HG10010912 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010912
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	Chr01: 267053 .. 269876 (+)
RNA-Seq Expression	HG10010912
Synteny	HG10010912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCCTTTTGATCTCTTGGTCGACGACGACAACGAGGACCCTAATCAGCTTGCTTCTGCTCAGCGGTCCGCTCCGCCTCTCCCGTCTAAGAAAGCCCCTGCTCCGGTTCAGCCTGCCAAACCGGCTAAGCTTCCTTCCAAGCCGCTCCCTCCTGCTCAGGCTGGTGGGTTTTGTTTCTTGACTTATACTCTTGTTTATTTGTCTGTTTTTTTTCTTTTCGGTTTTGTGATTTGTTTGAATGTGAAGTAGAAACGATTAACTTTTCAATCCGTTCGCCTATTATTTTGCCATCTATATTGTGTTTTCCCTTTCTGGGACTTCTGGTAATGAGTTCTACTTTGTTGTAATGCTCGACTTGATTTATTGTGAAGTTCCTTTGTAGTTCTGTTGTTTCTTATTTGTTTTTTTTTTAATTGAGCCGATTGTATAAGATAATGTATGGTGCTTTTCTGCCCTGCGATTGATTGGTAAAGCTGAGTTTTGTTACAGTAATTTTAATGTGAATACAAGTGTATTGATAATGATATTATTTTTTTTGAATTTATGTCCTATCTGCATTGACAATGATTTGAAAAGAATATTAGTAGTTCTTATTATTCATCCTTGATGGTCTTTTTGTAAATGCTAAGACGAAGTTAGAAGTTTGAACAAAATTTAAAATGGGATCGATATATTGAAAATATGCTATTGGAATAGATAATTACTTTGTTGTGGATATCATATAAAAGGAGGTCCTTTATGCTTCCTTCATTGGTATATTGAACTTCAATTTCCCATGCTATATAACTGCCTTGGGAGGAGCAGGTAAATCTGAAGAGGTATTTGCATAAGTAGTCAATACTGCAGTTCCTTTCTATTAGTATAATGTTGAAAGTTAAGATTCATGATGCTGATTTTAATAATGTTAAAAGCGTAGTCGGTAATTCACGAATGTTATCTGGTTGAATTCTTTTTCTTTTTCTTATCAATATGACTTTGATTTTCTTTAATATAATCTAACTTTGGGTATTATTATCATTTTTATTTATGACCAGTTAGGGAGTCAAAGAATGAAAATAGCCGTGGTCGTGGAGGTGGTCGTGGCTTTGGGCGAGGGCGTGGTGGTGGTGGAGGATTCAATAGAGACTCAGCCAACTATGAAAATGGTGGCAGGAATGGATTCTCTGATCGTTACCAGGCACCCGAGGATGGTGAAAAGGCAGCTGAAAGGCGTGGTTATGGTGGCCCCCGTGGTTCTTTCCGTGGTCCTCGTCGTGGAGGCTTGAGCAATGGTGAAACGGAAGAAGGAGAACGACCCCGAAGAGTATATGAACGCCGCAGTGGAACTGGACGTGGGTCAGTATATTCTTTACTGGGACACCTAGTTTCCAGTTTGATCAATTTATCTGAAAAATTTCTATAGTTATCTTACCCTAAGCTGGTTGTTTTGATTTCAGAAATGAGTTTAAGCGTGATGGGGCTGGTCGAAGGAACTGGGGAGCTCCTGGTGATGAAAATGCCCCGTAAGTACACCTGTCCAATTGTGTGAGACATTAATTGATTTGATTATGTAGCTCTGATATTTATTTGGACTTATGGATATAAGGGATGTGGAAGAGCCTGTTGCTGAAAATGAGAAGAATGTTGCTCCAGAGCAACAATTGGGAGAGGATGGAGTTGCCGATGATAACAACAAGGCCGAGGAGGCTGTGAAGGAACCAGAAGAGAAGGAGCCTGAGGACAAGGTAAGAACTCTTAGTTTCTAGTATTGATATATAGTTTAGTCTGTCATGCCAATTGGCTATATAATTGCTTCCACTATCTTCTTACAGGAGATGACCCTCAAAGAGTACGAGAAGCTCCGAGAAGAGAGTAGGAAACTGCTGGCAAAGACTGAGGTGAGGAAGGCCGAAGTGGATGAGGAATTAGAGAACATGCAGCAGCTTTCCAGCAAGAAAACCAATGATGAAATATTTGCTAAATTGGTGAGGGCTTATCTCCTGTTACTATTACAATTCCAATTTTAGCTCTGCTTTTGTTAACACTACAAAATTTTCTGGTCAGGGTACTGATAAGGATAAGCGCAAGGACATTGCTGACAAGGAGGAGAAAGCTAAGAAAGTATGTATTGTTCTTCGAGAACTCGTTACTGGCTGATCTTTACGAAACTACATATATTATAAATTAACCTAAAATACTGTTTTGTTTTTTAAAAGAACTGTGTTGCCTTATTAGTTGAAGAAGTTTGCAGTTTTGGGTTAAATTTTTCTTGGCCTTTTTTTTTTCACATTGTATGTGATGTACAGAAGATGATCTGAACCACCTCTGTTTCACCTGTTAGTTTTGTTCTCTCATTGTTCGCTCATAGAGAATTTATAGCGTGTGGAACGACCTGACTTGAACAGATCTCATCTTCTATAGGTTGTGTTGGACTGTGTCCTTGAGTTCTGAATTCTAACGTTATGGAATTCAGTTTTCTTATTTATTATGTAAGTGCTACTCTACAATGTATAAGATGTCTCTAGTGGTGTTCGTACCGTTACTGTGGTTTAAGCCCAGCCATGGCTATTGTAGTGAGTGAAATATCTGCTACTCGTGTTCTTTCTGCACTTGCTTTTTATATAACTTATCTGATTGAAGTAACTGTTTTTGATTGTAGTCTGTGACTATAACTGAGTTCCTGAAGCCTGCGGAAGGCGAGAGGTACTACAACCCCGGTGGTCGTGGTAGAGGCCGTGGGCGAGGCTCTAGAGGTGGGTTCAATAACGGAAGCAACAGAATGAATGTGGCAGCCCCCTCCATTGAAGATCCCGGGCAGTTCCCTTCATTGAGTGCTAAGTGA

mRNA sequence

ATGAACCCTTTTGATCTCTTGGTCGACGACGACAACGAGGACCCTAATCAGCTTGCTTCTGCTCAGCGGTCCGCTCCGCCTCTCCCGTCTAAGAAAGCCCCTGCTCCGGTTCAGCCTGCCAAACCGGCTAAGCTTCCTTCCAAGCCGCTCCCTCCTGCTCAGGCTGTTAGGGAGTCAAAGAATGAAAATAGCCGTGGTCGTGGAGGTGGTCGTGGCTTTGGGCGAGGGCGTGGTGGTGGTGGAGGATTCAATAGAGACTCAGCCAACTATGAAAATGGTGGCAGGAATGGATTCTCTGATCGTTACCAGGCACCCGAGGATGGTGAAAAGGCAGCTGAAAGGCGTGGTTATGGTGGCCCCCGTGGTTCTTTCCGTGGTCCTCGTCGTGGAGGCTTGAGCAATGGTGAAACGGAAGAAGGAGAACGACCCCGAAGAGTATATGAACGCCGCAGTGGAACTGGACGTGGAAATGAGTTTAAGCGTGATGGGGCTGGTCGAAGGAACTGGGGAGCTCCTGGTGATGAAAATGCCCCGGATGTGGAAGAGCCTGTTGCTGAAAATGAGAAGAATGTTGCTCCAGAGCAACAATTGGGAGAGGATGGAGTTGCCGATGATAACAACAAGGCCGAGGAGGCTGTGAAGGAACCAGAAGAGAAGGAGCCTGAGGACAAGGAGATGACCCTCAAAGAGTACGAGAAGCTCCGAGAAGAGAGTAGGAAACTGCTGGCAAAGACTGAGGTGAGGAAGGCCGAAGTGGATGAGGAATTAGAGAACATGCAGCAGCTTTCCAGCAAGAAAACCAATGATGAAATATTTGCTAAATTGGGTACTGATAAGGATAAGCGCAAGGACATTGCTGACAAGGAGGAGAAAGCTAAGAAATCTGTGACTATAACTGAGTTCCTGAAGCCTGCGGAAGGCGAGAGGTACTACAACCCCGGTGGTCGTGGTAGAGGCCGTGGGCGAGGCTCTAGAGGTGGGTTCAATAACGGAAGCAACAGAATGAATGTGGCAGCCCCCTCCATTGAAGATCCCGGGCAGTTCCCTTCATTGAGTGCTAAGTGA

Coding sequence (CDS)

ATGAACCCTTTTGATCTCTTGGTCGACGACGACAACGAGGACCCTAATCAGCTTGCTTCTGCTCAGCGGTCCGCTCCGCCTCTCCCGTCTAAGAAAGCCCCTGCTCCGGTTCAGCCTGCCAAACCGGCTAAGCTTCCTTCCAAGCCGCTCCCTCCTGCTCAGGCTGTTAGGGAGTCAAAGAATGAAAATAGCCGTGGTCGTGGAGGTGGTCGTGGCTTTGGGCGAGGGCGTGGTGGTGGTGGAGGATTCAATAGAGACTCAGCCAACTATGAAAATGGTGGCAGGAATGGATTCTCTGATCGTTACCAGGCACCCGAGGATGGTGAAAAGGCAGCTGAAAGGCGTGGTTATGGTGGCCCCCGTGGTTCTTTCCGTGGTCCTCGTCGTGGAGGCTTGAGCAATGGTGAAACGGAAGAAGGAGAACGACCCCGAAGAGTATATGAACGCCGCAGTGGAACTGGACGTGGAAATGAGTTTAAGCGTGATGGGGCTGGTCGAAGGAACTGGGGAGCTCCTGGTGATGAAAATGCCCCGGATGTGGAAGAGCCTGTTGCTGAAAATGAGAAGAATGTTGCTCCAGAGCAACAATTGGGAGAGGATGGAGTTGCCGATGATAACAACAAGGCCGAGGAGGCTGTGAAGGAACCAGAAGAGAAGGAGCCTGAGGACAAGGAGATGACCCTCAAAGAGTACGAGAAGCTCCGAGAAGAGAGTAGGAAACTGCTGGCAAAGACTGAGGTGAGGAAGGCCGAAGTGGATGAGGAATTAGAGAACATGCAGCAGCTTTCCAGCAAGAAAACCAATGATGAAATATTTGCTAAATTGGGTACTGATAAGGATAAGCGCAAGGACATTGCTGACAAGGAGGAGAAAGCTAAGAAATCTGTGACTATAACTGAGTTCCTGAAGCCTGCGGAAGGCGAGAGGTACTACAACCCCGGTGGTCGTGGTAGAGGCCGTGGGCGAGGCTCTAGAGGTGGGTTCAATAACGGAAGCAACAGAATGAATGTGGCAGCCCCCTCCATTGAAGATCCCGGGCAGTTCCCTTCATTGAGTGCTAAGTGA

Protein sequence

MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESKNENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGPRGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDVEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK

Homology

[Close]

BLAST of HG10010912 vs. NCBI nr
Match: XP_008465866.1 (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis melo])

HSP 1 Score: 615.9 bits (1587), Expect = 2.1e-172
Identity = 343/356 (96.35%), Postives = 345/356 (96.91%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQLASAQRSAP LPSKKAPAP QPAKPAKLPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLASAQRSAPALPSKKAPAPAQPAKPAKLPSKPLPPAQAVRESK 63

Query: 61  NENSR-GRGGGRGFGRGR-GGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYG 120
           NENSR GRGGGRGFGRGR GGGGGFNRDSAN EN GRNGFSDRYQ PEDGEKAAERRGYG
Sbjct: 64  NENSRGGRGGGRGFGRGRGGGGGGFNRDSANNENSGRNGFSDRYQTPEDGEKAAERRGYG 123

Query: 121 GPRGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP 180
            PRGSFRGPRRGG SNGE EEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP
Sbjct: 124 APRGSFRGPRRGGFSNGEAEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP 183

Query: 181 DVEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES 240
           DVEEPVAENEKNVAPEQQLGEDGV DDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES
Sbjct: 184 DVEEPVAENEKNVAPEQQLGEDGV-DDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES 243

Query: 241 RKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTI 300
           RKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKD+ADKEE+AKKSVTI
Sbjct: 244 RKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDVADKEERAKKSVTI 303

Query: 301 TEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 355
           TEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK
Sbjct: 304 TEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 358

[Close]

BLAST of HG10010912 vs. NCBI nr
Match: XP_004148350.1 (RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN60476.1 hypothetical protein Csa_001243 [Cucumis sativus])

HSP 1 Score: 615.5 bits (1586), Expect = 2.8e-172
Identity = 338/355 (95.21%), Postives = 341/355 (96.06%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQLASA RSAP LPSKKAPAP QPAKPAKLPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLASAHRSAPVLPSKKAPAPAQPAKPAKLPSKPLPPAQAVRESK 63

Query: 61  NENSR-GRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGG 120
           N+N R GRGGGRGFGRGRGGGGGFNRDSAN ENGGRNGFSDRYQ PEDGEKAAERRGYG 
Sbjct: 64  NDNGRGGRGGGRGFGRGRGGGGGFNRDSANNENGGRNGFSDRYQTPEDGEKAAERRGYGA 123

Query: 121 PRGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPD 180
           PRGSFRGPRR G SNGE EEGERPRRVYERRSGTGRGNEFKR+GAGRRNWGAPGDENAPD
Sbjct: 124 PRGSFRGPRRAGFSNGEAEEGERPRRVYERRSGTGRGNEFKREGAGRRNWGAPGDENAPD 183

Query: 181 VEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESR 240
           VEEPVAENEKNVAPEQQLGEDGV DDNNK EEAVKEPEEKEPEDKEMTLKEYEKLREESR
Sbjct: 184 VEEPVAENEKNVAPEQQLGEDGVVDDNNKTEEAVKEPEEKEPEDKEMTLKEYEKLREESR 243

Query: 241 KLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKD ADKEE+AKKSVTIT
Sbjct: 244 KLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDAADKEERAKKSVTIT 303

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 355
           EFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK
Sbjct: 304 EFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 358

[Close]

BLAST of HG10010912 vs. NCBI nr
Match: XP_022931786.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 581.3 bits (1497), Expect = 5.8e-162
Identity = 332/360 (92.22%), Postives = 338/360 (93.89%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQL SAQRSAP +PSKKAPA  QPAKPA LPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVRESK 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGP 120
           NENSRGRGGGRGFGRGR GGGGFNRDSAN ENGG+NGFSDRYQAPEDGEKA ERRGYGGP
Sbjct: 64  NENSRGRGGGRGFGRGR-GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYGGP 123

Query: 121 RGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDV 180
           RGSFRGPRRGG SNGETEEGE+PRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE APDV
Sbjct: 124 RGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAPDV 183

Query: 181 EEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRK 240
           EEPVAENEKNVAPEQQLGED V DDNNK EEAVKE EEKEPEDKEMTLKEYEKLREESRK
Sbjct: 184 EEPVAENEKNVAPEQQLGEDSVVDDNNK-EEAVKEAEEKEPEDKEMTLKEYEKLREESRK 243

Query: 241 LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITE 300
           LLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKDIADKEEKAKKSVTITE
Sbjct: 244 LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTITE 303

Query: 301 FLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV----AAPSIEDPGQFPSL-SAK 355
           FLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNRMNV    AAPSIED GQFPSL SAK
Sbjct: 304 FLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSAK 361

[Close]

BLAST of HG10010912 vs. NCBI nr
Match: KAG6571794.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 580.9 bits (1496), Expect = 7.6e-162
Identity = 332/361 (91.97%), Postives = 338/361 (93.63%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQL SAQRSAP +PSKKAPA  QPAKPA LPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVRESK 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGP 120
           NENSRGRGGGRGFGRGR GGGGFNRDSAN ENGG+NGFSDRYQAPEDGEKA ERRGYGGP
Sbjct: 64  NENSRGRGGGRGFGRGR-GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYGGP 123

Query: 121 RGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDV 180
           RGSFRGPRRGG SNGETEEGE+PRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE APDV
Sbjct: 124 RGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAPDV 183

Query: 181 EEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRK 240
           EEPVAENEKNVAPEQQLGED V DDNNK EEAVKE EEKEPEDKEMTLKEYEKLREESRK
Sbjct: 184 EEPVAENEKNVAPEQQLGEDSVVDDNNK-EEAVKEAEEKEPEDKEMTLKEYEKLREESRK 243

Query: 241 LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITE 300
           LLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKDIADKEEKAKKSVTITE
Sbjct: 244 LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTITE 303

Query: 301 FLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV-----AAPSIEDPGQFPSL-SA 355
           FLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNRMNV     AAPSIED GQFPSL SA
Sbjct: 304 FLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAAPSIEDQGQFPSLMSA 362

[Close]

BLAST of HG10010912 vs. NCBI nr
Match: XP_023554179.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 577.0 bits (1486), Expect = 1.1e-160
Identity = 329/360 (91.39%), Postives = 336/360 (93.33%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQL SAQRSAP +PSKKAP+  QPAKPA LPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPSLAQPAKPANLPSKPLPPAQAVRESK 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGP 120
           NENSRGRGGGRGFGRGR GGGGFNRDSAN ENGG+NGFSDRYQAPEDGEKA ERRGYGGP
Sbjct: 64  NENSRGRGGGRGFGRGR-GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYGGP 123

Query: 121 RGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDV 180
           RGSFRGPRRGG SNGETEEGE+PRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE APDV
Sbjct: 124 RGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAPDV 183

Query: 181 EEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRK 240
           EEPVAENEKNVAPEQQLGEDG  DDNNK EEA KE EEKEPEDKEMTLKEYEKLREESRK
Sbjct: 184 EEPVAENEKNVAPEQQLGEDGAVDDNNK-EEAAKEAEEKEPEDKEMTLKEYEKLREESRK 243

Query: 241 LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITE 300
           LLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKDIADKEEKAKKSVTITE
Sbjct: 244 LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTITE 303

Query: 301 FLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV----AAPSIEDPGQFPSL-SAK 355
           FLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNRM V    AAPSIED GQFPSL SAK
Sbjct: 304 FLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMTVAAAAAAPSIEDQGQFPSLMSAK 361

[Close]

BLAST of HG10010912 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.2e-69
Identity = 204/371 (54.99%), Postives = 242/371 (65.23%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPA-KLPSKPLPPAQAVRES 60
           +NPFDLL DDD EDP+QLA A         K       PAK A KLPSKPLPPAQAVRE+
Sbjct: 4   LNPFDLL-DDDAEDPSQLAVAIEKIDK-SKKSGQVSSLPAKSAPKLPSKPLPPAQAVREA 63

Query: 61  KNENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAP----EDGEKAAERR 120
           +++  RG GG  GF RGR   GG+NRD       G NG+S  Y  P    +  + + ERR
Sbjct: 64  RSDAPRGGGGRGGFNRGR---GGYNRDD------GNNGYSGGYTKPSGEGDVSKSSYERR 123

Query: 121 GYGG-PRGSFRGP-------RRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRR 180
           G GG PRGSFRG        RRGG SN E  +GERPRR +ERRSGTGRG++FKRDG+GR 
Sbjct: 124 GGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSGRG 183

Query: 181 NWGAPGDENAPDVEEPV-AENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEM 240
           NWG PG+E A + E     E EK+V  +  +  D VA D NK +  V   EEKEPEDKEM
Sbjct: 184 NWGTPGEEIAAETEAVAGVETEKDVGEKPAV--DDVAADANKEDTVV---EEKEPEDKEM 243

Query: 241 TLKEYEKLREESRKLLAKTEVRKAEVDEEL-ENMQQLSSKKTNDEIFAKLGTDKDKRKDI 300
           TL EYEK+ EE +K L      + +VD ++ E+MQQLS+KK+NDEIF KLG+DKDKRKD 
Sbjct: 244 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 303

Query: 301 ADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSN--RMNVAAPSIE 355
            DKEEKAKK+V+I EFLKPAEG  YY  G  GRGRG   RGG ++G +    N AAP+I 
Sbjct: 304 -DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIG 355

[Close]

BLAST of HG10010912 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.7e-68
Identity = 181/302 (59.93%), Postives = 218/302 (72.19%), Query Frame = 0


Query: 66  GRGGGRGFGRGR--GGGGGFNRDSANYEN--GGRNGFSDRYQAPEDGE--KAAERR-GYG 125
           GRGG RG GRGR  G G GFN++SA+ EN  G  NGFS RY+  EDGE  K +ERR GYG
Sbjct: 4   GRGGPRGGGRGRGPGRGRGFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGGYG 63

Query: 126 GPRGSFRGPRRGGLSNGETE--EGERPRRVYERRSGTGRGNEF-KRDGAGRRNWGAPGDE 185
           GPRG F G RRGG +NG+    EGERPRRV++RRSGTGRGNE+ KR+G+GR NWG P D+
Sbjct: 64  GPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPADD 123

Query: 186 NAPDVEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLR 245
            A + E PV + EK V  E++ G++  A+D NK +    EPEEKEPE+KEMTL+EYEKL 
Sbjct: 124 IAQETEVPVNDGEKIVEAEKEAGQE-EAEDTNK-DSTAAEPEEKEPEEKEMTLEEYEKLM 183

Query: 246 EESRK--LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAK 305
           EE RK  L  K E RK  +D+ELE+MQ LS+KK +DEIF KLG++K+KRK+     EKA+
Sbjct: 184 EEKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAV---EKAR 243

Query: 306 KSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNG-SNRMNVAAPSIEDPGQFPSLS 355
           K+ +I EFLKPAEGE Y   GGRGRG GRG RGGF  G     + +APSIED GQFPSL 
Sbjct: 244 KTQSINEFLKPAEGENYSRRGGRGRGPGRG-RGGFGGGVGGNKSFSAPSIEDVGQFPSLV 299

[Close]

BLAST of HG10010912 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.3e-60
Identity = 188/363 (51.79%), Postives = 234/363 (64.46%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           +NPFDLL  DD EDP+QLA A         +KA A VQP K AK P+KP PP+QAVRES+
Sbjct: 4   LNPFDLL-GDDAEDPSQLAVALSQ----KVEKAAAAVQPPKAAKFPTKPAPPSQAVRESR 63

Query: 61  NENSRGRG--GGR-GFGRGRGGGGGFNRDSANYE-NGGRNGFSDRYQAP-EDGEKAAERR 120
           N    GRG  GGR GF RGR G GG+NRD+ N +  G  NGFS  Y+ P ED + A+   
Sbjct: 64  NAPQGGRGGTGGRGGFSRGR-GNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGASRGG 123

Query: 121 GYGGPR--GSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180
             GG R  G   GPRRGG++NGE+ + ERP R Y+R S TG G   KR+G GR NWG   
Sbjct: 124 SVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGTTE 183

Query: 181 DENAPDVEEPVAENEKNVAPEQQLGEDGVADDNNK--AEEAVKEPEEKEPEDKEMTLKEY 240
           D+  P  EEP  E EK+   E+Q GED   +   +  AEE  ++ E +E E +EMTL+EY
Sbjct: 184 DDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQK-EAEEAEAREMTLEEY 243

Query: 241 EKLREESRKLLAKTEVRKAEVDEEL-ENMQQLSSKK-TNDEIFAKLGTDKDKRKDIADKE 300
           EK+ EE +K L  T+V + +VD ++ E+MQQLS+KK T++EIF KLG+DK+KRKD     
Sbjct: 244 EKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT--- 303

Query: 301 EKAKKSVTITEFLKPAEGERYYNPGGRGRGR-GRGSRGGFNNGSNRMNVAAPSIEDPGQF 352
           EKAKKS++I EFLKPA+G+RY   GG  RGR GRG RG   N       AAP+I D  QF
Sbjct: 304 EKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEAAAPAIGDTAQF 356

[Close]

BLAST of HG10010912 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.3e-59
Identity = 183/372 (49.19%), Postives = 232/372 (62.37%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           +NPFDLL DDD EDP+Q+ +++    PL   K  APVQ AK  K+P+KP PP+QAVRE++
Sbjct: 4   VNPFDLL-DDDAEDPSQIVASK----PL---KVVAPVQTAKSGKMPTKPPPPSQAVREAR 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYEN-GGRNGFSDRYQAPEDGEKAAERRGYGG 120
           N    GRG GRG   GRGG GG NRDS N +     NG+   Y+  E+G+ A  RR  GG
Sbjct: 64  NAPGGGRGAGRGGSYGRGGRGGNNRDSRNNDGPANENGYGGGYRRSEEGDGA--RR--GG 123

Query: 121 PRGSFRGPRRGGLSN-GETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP 180
           P G +RG RRG  SN G++ + ERPR+ Y+R S T  GNE KRDGAGR NWG   D+  P
Sbjct: 124 PVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQDDITP 183

Query: 181 DVEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES 240
             EE  A  +KN+  E+Q GE    D  N   E   E  E++PEDKEMTL+EYEK+ EE 
Sbjct: 184 VTEESTAVVDKNLTVEKQDGEGEATDAKN---ETPAEKAEEKPEDKEMTLEEYEKVLEEK 243

Query: 241 RKLLAKTEVRKAEVD-EELENMQQLSSKKT-NDEIFAKLGTDKDKRKDIADKEEKAKKSV 300
           +K L  T+V + +VD +  E MQQLSSKK+ NDE+F KLGT+KDKR  I ++EEK +KS+
Sbjct: 244 KKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTRKSL 303

Query: 301 TITEFLKPAEGERYYNPGG--RGRGRGRGSR-------------GGFN--NGSNRMNVAA 352
           +I EFLKPA+G+ YY P G  +G   GRG R             GG N  +G        
Sbjct: 304 SINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQAPT 358

[Close]

BLAST of HG10010912 vs. ExPASy TrEMBL
Match: A0A1S3CPW2 (plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103503456 PE=4 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 1.0e-172
Identity = 343/356 (96.35%), Postives = 345/356 (96.91%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQLASAQRSAP LPSKKAPAP QPAKPAKLPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLASAQRSAPALPSKKAPAPAQPAKPAKLPSKPLPPAQAVRESK 63

Query: 61  NENSR-GRGGGRGFGRGR-GGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYG 120
           NENSR GRGGGRGFGRGR GGGGGFNRDSAN EN GRNGFSDRYQ PEDGEKAAERRGYG
Sbjct: 64  NENSRGGRGGGRGFGRGRGGGGGGFNRDSANNENSGRNGFSDRYQTPEDGEKAAERRGYG 123

Query: 121 GPRGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP 180
            PRGSFRGPRRGG SNGE EEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP
Sbjct: 124 APRGSFRGPRRGGFSNGEAEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP 183

Query: 181 DVEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES 240
           DVEEPVAENEKNVAPEQQLGEDGV DDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES
Sbjct: 184 DVEEPVAENEKNVAPEQQLGEDGV-DDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES 243

Query: 241 RKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTI 300
           RKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKD+ADKEE+AKKSVTI
Sbjct: 244 RKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDVADKEERAKKSVTI 303

Query: 301 TEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 355
           TEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK
Sbjct: 304 TEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 358

[Close]

BLAST of HG10010912 vs. ExPASy TrEMBL
Match: A0A0A0LKF6 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914560 PE=4 SV=1)

HSP 1 Score: 615.5 bits (1586), Expect = 1.4e-172
Identity = 338/355 (95.21%), Postives = 341/355 (96.06%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQLASA RSAP LPSKKAPAP QPAKPAKLPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLASAHRSAPVLPSKKAPAPAQPAKPAKLPSKPLPPAQAVRESK 63

Query: 61  NENSR-GRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGG 120
           N+N R GRGGGRGFGRGRGGGGGFNRDSAN ENGGRNGFSDRYQ PEDGEKAAERRGYG 
Sbjct: 64  NDNGRGGRGGGRGFGRGRGGGGGFNRDSANNENGGRNGFSDRYQTPEDGEKAAERRGYGA 123

Query: 121 PRGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPD 180
           PRGSFRGPRR G SNGE EEGERPRRVYERRSGTGRGNEFKR+GAGRRNWGAPGDENAPD
Sbjct: 124 PRGSFRGPRRAGFSNGEAEEGERPRRVYERRSGTGRGNEFKREGAGRRNWGAPGDENAPD 183

Query: 181 VEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESR 240
           VEEPVAENEKNVAPEQQLGEDGV DDNNK EEAVKEPEEKEPEDKEMTLKEYEKLREESR
Sbjct: 184 VEEPVAENEKNVAPEQQLGEDGVVDDNNKTEEAVKEPEEKEPEDKEMTLKEYEKLREESR 243

Query: 241 KLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKD ADKEE+AKKSVTIT
Sbjct: 244 KLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDAADKEERAKKSVTIT 303

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 355
           EFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK
Sbjct: 304 EFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRMNVAAPSIEDPGQFPSLSAK 358

[Close]

BLAST of HG10010912 vs. ExPASy TrEMBL
Match: A0A6J1EUM3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111438060 PE=4 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 2.8e-162
Identity = 332/360 (92.22%), Postives = 338/360 (93.89%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQL SAQRSAP +PSKKAPA  QPAKPA LPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVRESK 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGP 120
           NENSRGRGGGRGFGRGR GGGGFNRDSAN ENGG+NGFSDRYQAPEDGEKA ERRGYGGP
Sbjct: 64  NENSRGRGGGRGFGRGR-GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYGGP 123

Query: 121 RGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDV 180
           RGSFRGPRRGG SNGETEEGE+PRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE APDV
Sbjct: 124 RGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAPDV 183

Query: 181 EEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRK 240
           EEPVAENEKNVAPEQQLGED V DDNNK EEAVKE EEKEPEDKEMTLKEYEKLREESRK
Sbjct: 184 EEPVAENEKNVAPEQQLGEDSVVDDNNK-EEAVKEAEEKEPEDKEMTLKEYEKLREESRK 243

Query: 241 LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITE 300
           LLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKDIADKEEKAKKSVTITE
Sbjct: 244 LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTITE 303

Query: 301 FLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV----AAPSIEDPGQFPSL-SAK 355
           FLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNRMNV    AAPSIED GQFPSL SAK
Sbjct: 304 FLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSAK 361

[Close]

BLAST of HG10010912 vs. ExPASy TrEMBL
Match: A0A6J1I4B3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111470534 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.1e-161
Identity = 329/359 (91.64%), Postives = 335/359 (93.31%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPFDLLVDDDNEDPNQL SAQRSAP +PSKKAPA  QPAKPA LPSKPLPPAQAVRESK
Sbjct: 4   MNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVRESK 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGP 120
           NENSRGRGGGRGFGRGR GGGGFNRDSAN ENGG+NGFSDRYQAPEDGEKA ERRGYGGP
Sbjct: 64  NENSRGRGGGRGFGRGR-GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYGGP 123

Query: 121 RGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDV 180
           RGSFRGPRRGG SNGETEE E+PRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE APDV
Sbjct: 124 RGSFRGPRRGGFSNGETEEAEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAPDV 183

Query: 181 EEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRK 240
           E PVAENEKNVAPEQQLGEDGV DDNNK EEAVKE EEKEPEDKEMTLKEYEKLREESRK
Sbjct: 184 EAPVAENEKNVAPEQQLGEDGVVDDNNK-EEAVKEAEEKEPEDKEMTLKEYEKLREESRK 243

Query: 241 LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITE 300
           LLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKDI DKEEKAKKSVTITE
Sbjct: 244 LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIVDKEEKAKKSVTITE 303

Query: 301 FLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV---AAPSIEDPGQFPSL-SAK 355
           FLKP EGERYYNPGGRGRGRGR GSRGGFNNGSNRMNV   AAPSIED GQFPSL SAK
Sbjct: 304 FLKPTEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAPSIEDQGQFPSLMSAK 360

[Close]

BLAST of HG10010912 vs. ExPASy TrEMBL
Match: A0A6J1K1A6 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111490806 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 8.0e-157
Identity = 315/359 (87.74%), Postives = 333/359 (92.76%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           MNPF+LLVDDDNEDPNQLASAQRSAP  PSKKAPAP QPAK AKLPSKPLPPAQAVRE+K
Sbjct: 4   MNPFNLLVDDDNEDPNQLASAQRSAPAPPSKKAPAPAQPAKAAKLPSKPLPPAQAVREAK 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAPEDGEKAAERRGYGGP 120
           NENSRGRGGGRG+GRGRGGGGGFNRDSAN ENGG+NGFSDRYQ  E+GEK AE+RGYG  
Sbjct: 64  NENSRGRGGGRGYGRGRGGGGGFNRDSANNENGGKNGFSDRYQPTEEGEKEAEKRGYGAS 123

Query: 121 RGSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDV 180
            GSFRGPRRGG SNGETEEGERPRR+YERRSGTGRGNE+KRDGAGRRNWGAPG+E +PDV
Sbjct: 124 YGSFRGPRRGGFSNGETEEGERPRRLYERRSGTGRGNEYKRDGAGRRNWGAPGEEISPDV 183

Query: 181 EEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRK 240
           EEPVAENEK +A EQQLGEDG  ++NNK EEAVKEPEEKEPEDKEMTLKEYEKLREESRK
Sbjct: 184 EEPVAENEKIIASEQQLGEDGDVNNNNK-EEAVKEPEEKEPEDKEMTLKEYEKLREESRK 243

Query: 241 LLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITE 300
           LLAKTE+RKAE+DEELENMQQ+SSKKTNDEIFAKLG DKDKRKD ADKEEKAKKSVTITE
Sbjct: 244 LLAKTELRKAEIDEELENMQQISSKKTNDEIFAKLGADKDKRKDNADKEEKAKKSVTITE 303

Query: 301 FLKPAEGERYYNPGGRGRGRGRGSRGGFN-----NGSNRMNVAAPSIEDPGQFPSLSAK 355
           FLKPA+GERYY+PGGRGRGRGRGSRGG N     NGSNRMNVAAPSIEDPGQFPSLSAK
Sbjct: 304 FLKPAKGERYYSPGGRGRGRGRGSRGGLNNGNGGNGSNRMNVAAPSIEDPGQFPSLSAK 361

[Close]

BLAST of HG10010912 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 265.0 bits (676), Expect = 8.6e-71
Identity = 204/371 (54.99%), Postives = 242/371 (65.23%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPA-KLPSKPLPPAQAVRES 60
           +NPFDLL DDD EDP+QLA A         K       PAK A KLPSKPLPPAQAVRE+
Sbjct: 4   LNPFDLL-DDDAEDPSQLAVAIEKIDK-SKKSGQVSSLPAKSAPKLPSKPLPPAQAVREA 63

Query: 61  KNENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAP----EDGEKAAERR 120
           +++  RG GG  GF RGR   GG+NRD       G NG+S  Y  P    +  + + ERR
Sbjct: 64  RSDAPRGGGGRGGFNRGR---GGYNRDD------GNNGYSGGYTKPSGEGDVSKSSYERR 123

Query: 121 GYGG-PRGSFRGP-------RRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRR 180
           G GG PRGSFRG        RRGG SN E  +GERPRR +ERRSGTGRG++FKRDG+GR 
Sbjct: 124 GGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSGRG 183

Query: 181 NWGAPGDENAPDVEEPV-AENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEM 240
           NWG PG+E A + E     E EK+V  +  +  D VA D NK +  V   EEKEPEDKEM
Sbjct: 184 NWGTPGEEIAAETEAVAGVETEKDVGEKPAV--DDVAADANKEDTVV---EEKEPEDKEM 243

Query: 241 TLKEYEKLREESRKLLAKTEVRKAEVDEEL-ENMQQLSSKKTNDEIFAKLGTDKDKRKDI 300
           TL EYEK+ EE +K L      + +VD ++ E+MQQLS+KK+NDEIF KLG+DKDKRKD 
Sbjct: 244 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 303

Query: 301 ADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSN--RMNVAAPSIE 355
            DKEEKAKK+V+I EFLKPAEG  YY  G  GRGRG   RGG ++G +    N AAP+I 
Sbjct: 304 -DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIG 355

[Close]

BLAST of HG10010912 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-61
Identity = 188/363 (51.79%), Postives = 234/363 (64.46%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           +NPFDLL  DD EDP+QLA A         +KA A VQP K AK P+KP PP+QAVRES+
Sbjct: 4   LNPFDLL-GDDAEDPSQLAVALSQ----KVEKAAAAVQPPKAAKFPTKPAPPSQAVRESR 63

Query: 61  NENSRGRG--GGR-GFGRGRGGGGGFNRDSANYE-NGGRNGFSDRYQAP-EDGEKAAERR 120
           N    GRG  GGR GF RGR G GG+NRD+ N +  G  NGFS  Y+ P ED + A+   
Sbjct: 64  NAPQGGRGGTGGRGGFSRGR-GNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGASRGG 123

Query: 121 GYGGPR--GSFRGPRRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180
             GG R  G   GPRRGG++NGE+ + ERP R Y+R S TG G   KR+G GR NWG   
Sbjct: 124 SVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGTTE 183

Query: 181 DENAPDVEEPVAENEKNVAPEQQLGEDGVADDNNK--AEEAVKEPEEKEPEDKEMTLKEY 240
           D+  P  EEP  E EK+   E+Q GED   +   +  AEE  ++ E +E E +EMTL+EY
Sbjct: 184 DDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQK-EAEEAEAREMTLEEY 243

Query: 241 EKLREESRKLLAKTEVRKAEVDEEL-ENMQQLSSKK-TNDEIFAKLGTDKDKRKDIADKE 300
           EK+ EE +K L  T+V + +VD ++ E+MQQLS+KK T++EIF KLG+DK+KRKD     
Sbjct: 244 EKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT--- 303

Query: 301 EKAKKSVTITEFLKPAEGERYYNPGGRGRGR-GRGSRGGFNNGSNRMNVAAPSIEDPGQF 352
           EKAKKS++I EFLKPA+G+RY   GG  RGR GRG RG   N       AAP+I D  QF
Sbjct: 304 EKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEAAAPAIGDTAQF 356

[Close]

BLAST of HG10010912 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-60
Identity = 183/372 (49.19%), Postives = 232/372 (62.37%), Query Frame = 0


Query: 1   MNPFDLLVDDDNEDPNQLASAQRSAPPLPSKKAPAPVQPAKPAKLPSKPLPPAQAVRESK 60
           +NPFDLL DDD EDP+Q+ +++    PL   K  APVQ AK  K+P+KP PP+QAVRE++
Sbjct: 4   VNPFDLL-DDDAEDPSQIVASK----PL---KVVAPVQTAKSGKMPTKPPPPSQAVREAR 63

Query: 61  NENSRGRGGGRGFGRGRGGGGGFNRDSANYEN-GGRNGFSDRYQAPEDGEKAAERRGYGG 120
           N    GRG GRG   GRGG GG NRDS N +     NG+   Y+  E+G+ A  RR  GG
Sbjct: 64  NAPGGGRGAGRGGSYGRGGRGGNNRDSRNNDGPANENGYGGGYRRSEEGDGA--RR--GG 123

Query: 121 PRGSFRGPRRGGLSN-GETEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAP 180
           P G +RG RRG  SN G++ + ERPR+ Y+R S T  GNE KRDGAGR NWG   D+  P
Sbjct: 124 PVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQDDITP 183

Query: 181 DVEEPVAENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREES 240
             EE  A  +KN+  E+Q GE    D  N   E   E  E++PEDKEMTL+EYEK+ EE 
Sbjct: 184 VTEESTAVVDKNLTVEKQDGEGEATDAKN---ETPAEKAEEKPEDKEMTLEEYEKVLEEK 243

Query: 241 RKLLAKTEVRKAEVD-EELENMQQLSSKKT-NDEIFAKLGTDKDKRKDIADKEEKAKKSV 300
           +K L  T+V + +VD +  E MQQLSSKK+ NDE+F KLGT+KDKR  I ++EEK +KS+
Sbjct: 244 KKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTRKSL 303

Query: 301 TITEFLKPAEGERYYNPGG--RGRGRGRGSR-------------GGFN--NGSNRMNVAA 352
           +I EFLKPA+G+ YY P G  +G   GRG R             GG N  +G        
Sbjct: 304 SINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQAPT 358

[Close]

BLAST of HG10010912 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 229.2 bits (583), Expect = 5.2e-60
Identity = 171/315 (54.29%), Postives = 207/315 (65.71%), Query Frame = 0


Query: 56  VRESKNENSRGRGGGRGFGRGRGGGGGFNRDSANYENGGRNGFSDRYQAP----EDGEKA 115
           VRE++++  RG GG  GF RGR   GG+NRD       G NG+S  Y  P    +  + +
Sbjct: 48  VREARSDAPRGGGGRGGFNRGR---GGYNRDD------GNNGYSGGYTKPSGEGDVSKSS 107

Query: 116 AERRGYGG-PRGSFRGP-------RRGGLSNGETEEGERPRRVYERRSGTGRGNEFKRDG 175
            ERRG GG PRGSFRG        RRGG SN E  +GERPRR +ERRSGTGRG++FKRDG
Sbjct: 108 YERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDG 167

Query: 176 AGRRNWGAPGDENAPDVEEPV-AENEKNVAPEQQLGEDGVADDNNKAEEAVKEPEEKEPE 235
           +GR NWG PG+E A + E     E EK+V  +  +  D VA D NK +  V   EEKEPE
Sbjct: 168 SGRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAV--DDVAADANKEDTVV---EEKEPE 227

Query: 236 DKEMTLKEYEKLREESRKLLAKTEVRKAEVDEEL-ENMQQLSSKKTNDEIFAKLGTDKDK 295
           DKEMTL EYEK+ EE +K L      + +VD ++ E+MQQLS+KK+NDEIF KLG+DKDK
Sbjct: 228 DKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDK 287

Query: 296 RKDIADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSN--RMNVAA 355
           RKD  DKEEKAKK+V+I EFLKPAEG  YY  G  GRGRG   RGG ++G +    N AA
Sbjct: 288 RKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAA 345

[Close]

BLAST of HG10010912 vs. TAIR 10
Match: AT4G16830.2 (Hyaluronan / mRNA binding family )

HSP 1 Score: 192.6 bits (488), Expect = 5.4e-49
Identity = 128/220 (58.18%), Postives = 155/220 (70.45%), Query Frame = 0


Query: 139 EGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDENAPDVEEPV-AENEKNVAPEQQL 198
           +GERPRR +ERRSGTGRG++FKRDG+GR NWG PG+E A + E     E EK+V  +  +
Sbjct: 53  DGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAV 112

Query: 199 GEDGVADDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLREESRKLLAKTEVRKAEVDEEL- 258
             D VA D NK +  V   EEKEPEDKEMTL EYEK+ EE +K L      + +VD ++ 
Sbjct: 113 --DDVAADANKEDTVV---EEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVF 172

Query: 259 ENMQQLSSKKTNDEIFAKLGTDKDKRKDIADKEEKAKKSVTITEFLKPAEGERYYNPGGR 318
           E+MQQLS+KK+NDEIF KLG+DKDKRKD  DKEEKAKK+V+I EFLKPAEG  YY  G  
Sbjct: 173 ESMQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRG 232

Query: 319 GRGRGRGSRGGFNNGSN--RMNVAAPSIEDPGQFPSLSAK 355
           GRGRG   RGG ++G +    N AAP+I D  QFPSL  K
Sbjct: 233 GRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 265

The following BLAST results are available for this feature:

BLAST of HG10010912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465866.1	2.1e-172	96.35	PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis m...	[more]
XP_004148350.1	2.8e-172	95.21	RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN60476.1 hypothet...	[more]
XP_022931786.1	5.8e-162	92.22	RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata]	[more]
KAG6571794.1	7.6e-162	91.97	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
XP_023554179.1	1.1e-160	91.39	RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10010912 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	1.2e-69	54.99	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	6.7e-68	59.93	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
Q9LVT8	2.3e-60	51.79	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
O23593	3.3e-59	49.19	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of HG10010912 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPW2	1.0e-172	96.35	plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=36...	[more]
A0A0A0LKF6	1.4e-172	95.21	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914...	[more]
A0A6J1EUM3	2.8e-162	92.22	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I4B3	9.1e-161	91.64	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1K1A6	8.0e-157	87.74	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of HG10010912 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	8.6e-71	54.99	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	1.6e-61	51.79	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	2.4e-60	49.19	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	5.2e-60	54.29	Hyaluronan / mRNA binding family	[more]
AT4G16830.2	5.4e-49	58.18	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 224..262
None	No IPR available	GENE3D	6.10.140.1040		coord: 141..254 e-value: 5.4E-7 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..228
None	No IPR available	PANTHER	PTHR12299:SF64	PLASMINOGEN ACTIVATOR INHIBITOR 1 RNA-BINDING PROTEIN-LIKE	coord: 1..354
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 143..253 e-value: 3.1E-31 score: 119.8
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 143..252 e-value: 4.0E-23 score: 82.5
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..70 e-value: 1.4E-18 score: 67.5
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010912.1	HG10010912.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding