGCAAGTTAGCTATTGTATTTATGTTTCTATTCGTGATTTTGATTATGTGAGGGTGTTTTGATAGGTTGAATCTGAATTTGAAGAGCGATGGACTATTGGTACAATTGAAGGATGGGAGAACACTGGTCAAGAAAATGGCCATGATTCCGAGCAGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTGGGTCCTGAAAGGTTAAAGGAGGTAAGAAGTGATTTATGGCGCCATATTAGCATAAGTTCTAATTATGGCATTGCCTCTTTCTTTTCCTTTGTTCTTACTTGATTGTTATATCACTTTGTGGCAGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGGTAGTAATTTACTGCCTTTTTGTCCAATATAGGATGTCAGGTGTTGTGAACCTACAATAATTCAAGCATGCTGGTACAGTTTAGGTGCAGATCACTTCCTCCTTTACGGATATATTTTCTCGTGTGAATGCATATCCTCATGTATCTCTCTATGCCTATAAGACTCTCCCTCCCTCCCTCCCTCCCTCCCTATAATGTGGTCGTCTGTATGCTTGGATTTTCCCATATATTATTGCTGATCTAGTGTTTGGTTCCAGAACTAAACCCATCCCTCTTCATGCTAGTTCTGTTATATATGATAAGAATGTTTCTCTCATGATCCTCAACCAATGATAGGTGGAAGACACAACTTTGCTTTCTGACGTCTGTGATGTCATATAATCATACACCACCAAATTTTTTCAACGAATTTTATTTGATTGATTTTACAGTTCATTTGACACCCCTATTCTTTGCAGCATACGCCTCTTCAATTGTTGGACAAAAAACATTTCGCAAAACTGTCTTGGCAACCTATTCAGAATGGGGCAGCTGTGGCTTCACAGAACAATGAAAATTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGCGACCTTCTGGACGAGGTTAGCTTTTGAGAACGATCAAAATGTCCCTTTGATCGCCCGAACCTTCATAATTTATATTCTCAAAATGAATAATTTTGGGACTTCATTTATTTTATTTGTGGCCATTGTCAGACAATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAGGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGTGAGAGACAGTATTACTAAACAAACGTTTTTACTAATTAAATTAATAGAACTTTTGGTCTACATTATTTCTGACATGGTCCATATGGTTACCGTGTTTACATCATCCACAAAAGCATTCCCTGCCTAAAGGTTGGAGAAGTGTTTTGTAAGTTGTGAATTTGATGTTGTGATCTAATATTTATATCAGAAACTTATTTAAACGTTTACACGTGCATCCAAACCTGGCTTACAATAGACTGATTTAACTTAAATACAAGTTCACCAAATTTACTTTCTTCTTATGAATGACCCGTGTGTGTTTGAAACAATGGTTTACCATGCGTGTTCAAGATCTTTTGTCTCTATGCAAGTATGTTGATGCCCAGCTGGCAAGAAAATTGAGATTTTTAGAAACCGTGTATCAGTTACTTGCTATAAAAATTTTAATACTTAATAGCCTTTTGATATGGCAATTCTGGCAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGTAAAGCATTCTCGCCAAACAAAGTCCTGTAGCATGGGAAAGAAAACAGAGCATATTAGAAGCTTTGAAGCTGTAAACCATCATGGATTGGTCTAGTGGTAAAAAGGGGCCATGGGTTTAATAAAAGCTATCTAAGATTTAATGTTCTACGAGTTTTCTTGGCACCCAAATGTTGTAGGGTCAGATGAATTGTCCTATGAGATTAGTTGAGGTGCGCGCAAACTGACTTGGACACTCACAGATATCAAAAAAGGGGGAAAAAAAGAAGCATACTAACTGTTTGTCATTTCTCATTTCTCCAAAAATGAAATCCTCTTCAAAAAGCACACTTTTCTTTTCAGAGAGCATATCAACAGAACTAGATTTTTATGTGGAATTGACCATATTTGCTGATATTTTGTTTTTTTGTCTTTTCAAGCCAATATGCTAAAGTATATGTGGAAGTGAAACGTGATATACATTTGACTTTCATAAACTTCCTCTTGCCTAATGGCCAATCTCAAGCAATTACATTTCAGAAGCCACGGTTGCACATTTGTTTTCATAAACCGGAGCATGTTGTTGTTGCTTTTGTTTTCAACTTATTGAAGTTCACGTGGAAAGATTTGCTTGAAAATGTGATAATTTTGTGGAACAGGAATTTAAATGTGAGATATGCGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCAATTGAGGTAGGTCTTTGCTACTACTTTGATCTCCTTATTCCGTGTATTTGTTCTTTTTTGTGTAAGAAACTGTAATTTTCATTGATAGATTAAAATGTACTGAAAAAGAAACACCACCAAGGAGGGAGCTTACACATATATACGTTCTCCAAGATGTTGCTGAGGAAAGAATTTAATTGTAAAGAGTAGAAACTAGAAAGGGTACACCAAGATGATCTGACATTTCGACTACATTTTCAATAAAAGATATTTACCCTTTCATTTTGATGTTTTGATGCTGACCATTTAGATATATCAATATGTCAAAAAGTTCAAGTCCATGGTCCGCCTAATTCTTAGAAATGCCTGCATGATTGCAAATTTAATTAAATTCTTTAGTGAGAATATCATGGGCTCGTTATTCACTCTTCTGATCTTTCAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAATGGCGACCAGATCTGGAGGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGATTGATATAA

mRNA sequence

ATGTCGTCTACGCTGCTAGAGGTAACCCGCGCCTCACACGAGGAGGTGGAGCGATTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGAGATTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCACAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAACGAGGATGATGGACTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGGTCAGGCGGGTTGTCCCATGAGATTAGTGAAGGTGCGGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACGCCTCTTCAATTGTTGGACAAAAAACATTTCGCAAAACTGTCTTGGCAACCTATTCAGAATGGGGCAGCTGTGGCTTCACAGAACAATGAAAATTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGCGACCTTCTGGACGAGACAATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAGGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAATGGCGACCAGATCTGGAGGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGATTGATATAA

Coding sequence (CDS)

ATGTCGTCTACGCTGCTAGAGGTAACCCGCGCCTCACACGAGGAGGTGGAGCGATTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGAGATTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCACAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAACGAGGATGATGGACTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGGTCAGGCGGGTTGTCCCATGAGATTAGTGAAGGTGCGGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACGCCTCTTCAATTGTTGGACAAAAAACATTTCGCAAAACTGTCTTGGCAACCTATTCAGAATGGGGCAGCTGTGGCTTCACAGAACAATGAAAATTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGCGACCTTCTGGACGAGACAATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAGGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAATGGCGACCAGATCTGGAGGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGATTGATATAA

Protein sequence

MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEGQAGCPMRLVKVRGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI

Homology

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BLAST of HG10011013 vs. NCBI nr
Match: XP_038875231.1 (splicing factor SF3a60 homolog [Benincasa hispida])

HSP 1 Score: 678.3 bits (1749), Expect = 3.8e-191
Identity = 370/508 (72.83%), Postives = 374/508 (73.62%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTRASHEEVER ERLIVKELQNEP S KDRLLQSHRVRNMIDTIMSTTDKLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPTSAKDRLLQSHRVRNMIDTIMSTTDKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPM----------------------------------RLVKV---- 180
           EEPQIEFSGE   G  +                                  R +K+    
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKISRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFDERWTIGTIEGWENTGQENGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQNGAA ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. NCBI nr
Match: TYK29174.1 (splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 677.9 bits (1748), Expect = 5.0e-191
Identity = 368/508 (72.44%), Postives = 375/508 (73.82%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQNG AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. NCBI nr
Match: XP_011651597.1 (splicing factor SF3a60 homolog [Cucumis sativus] >KGN58266.1 hypothetical protein Csa_017628 [Cucumis sativus])

HSP 1 Score: 675.2 bits (1741), Expect = 3.2e-190
Identity = 367/508 (72.24%), Postives = 375/508 (73.82%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVR+MIDTIMSTT+KLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GL ALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQNG+AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. NCBI nr
Match: XP_008466807.1 (PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo] >KAA0050498.1 splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 674.9 bits (1740), Expect = 4.2e-190
Identity = 367/508 (72.24%), Postives = 374/508 (73.62%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQN  AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. NCBI nr
Match: XP_022140873.1 (splicing factor SF3a60 homolog [Momordica charantia])

HSP 1 Score: 673.7 bits (1737), Expect = 9.4e-190
Identity = 366/508 (72.05%), Postives = 374/508 (73.62%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTRASHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGE-------------------------------------------------- 180
           EEPQIEFSGE                                                  
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 ------------------------------------------------------GQAGCP 240
                                                                 G    P
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 MRLVKV------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           + L+ +                   GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+S +PIQNGAA  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. ExPASy Swiss-Prot
Match: Q9FG01 (Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 8.7e-154
Identity = 298/504 (59.13%), Postives = 332/504 (65.87%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLE TR++HEEVER ERL+V++LQ EP S KDRL+Q HRVR+MI++IM TT+KLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNED-DGLL 120
            YEDKD A  DEIAALGGQT +GTNVFS FYDRLKEIREYH+RHP+ R+VD NED +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEGQAG-----------------------------------CPMRLVKVR- 180
           KEEP I FSGE   G                                    P +L   R 
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQHTVI 240

Query: 241 ---------------------GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKL 300
                                 L ALGLK GGT QQRAERLFLTKHTPL+ LDKKHFA+ 
Sbjct: 241 DLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKKHFARP 300

Query: 301 SWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEA 360
                QNG A ++  +EN K++AL EAK++KLC+LLDETI RTK NIVKKQ+LTYEE+E 
Sbjct: 301 PHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTYEEMEG 360

Query: 361 EREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW 387
           ERE EE   E ESDDE+  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW
Sbjct: 361 EREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW 420

[Close]

BLAST of HG10011013 vs. ExPASy Swiss-Prot
Match: Q9D554 (Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 5.0e-77
Identity = 188/512 (36.72%), Postives = 258/512 (50.39%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYE 63
           T+LE  R  HEE ER   ++ KE+  + ++ +D++   HR R M D  M  +  L ++Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD  RK+E+ A+     SG N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEGQAG-------CPMRLVKVR------------------------ 183
               EE Q  +EF+ E   G       C ++ + ++                        
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 183 KNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSAL 242

Query: 244 ----------------------------GLAALGLKTGGTVQQRAERLFLTKHTPLQLLD 303
                                        L ALGLK GGT+++RA+RLF TK   L+ LD
Sbjct: 243 THAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLD 302

Query: 304 KKHFAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQAL 363
              FAK    P   G     ++ E  K +A +EA+I +  ++L E    T +N+ +KQA 
Sbjct: 303 TSLFAK---NPKSKG---TKRDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQAR 362

Query: 364 TYEEIEAEREEEETQAESESDDEEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCE 387
           T E  E E EEEE  +ESES+DEE + IYNP  LP+GWDGKPIPYWLYKLHGL   + CE
Sbjct: 363 TGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 422

[Close]

BLAST of HG10011013 vs. ExPASy Swiss-Prot
Match: Q12874 (Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.6e-77
Identity = 188/512 (36.72%), Postives = 258/512 (50.39%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYE 63
           T+LE  R  HEE ER   ++ KE+  + ++ +D++   HR R M D  M  +  L ++Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD  RK+E+ A+     SG N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEGQAG-------CPMRLVKVR------------------------ 183
               EE Q  +EF+ E   G       C ++ + ++                        
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 183 KNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSAL 242

Query: 244 ----------------------------GLAALGLKTGGTVQQRAERLFLTKHTPLQLLD 303
                                        L ALGLK GGT+++RA+RLF TK   L+ LD
Sbjct: 243 THAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLD 302

Query: 304 KKHFAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQAL 363
              FAK    P   G     ++ E  K +A +EA+I +  ++L E    T +N+ +KQA 
Sbjct: 303 TSLFAK---NPKSKG---TKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQAR 362

Query: 364 TYEEIEAEREEEETQAESESDDEEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCE 387
           T E  E E EEEE  +ESES+DEE + IYNP  LP+GWDGKPIPYWLYKLHGL   + CE
Sbjct: 363 TGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 422

[Close]

BLAST of HG10011013 vs. ExPASy Swiss-Prot
Match: O46106 (Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.1e-68
Identity = 174/512 (33.98%), Postives = 252/512 (49.22%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYE 63
           TLLE  R  HEE ER  +L+V E   +    K+R+   HR++ +++   ++T +L ++YE
Sbjct: 3   TLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYE 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPA----------------- 123
           DKD+ RK EIAAL     SG N F+ FY RLK+I+++++ HPA                 
Sbjct: 63  DKDNERKAEIAAL-----SGPNEFNEFYARLKQIKQFYKSHPAEVSVPLSVEFDEMIRVY 122

