HG10010900 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010900
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr01: 112409 .. 112561 (+)
RNA-Seq ExpressionHG10010900
SyntenyHG10010900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCTCAAATGTTTATCAATCTTGGGTATGCTTTTAGCATTGGGTGGACAATGCTACGGGCAGCCAGGTGAAGAGGTTCCATTGAGTTCATGGAAGATTAACATTTTGAATGATATGAGCAAAGAGTCGTTGTTTCTTCAAGTCTAA

mRNA sequence

ATGGAAGCTCTCAAATGTTTATCAATCTTGGGTATGCTTTTAGCATTGGGTGGACAATGCTACGGGCAGCCAGGTGAAGAGGTTCCATTGAGTTCATGGAAGATTAACATTTTGAATGATATGAGCAAAGAGTCGTTGTTTCTTCAAGTCTAA

Coding sequence (CDS)

ATGGAAGCTCTCAAATGTTTATCAATCTTGGGTATGCTTTTAGCATTGGGTGGACAATGCTACGGGCAGCCAGGTGAAGAGGTTCCATTGAGTTCATGGAAGATTAACATTTTGAATGATATGAGCAAAGAGTCGTTGTTTCTTCAAGTCTAA

Protein sequence

MEALKCLSILGMLLALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLQV
Homology
[Close]
BLAST of HG10010900 vs. NCBI nr
Match: KAE8651384.1 (hypothetical protein Csa_001671 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 32/49 (65.31%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1   MEALKCLSILGMLLALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLQ 50
           MEALK ++++G++LAL G+C GQPG EVPLSSWK+NILN+M+K+SLF++
Sbjct: 76  MEALKYIAVVGVILALIGECNGQPGAEVPLSSWKVNILNEMTKDSLFIR 124

[Close]
BLAST of HG10010900 vs. NCBI nr
Match: XP_004136435.1 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 32/49 (65.31%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MEALKCLSILGMLLALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLQ 50
          MEALK ++++G++LAL G+C GQPG EVPLSSWK+NILN+M+K+SLF++
Sbjct: 1  MEALKYIAVVGVILALIGECNGQPGAEVPLSSWKVNILNEMTKDSLFIR 49

[Close]
BLAST of HG10010900 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MEALKCLSILGMLLALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLQ 50
          MEALK ++I+ ++LAL G+C GQPG EVPLSSWKINILN+M+K++LFLQ
Sbjct: 1  MEALKYIAIVCVILALIGECNGQPGAEVPLSSWKINILNEMTKDTLFLQ 49

[Close]
BLAST of HG10010900 vs. NCBI nr
Match: KGN60342.2 (hypothetical protein Csa_002569, partial [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MEALKCLSILGMLLALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLQ 50
          MEALK ++I+ ++LAL G+C GQPG EVPLSSWKINILN+M+K++LFLQ
Sbjct: 11 MEALKYIAIVCVILALIGECNGQPGAEVPLSSWKINILNEMTKDTLFLQ 59

The following BLAST results are available for this feature:
BLAST of HG10010900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651384.11.1e-1065.31hypothetical protein Csa_001671 [Cucumis sativus][more]
XP_004136435.11.1e-1065.31S-protein homolog 1-like [Cucumis sativus][more]
XP_004136434.33.3e-1069.39S-protein homolog 1-like [Cucumis sativus][more]
KGN60342.23.3e-1069.39hypothetical protein Csa_002569, partial [Cucumis sativus][more]
BLAST of HG10010900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10010900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10010900 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010900.1HG10010900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus