HG10010950 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010950
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 754905 .. 756581 (+)
RNA-Seq ExpressionHG10010950
SyntenyHG10010950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGAACTTCCCTCGTTAAATTGAATTTTCCATTCGGAACTGAAATAGCCGATCCAGTGACAATAAGGTTGGAGCAAGAAATCTCAGGTTGTTTCCTGATTAGTGCTAGAACTTGAGCAAGAGTGCAACAAACTTCAATTACATCAGGATTAAAATCAGTATCCTTTGATAACAAAGAAGCCCCTCATTTACGAGAATAAATTTTTTTTATAAGGCATGAAGGTAGGCTTTTTTAAATTTTGATAGGAAGTTCTGAAAGCTTGAGAATCAGACCTTTACATCGAAATTTTAGGACTATTTGCTACCAAAATAAATGTGGAAGATAAATCTACTCCAATAGAACCATGGAAAACTGATGGCTGCAATAATTGAATGTTCTCATCCAACGGAAGAAGATTATTTTCTGTTAAAACCCTTGAGTATCCTTCAATCTTGGTACTATGCACAGCAATTGATGAAAGTCTGTTGGTCTTCCCAAATTCCTCTTTACTTTTTATTGAAATGGAAGGAATTAAATTCTCCTTGAGGCCCGATGATGGAGAGGCAATAAAAGTTGCAGCACATGGCTTTGAAGAGGAGAATGACTGTTGGACATCCAAAAGAATTTCAGCTTAAATAATCCAAATGTGGACTTTGTTGCTTCAATCCATTCCGTCATTCTCTCGGAATCCTTTTTCAAAGGAGGATCCAAAGATGTTGAATCCATCTTCAAAACCAGTGGAGCCCCACACCCCACCCCCCCCCCCCCCCCCAAACCCCCCAACGCGGATGAGGCAGGCAGCCCAAAGGTTTTTGCCTCTGATAAAGTAAATGCAAGATGTCAATGTCAAAAATCCAGTTTATTGAGGAAAAAGAAGCAAGGTTTTCGTCCATCTTGTGAACCAACAGAAATTATTCAGATTGAAAACATTAATGATTTTAATGATGCAAAAAATGAAGGGTTGACTCTTGATATTCCTCTGAAGATAGTTCAAAAGCTTCGTTCTCTGGACATCTGCTCTACCAAGCTCGTTTCAGCTTCCAAATATAATAACCTCGATCCACTTATGGAAAAGCCCCCAATATATTCTTGCATTGATGGATCTTCTTCAAGCAACCCGAACTTGGCCAGTGATCAGATGGTTTCTTGCCCGGTTTTTCATAAGAAACATTCGGCTCCCAAGAAATTTGCGAGATTGTTAAAGCCATTTCCAAAACACTTTTCTAGAAAGAGGACTAATTTCCTTAGAGCATTCTCAACCTTTGCTAATATAGATCTTTTAGAAGAAAATTGTATAAGAGCTCAAGCTGCAGATGTGGTAGCTAAAAGAGCAGTTTTTTCACCCCCTTCTCCAAAGTTTTTGTAGTCTGTTGTTAAACTCTCTGATTCTACATTTGTGAGAGGCATCCCTTGCTCTTCTACAAGCTCTTCTCAATCAAGGAAGCAACACTCAGATATTGACTCAACAGTAAGTGCTAGTAGTGAAGACTTTGAGGATTCTGAGGTAGAGGTAGACCAAGAGGAACCAAATCTTGTTGACAACTTTGGCAAAGACTTATGTGAATTATTTCAGCCTGAAGAAGTCCCAAAGTCGGTTGTTTTTTATGTCTCTAGATTTCCACCTTTGAACAAATCTGATATTCCATCCAATTTGGTTGATATTGTTGATGCTTGCGAAATTATTTTGGGTTGA

mRNA sequence

ATGGTTGGAACTTCCCTCGTTAAATTGAATTTTCCATTCGGAACTGAAATAGCCGATCCAGTGACAATAAGTTTATTGAGGAAAAAGAAGCAAGGTTTTCGTCCATCTTGTGAACCAACAGAAATTATTCAGATTGAAAACATTAATGATTTTAATGATGCAAAAAATGAAGGGTTGACTCTTGATATTCCTCTGAAGATAGTTCAAAAGCTTCGTTCTCTGGACATCTGCTCTACCAAGCTCGTTTCAGCTTCCAAATATAATAACCTCGATCCACTTATGGAAAAGCCCCCAATATATTCTTGCATTGATGGATCTTCTTCAAGCAACCCGAACTTGGCCAGTGATCAGATGGTTTCTTGCCCGGTTTTTCATAAGAAACATTCGGCTCCCAAGAAATTTGCGAGATTGTTAAAGCCATTTCCAAAACACTTTTCTAGAAAGAGGACTAATTTCCTTAGAGCATTCTCAACCTTTGCTAATATAGATCTTTTAGAAGAAAATTGTATAAGAGCTCAAGCTGCAGATGTGTCTGTTGTTAAACTCTCTGATTCTACATTTGTGAGAGGCATCCCTTGCTCTTCTACAAGCTCTTCTCAATCAAGGAAGCAACACTCAGATATTGACTCAACAGTAAGTGCTAGTAGTGAAGACTTTGAGGATTCTGAGGTAGAGGTAGACCAAGAGGAACCAAATCTTGTTGACAACTTTGGCAAAGACTTATGTGAATTATTTCAGCCTGAAGAAGTCCCAAAGTCGGTTGTTTTTTATGTCTCTAGATTTCCACCTTTGAACAAATCTGATATTCCATCCAATTTGGTTGATATTGTTGATGCTTGCGAAATTATTTTGGGTTGA

Coding sequence (CDS)

ATGGTTGGAACTTCCCTCGTTAAATTGAATTTTCCATTCGGAACTGAAATAGCCGATCCAGTGACAATAAGTTTATTGAGGAAAAAGAAGCAAGGTTTTCGTCCATCTTGTGAACCAACAGAAATTATTCAGATTGAAAACATTAATGATTTTAATGATGCAAAAAATGAAGGGTTGACTCTTGATATTCCTCTGAAGATAGTTCAAAAGCTTCGTTCTCTGGACATCTGCTCTACCAAGCTCGTTTCAGCTTCCAAATATAATAACCTCGATCCACTTATGGAAAAGCCCCCAATATATTCTTGCATTGATGGATCTTCTTCAAGCAACCCGAACTTGGCCAGTGATCAGATGGTTTCTTGCCCGGTTTTTCATAAGAAACATTCGGCTCCCAAGAAATTTGCGAGATTGTTAAAGCCATTTCCAAAACACTTTTCTAGAAAGAGGACTAATTTCCTTAGAGCATTCTCAACCTTTGCTAATATAGATCTTTTAGAAGAAAATTGTATAAGAGCTCAAGCTGCAGATGTGTCTGTTGTTAAACTCTCTGATTCTACATTTGTGAGAGGCATCCCTTGCTCTTCTACAAGCTCTTCTCAATCAAGGAAGCAACACTCAGATATTGACTCAACAGTAAGTGCTAGTAGTGAAGACTTTGAGGATTCTGAGGTAGAGGTAGACCAAGAGGAACCAAATCTTGTTGACAACTTTGGCAAAGACTTATGTGAATTATTTCAGCCTGAAGAAGTCCCAAAGTCGGTTGTTTTTTATGTCTCTAGATTTCCACCTTTGAACAAATCTGATATTCCATCCAATTTGGTTGATATTGTTGATGCTTGCGAAATTATTTTGGGTTGA

Protein sequence

MVGTSLVKLNFPFGTEIADPVTISLLRKKKQGFRPSCEPTEIIQIENINDFNDAKNEGLTLDIPLKIVQKLRSLDICSTKLVSASKYNNLDPLMEKPPIYSCIDGSSSSNPNLASDQMVSCPVFHKKHSAPKKFARLLKPFPKHFSRKRTNFLRAFSTFANIDLLEENCIRAQAADVSVVKLSDSTFVRGIPCSSTSSSQSRKQHSDIDSTVSASSEDFEDSEVEVDQEEPNLVDNFGKDLCELFQPEEVPKSVVFYVSRFPPLNKSDIPSNLVDIVDACEIILG
Homology
BLAST of HG10010950 vs. NCBI nr
Match: KAA0057401.1 (hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK30100.1 hypothetical protein E5676_scaffold216G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-05
Identity = 71/247 (28.74%), Postives = 109/247 (44.13%), Query Frame = 0

Query: 21  VTISLLRKKKQGFRPSCEPTE--IIQIENINDFNDAKNEGLTLDIPLKIVQKLRSL---- 80
           + +S + K ++G  P  +P    I     +++F    N  L + IP K   K  +L    
Sbjct: 86  IRVSQVMKDEEGETPEVDPERGFIKDAGELSNF----NRNLFVFIPRKSQGKFPALCSPE 145

Query: 81  --DICSTKLVSASKYNNLDPLMEKPPIYSCIDGSSSSNPNLASDQMVSCPVFHKKHSAPK 140
              + S  + S+S++N   P   K PI       +S    L  D+ +      K    PK
Sbjct: 146 KPPVQSQSVASSSEFN---PQSNKLPI------GASLRHGLKKDKKL------KSSKVPK 205

Query: 141 KFARLLKPFPKHFSRKRTNFLRAFSTFANIDLLEENCIRAQAADV----SVVKLSDSTFV 200
           +   L KPF K FSRKRT+F  +++   N DLLEE C++ Q   +    SV+  S    +
Sbjct: 206 RNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIVQNKSVISSSSLNHI 265

Query: 201 RGIPCSSTSSSQSRKQ------HSDIDSTVSASSEDFEDSEVEVDQEEPNLVDNFGKDLC 250
                SS +   S  +       S+ +S VS SSED E  E +  +      ++  K L 
Sbjct: 266 NHSSGSSQAHHVSLVRGTRIPLDSEEESVVSVSSEDLERDEDDEIKTSEEFHEDMNKALG 313

BLAST of HG10010950 vs. NCBI nr
Match: XP_038887874.1 (ABC transporter C family member 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-05
Identity = 48/122 (39.34%), Postives = 60/122 (49.18%), Query Frame = 0

Query: 166 EENCIRAQAADVSVVKLSDST--FVRGIPCSSTSSSQSRKQHSDIDSTVSASSEDFEDSE 225
           E  C        S  K+S S+  FVRG   S     Q+ K  SD DS  SAS E+ E SE
Sbjct: 224 EHICPERHVNFFSNFKISGSSVPFVRGTLDSYQDDDQNNKYDSDGDSIASASFEELEKSE 283

Query: 226 VEVDQEEPNLVDNFGKDLCELFQPEEVPKSVVFYVSRFPPLNKSDIPSNLVDIVDACEII 285
            E  QE       +G DL  LFQ  E        VS   P++K +IP NLV +V+ C++I
Sbjct: 284 AENFQEGEETYRRYGSDLQCLFQSGEGQLIGSTGVSSIQPIDKKEIPQNLVSVVEDCDLI 343

BLAST of HG10010950 vs. NCBI nr
Match: XP_038887873.1 (ABC transporter C family member 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-05
Identity = 48/122 (39.34%), Postives = 60/122 (49.18%), Query Frame = 0

Query: 166 EENCIRAQAADVSVVKLSDST--FVRGIPCSSTSSSQSRKQHSDIDSTVSASSEDFEDSE 225
           E  C        S  K+S S+  FVRG   S     Q+ K  SD DS  SAS E+ E SE
Sbjct: 256 EHICPERHVNFFSNFKISGSSVPFVRGTLDSYQDDDQNNKYDSDGDSIASASFEELEKSE 315

Query: 226 VEVDQEEPNLVDNFGKDLCELFQPEEVPKSVVFYVSRFPPLNKSDIPSNLVDIVDACEII 285
            E  QE       +G DL  LFQ  E        VS   P++K +IP NLV +V+ C++I
Sbjct: 316 AENFQEGEETYRRYGSDLQCLFQSGEGQLIGSTGVSSIQPIDKKEIPQNLVSVVEDCDLI 375

BLAST of HG10010950 vs. NCBI nr
Match: XP_038887514.1 (RNA-binding protein 39-like isoform X1 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-04
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0

Query: 132 KKFARLLKPFPKHFSRKRTNFLRAFSTFANIDLLEENCIRAQAADVSVVKLSDSTFVRGI 191
           KK +RLLKPFP+HF RK+T+F  +++T AN DLLEE C++ Q  D    +  +      +
Sbjct: 294 KKHSRLLKPFPEHFIRKKTSFFNSWTTLANSDLLEECCVKVQIPDFFPNRYVEFVDAMSV 353

Query: 192 PCSSTSSSQ 201
           P +   S Q
Sbjct: 354 PMAIALSGQ 362

BLAST of HG10010950 vs. ExPASy TrEMBL
Match: A0A5A7UV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00800 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-06
Identity = 71/247 (28.74%), Postives = 109/247 (44.13%), Query Frame = 0

Query: 21  VTISLLRKKKQGFRPSCEPTE--IIQIENINDFNDAKNEGLTLDIPLKIVQKLRSL---- 80
           + +S + K ++G  P  +P    I     +++F    N  L + IP K   K  +L    
Sbjct: 86  IRVSQVMKDEEGETPEVDPERGFIKDAGELSNF----NRNLFVFIPRKSQGKFPALCSPE 145

Query: 81  --DICSTKLVSASKYNNLDPLMEKPPIYSCIDGSSSSNPNLASDQMVSCPVFHKKHSAPK 140
              + S  + S+S++N   P   K PI       +S    L  D+ +      K    PK
Sbjct: 146 KPPVQSQSVASSSEFN---PQSNKLPI------GASLRHGLKKDKKL------KSSKVPK 205

Query: 141 KFARLLKPFPKHFSRKRTNFLRAFSTFANIDLLEENCIRAQAADV----SVVKLSDSTFV 200
           +   L KPF K FSRKRT+F  +++   N DLLEE C++ Q   +    SV+  S    +
Sbjct: 206 RNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIVQNKSVISSSSLNHI 265

Query: 201 RGIPCSSTSSSQSRKQ------HSDIDSTVSASSEDFEDSEVEVDQEEPNLVDNFGKDLC 250
                SS +   S  +       S+ +S VS SSED E  E +  +      ++  K L 
Sbjct: 266 NHSSGSSQAHHVSLVRGTRIPLDSEEESVVSVSSEDLERDEDDEIKTSEEFHEDMNKALG 313

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0057401.11.3e-0528.74hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK301... [more]
XP_038887874.13.6e-0539.34ABC transporter C family member 2-like isoform X2 [Benincasa hispida][more]
XP_038887873.13.6e-0539.34ABC transporter C family member 2-like isoform X1 [Benincasa hispida][more]
XP_038887514.13.1e-0442.03RNA-binding protein 39-like isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UV766.1e-0628.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010950.1HG10010950.1mRNA