Query: 124 ------------------ARVVDVNE---------------------------------- 183
                              R +D+NE                                  
Sbjct: 123 NNPDDMSALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSFDHVFDIPRERK 182

Query: 184 ---------------DDGLLKEEPQIEFSGE----------------------------- 243
                             +L+ +P ++  GE                             
Sbjct: 183 NREYRIYIETLNDYLHHFILRIQPLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESAL 242

Query: 244 GQAGCPMRLVKV---------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLD 303
              G  + L                    L ALGLK GGT+++RA+RLF TK      LD
Sbjct: 243 ANTGAHLDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGK--STLD 302

Query: 304 KKHFAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQAL 363
               AK   +P    A+  S+ +E  K++A +EA + K  DLL E  A TK+N+ +KQA 
Sbjct: 303 PALMAK---KPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQAR 362

Query: 364 TYEEIEAEREEEETQAESESDDEEQQI-YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCE 387
           T  E + + + E +++++E D +   + YNP  LP+GWDGKPIPYWLYKLHGL   + CE
Sbjct: 363 TGGERD-DSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCE 422

[Close]

BLAST of HG10011013 vs. ExPASy Swiss-Prot
Match: O59706 (Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap61 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.6e-51
Identity = 156/497 (31.39%), Postives = 238/497 (47.89%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MS ++LE  R +HEE+ER ++ IV      P + ++RL   H+    ++    T+ KL+ 
Sbjct: 1   MSESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLV 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
            +E  D  +  E+A +     +  +  + FY  L EI+E+H+++P  +V D+++   +  
Sbjct: 61  SHESSDRLKDQEVARI-----NADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKP 120

Query: 121 EEPQIE-----FSGEGQAGCPM----------RLVKVRGLAALG-LKTGGTVQQ--RAER 180
            +P I+     F GE   G  M           L  V+ ++ L  LK      Q  + E+
Sbjct: 121 SQPGIDEIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIPKPEK 180

Query: 181 ----------------LFLTKHTPLQLLDK------------------------------ 240
                            F  +  PL  LDK                              
Sbjct: 181 NQTYINYITHLYEYLVSFYRRTHPLSNLDKIIAVFDTEFDAAWEAGLPGWYSHNAEAEKD 240

Query: 241 --------------KHFAKLSWQPI-------------QNGAAVASQNNENLKQ-----V 300
                         K F K++                    ++ ++ +N N KQ     +
Sbjct: 241 GKDSTEAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPSTTSNTNEKQKGPKAI 300

Query: 301 ALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQA------------- 360
           A +E  I+KL  LLD+    T++N+V++Q LT  E  AE E  E +A             
Sbjct: 301 ARIEFLIKKLTSLLDDVRKDTRENVVRRQTLTAAERLAEVEAAEREAFEQSTPSVSVEGN 360

Query: 361 -ESESD-DEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFER 387
            + ESD D+E++IYNPLKLP+GWDGKPIP+WL+KLHGLG+EF CEICGNY Y GR+AF++
Sbjct: 361 QDEESDQDDEEKIYNPLKLPLGWDGKPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDK 420

[Close]

BLAST of HG10011013 vs. ExPASy TrEMBL
Match: A0A5D3E065 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003640 PE=3 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 2.4e-191
Identity = 368/508 (72.44%), Postives = 375/508 (73.82%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQNG AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. ExPASy TrEMBL
Match: A0A0A0LDU3 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040 PE=3 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.6e-190
Identity = 367/508 (72.24%), Postives = 375/508 (73.82%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVR+MIDTIMSTT+KLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GL ALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQNG+AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. ExPASy TrEMBL
Match: A0A5A7U5F1 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001400 PE=3 SV=1)

HSP 1 Score: 674.9 bits (1740), Expect = 2.0e-190
Identity = 367/508 (72.24%), Postives = 374/508 (73.62%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQN  AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. ExPASy TrEMBL
Match: A0A1S3CTD5 (splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504129 PE=3 SV=1)

HSP 1 Score: 674.9 bits (1740), Expect = 2.0e-190
Identity = 367/508 (72.24%), Postives = 374/508 (73.62%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTR+SHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEGQAGCPMRLVKV-------------------------------------- 180
           EEPQIEFSGE   G  + L ++                                      
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 ------------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
                                    GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLS QPIQN  AVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. ExPASy TrEMBL
Match: A0A6J1CJ06 (splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.6e-190
Identity = 366/508 (72.05%), Postives = 374/508 (73.62%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLEVTRASHEEVER ERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGE-------------------------------------------------- 180
           EEPQIEFSGE                                                  
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 ------------------------------------------------------GQAGCP 240
                                                                 G    P
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 MRLVKV------------------RGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           + L+ +                   GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+S +PIQNGAA  S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 387
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

[Close]

BLAST of HG10011013 vs. TAIR 10
Match: AT5G06160.1 (splicing factor-related )

HSP 1 Score: 544.7 bits (1402), Expect = 6.2e-155
Identity = 298/504 (59.13%), Postives = 332/504 (65.87%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVE 60
           MSSTLLE TR++HEEVER ERL+V++LQ EP S KDRL+Q HRVR+MI++IM TT+KLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNED-DGLL 120
            YEDKD A  DEIAALGGQT +GTNVFS FYDRLKEIREYH+RHP+ R+VD NED +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEGQAG-----------------------------------CPMRLVKVR- 180
           KEEP I FSGE   G                                    P +L   R 
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQHTVI 240

Query: 241 ---------------------GLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKL 300
                                 L ALGLK GGT QQRAERLFLTKHTPL+ LDKKHFA+ 
Sbjct: 241 DLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKKHFARP 300

Query: 301 SWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEA 360
                QNG A ++  +EN K++AL EAK++KLC+LLDETI RTK NIVKKQ+LTYEE+E 
Sbjct: 301 PHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTYEEMEG 360

Query: 361 EREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW 387
           ERE EE   E ESDDE+  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW
Sbjct: 361 EREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW 420

[Close]

BLAST of HG10011013 vs. TAIR 10
Match: AT4G01000.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 7.6e-04
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 145 LAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAK 182
           L + GLK GGT+++RA RLFL K TPL  L KK  AK
Sbjct: 378 LQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAK 414

The following BLAST results are available for this feature:

BLAST of HG10011013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875231.1	3.8e-191	72.83	splicing factor SF3a60 homolog [Benincasa hispida]	[more]
TYK29174.1	5.0e-191	72.44	splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011651597.1	3.2e-190	72.24	splicing factor SF3a60 homolog [Cucumis sativus] >KGN58266.1 hypothetical protei...	[more]
XP_008466807.1	4.2e-190	72.24	PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo] >KAA0050498.1 ...	[more]
XP_022140873.1	9.4e-190	72.05	splicing factor SF3a60 homolog [Momordica charantia]	[more]

BLAST of HG10011013 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG01	8.7e-154	59.13	Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1	[more]
Q9D554	5.0e-77	36.72	Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2	[more]
Q12874	6.6e-77	36.72	Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1	[more]
O46106	1.1e-68	33.98	Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1	[more]
O59706	3.6e-51	31.39	Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of HG10011013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E065	2.4e-191	72.44	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LDU3	1.6e-190	72.24	Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040...	[more]
A0A5A7U5F1	2.0e-190	72.24	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CTD5	2.0e-190	72.24	splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504129 ...	[more]
A0A6J1CJ06	4.6e-190	72.05	splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE...	[more]

BLAST of HG10011013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06160.1	6.2e-155	59.13	splicing factor-related	[more]
AT4G01000.1	7.6e-04	59.46	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 230..257
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 144..181 e-value: 7.0E-15 score: 54.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..259
None	No IPR available	PANTHER	PTHR12786:SF6	BNAA03G01920D PROTEIN	coord: 1..135
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 144..386
None	No IPR available	PANTHER	PTHR12786:SF6	BNAA03G01920D PROTEIN	coord: 144..386
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 1..135
IPR021966	Splicing factor SF3a60 binding domain	PFAM	PF12108	SF3a60_bindingd	coord: 80..105 e-value: 3.0E-13 score: 49.4
IPR024598	Splicing factor SF3a60 subunit C-terminal	PFAM	PF11931	DUF3449	coord: 207..385 e-value: 6.5E-77 score: 257.6
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 291..322 score: 9.357525

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011013.1	HG10011013.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding