HG10010835 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010835
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L3
Location	Chr06: 26327016 .. 26329119 (-)
RNA-Seq Expression	HG10010835
Synteny	HG10010835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCATATCATTTTCAACAGCTTCAACCTCAACCAGACATTCAATTTTCACTAACAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTCCTCCACTTCTTCATCTCTGACACTCGGAACTTCTTTCCTCGCCCTTCCTCTGAAATCCCGCCACAACAACAACCTTCGTCTCCAATTTCCGACACGACGAACCACTAGACGTCCTAACGATGGCCTCTCCGTTTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCCGACGGCAAGGTCGTCCCTGTCACGGTGGTCGGTTTCAAGGAAGGAAACATCGTTACCCAGCTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTCGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTGGGGCATCTCCAGAAAGCTGGAGCGATTCCAATGCGCCATTTGCAGGAGTTTCGTCTTGAGTCTACTGATGGATTTGAGCCCAATCAGCGCCTGGTTTTCAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACAATTGGAAAGGGATTTCAAGGTTTTTGTGTTTCTTGCTTATTCTGTTTGAAGTCTGTTTATTTCATTAGCTGCAAAATTGCCTTGGGTTTCTGTTTTCCTTGGAGCTTATGGTTTTTGTTCTGTGCCTGCACAGTGTTGGAGTTGAATCTAGGCATGCTCATGAAGGATTAAACATGAAATTTCATTGATATTTTTGCTGTTTGAATTCAGAATGACATATATAATTCCAAAGCCTGAGCCAGTCTTCTTGTTTTTGTTCTGTGCCTCCATAATGTTGGAGTTGAATTTAGGCATGCTCAGGAAGGATTAAACATGAATTTTCATTGATATATTTGCTGTTTGAATACACAATGACATACTATTCTCAAGCCTGAACCAGTCTTCCATGAAAGAGAAGCTGTTTAGAATTTCTAATCCCAAGTATTGAATGTCAGGATATGATAGTTTTATGTCTGCAAATATTTTGCTAGTTTTGTGTGTGGATAAGGATGTGGCTGTGCTATCTTGGCAAGCTGTCATTCCAAAACACATCCATTGTCATCCCTTGTCATAGTAGACTCCATAAGATTGTGCTTACATCTGGTACTATTAAATCACCATTAGACATGAGAGCTTAAGTTGAAACTTTATGGTAGGTTTTTATAATTTAATATGTTCTCAACACCCCTTATGTGTAAACTTAGATATTAATCTGATTTACAAGACCCAACATGTGGACTATTAATGTAAAGCTAGAAGAAAACTAATACATACATAAAAAATTTTAGGCTAAATTACAAAAGAATACTTCTAAACGTTGTCCATTGTTTCAATAATATTCTTATTCTTTCAAAAGTTGCAATATTACCCAACGTTTCAAAAGTACTCTTAGAGTAAAATTCTTTAGAATTTTGGACAAATAATGACATAGATCATTGTGGCAGTTACCTAATGGTGTGACGATCCAAATTTATGTTCCAAGTCATTGCCACACTGTTCCAGGTCTCAAATCTTTGAAATTCATTTCTACTTCTAGGGTAGTTTTGAAATGCTTACAAAAAATCAAAGATAATATTGTAACTTTTGAAAGAATAAGAGTATATTTGTAACAAATGACAAAGTTTAGGATATTCTTTATAATTTAATCTAAATTTTAACCATTTATGTGTTCTCCACCTCCTTTCAACACTACTCTCTAACTGGTTTCTTGTAACATTCTCCCTCTAATTCTTCTCTAGGTGGAATTAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCATGGTTCAAAGAGTCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCAGGGCGTGTTTACAAGGGGAAGAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAGGATTGTAAAGATTGACGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGTATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAG

mRNA sequence

ATGTCTATCATATCATTTTCAACAGCTTCAACCTCAACCAGACATTCAATTTTCACTAACAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTCCTCCACTTCTTCATCTCTGACACTCGGAACTTCTTTCCTCGCCCTTCCTCTGAAATCCCGCCACAACAACAACCTTCGTCTCCAATTTCCGACACGACGAACCACTAGACGTCCTAACGATGGCCTCTCCGTTTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCCGACGGCAAGGTCGTCCCTGTCACGGTGGTCGGTTTCAAGGAAGGAAACATCGTTACCCAGCTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTCGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTGGGGCATCTCCAGAAAGCTGGAGCGATTCCAATGCGCCATTTGCAGGAGTTTCGTCTTGAGTCTACTGATGGATTTGAGCCCAATCAGCGCCTGGTTTTCAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACAATTGGAAAGGGATTTCAAGGTGGAATTAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCATGGTTCAAAGAGTCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCAGGGCGTGTTTACAAGGGGAAGAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAGGATTGTAAAGATTGACGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGTATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAG

Coding sequence (CDS)

ATGTCTATCATATCATTTTCAACAGCTTCAACCTCAACCAGACATTCAATTTTCACTAACAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTCCTCCACTTCTTCATCTCTGACACTCGGAACTTCTTTCCTCGCCCTTCCTCTGAAATCCCGCCACAACAACAACCTTCGTCTCCAATTTCCGACACGACGAACCACTAGACGTCCTAACGATGGCCTCTCCGTTTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCCGACGGCAAGGTCGTCCCTGTCACGGTGGTCGGTTTCAAGGAAGGAAACATCGTTACCCAGCTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTCGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTGGGGCATCTCCAGAAAGCTGGAGCGATTCCAATGCGCCATTTGCAGGAGTTTCGTCTTGAGTCTACTGATGGATTTGAGCCCAATCAGCGCCTGGTTTTCAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACAATTGGAAAGGGATTTCAAGGTGGAATTAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCATGGTTCAAAGAGTCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCAGGGCGTGTTTACAAGGGGAAGAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAGGATTGTAAAGATTGACGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGTATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAG

Protein sequence

MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLRLQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN

Homology

[Close]

BLAST of HG10010835 vs. NCBI nr
Match: XP_008460096.1 (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo])

HSP 1 Score: 525.4 bits (1352), Expect = 3.2e-145
Identity = 276/301 (91.69%), Postives = 284/301 (94.35%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MSIISFS+AS ST+H IFTNN SSSSSS        SSSLTL TSFLALPLKS H NNLR
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSS--------SSSLTLRTSFLALPLKSHHKNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
             FPTRRTTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FHFPTRRTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPELGHL+KAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 293

Query: 301 N 302
           N
Sbjct: 301 N 293

[Close]

BLAST of HG10010835 vs. NCBI nr
Match: XP_038876222.1 (50S ribosomal protein L3, chloroplastic [Benincasa hispida])

HSP 1 Score: 524.2 bits (1349), Expect = 7.2e-145
Identity = 277/301 (92.03%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MSIISFS+ASTS RH IF NNA     SSSSSFSSTSSSLTL TSFLALP+   H NNLR
Sbjct: 1   MSIISFSSASTSARHPIFANNA-----SSSSSFSSTSSSLTLRTSFLALPMNPHHKNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
           LQFPTRRTTRRPN+ LSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  LQFPTRRTTRRPNNALSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLES  GFE NQ 
Sbjct: 121 QVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESVGGFESNQS 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 296

Query: 301 N 302
           N
Sbjct: 301 N 296

[Close]

BLAST of HG10010835 vs. NCBI nr
Match: KAG6574805.1 (50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013387.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 522.7 bits (1345), Expect = 2.1e-144
Identity = 275/301 (91.36%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MS+IS S+ASTS RH IFTNNASS         SS SSSL L TSFLALPLKS  NNNLR
Sbjct: 1   MSVISISSASTSNRHPIFTNNASS---------SSPSSSLKLRTSFLALPLKSHRNNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
            QFP  RTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPE+GHLQKAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 292

Query: 301 N 302
           N
Sbjct: 301 N 292

[Close]

BLAST of HG10010835 vs. NCBI nr
Match: KAA0039986.1 (50S ribosomal protein L3 [Cucumis melo var. makuwa])

HSP 1 Score: 522.3 bits (1344), Expect = 2.7e-144
Identity = 275/301 (91.36%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MSIISFS+AS ST+H IFTNN SSSSSS        SSSLTL TSFLALPLKS H NNLR
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSS--------SSSLTLRTSFLALPLKSHHKNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
             F TRRTTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FHFATRRTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPELGHL+KAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 293

Query: 301 N 302
           N
Sbjct: 301 N 293

[Close]

BLAST of HG10010835 vs. NCBI nr
Match: XP_022959488.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 521.9 bits (1343), Expect = 3.6e-144
Identity = 275/301 (91.36%), Postives = 279/301 (92.69%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MS+IS S ASTS RH IFTNNASS         SS SSSL L TSFLALPLKS  NNNLR
Sbjct: 1   MSVISISLASTSNRHPIFTNNASS---------SSPSSSLKLRTSFLALPLKSHRNNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
            QFP  RTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPE+GHLQKAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 292

Query: 301 N 302
           N
Sbjct: 301 N 292

[Close]

BLAST of HG10010835 vs. ExPASy Swiss-Prot
Match: O80360 (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL3 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 6.6e-109
Identity = 204/266 (76.69%), Postives = 227/266 (85.34%), Query Frame = 0


Query: 37  SSSLTLGTSFL-ALPLKSRHNNNLRLQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGM 96
           ++ LTL + FL  LPL++           T + T       S+  S+EAG+GVMATKLGM
Sbjct: 3   TTPLTLRSPFLHRLPLRA---------LKTHKPTSLHISKSSISASLEAGVGVMATKLGM 62

Query: 97  MSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQK 156
           MSFFE  G VVPVTVVGF+EGNIVTQ+KTEATDGY+AVQVGYRRVRDRKLTKPE+GHL+K
Sbjct: 63  MSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEK 122

Query: 157 AGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 216
           +G IP+RHLQEFRL+S DGFE  Q+L F ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR
Sbjct: 123 SGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 182

Query: 217 GPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIK 276
           G MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKL+IVKIDD LN++MIK
Sbjct: 183 GQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIK 242

Query: 277 GAVPGKPGNLLRIAPAKIVGKNIPKN 302
           GA+PGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 243 GALPGKPGNLLRIAPAKIVGKNIPKS 259

[Close]

BLAST of HG10010835 vs. ExPASy Swiss-Prot
Match: Q9SKX4 (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.8e-106
Identity = 199/270 (73.70%), Postives = 223/270 (82.59%), Query Frame = 0


Query: 32  SFSSTSSSLTLGTSFLALPLKSRHNNNLRLQFPTRRTTRRPNDGLSVCMSMEAGIGVMAT 91
           SF S  +  TL +S          +++L ++         P     V  SMEAGIGVM +
Sbjct: 9   SFPSLLNKTTLSSSLFTPTFLPAKSSSLLIK-------SSPKTRFVVSSSMEAGIGVMGS 68

Query: 92  KLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELG 151
           KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GYRRVRD+KLTKPE G
Sbjct: 69  KLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETG 128

Query: 152 HLQKAGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRH 211
           HLQKAG IPMRHLQEFRL + +GFEPNQ+LVF+E+FKEGDLVDV+GTTIGKGFQGGIKRH
Sbjct: 129 HLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRH 188

Query: 212 NFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIVKIDDDLNV 271
           +FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KIRKL+IVK+D +LNV
Sbjct: 189 HFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNV 248

Query: 272 VMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 302
           VMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 249 VMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of HG10010835 vs. ExPASy Swiss-Prot
Match: P82191 (50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=1 SV=2)

HSP 1 Score: 380.9 bits (977), Expect = 1.3e-104
Identity = 216/304 (71.05%), Postives = 244/304 (80.26%), Query Frame = 0


Query: 2   SIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLRL 61
           SI S S   +S++ S+ +  A S SSS +   +    SL L TSF+  P     N  ++L
Sbjct: 9   SIKSSSCTYSSSKRSLSSPKAVSLSSSVNG--TPKVQSLRLSTSFVCSP-----NQIIKL 68

Query: 62  Q--FPTRRT-TRRPNDGLSV-CMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGN 121
           +   P+R T  RR   GL +  MS++AGIGVM TKLGMMSFFE DG VVPVTV+GFKEGN
Sbjct: 69  KSVSPSRSTQLRRAVGGLEIKMMSVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGN 128

Query: 122 IVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEP 181
           IVTQ+KTE+TDGY+AVQVGY R+RDRKLT PE GHL KAG IPMRHLQEFRL S D F P
Sbjct: 129 IVTQVKTESTDGYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTP 188

Query: 182 NQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTP 241
           +Q+L+F ELFKEGD+VD+SGTTIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTP
Sbjct: 189 SQKLLFEELFKEGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTP 248

Query: 242 GRVYKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKN 301
           G VYKGKKMPGRMGGTK KIRKL+I+KID DL VVMIKGAVPGKPGNLLR+APAKIVGKN
Sbjct: 249 GHVYKGKKMPGRMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKN 305

[Close]

BLAST of HG10010835 vs. ExPASy Swiss-Prot
Match: B1XJT9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplC PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.8e-64
Identity = 123/213 (57.75%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 86  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGN-IVTQLKTEATDGYSAVQVGYRRVRDR 145
           +G++ TKLGM   F+ + G  +PVTVV  + G   VTQ+KT  TDGY++VQ+GY  V+++
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVV--QAGPCTVTQIKTSETDGYTSVQIGYGDVKEK 62

Query: 146 KLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKG 205
            LTKP+LGHL+KA A P+RHL+E+RL+   G+E  Q +  N +F+ G +VDVSG TIG+G
Sbjct: 63  NLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRG 122

Query: 206 FQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIV 265
           F G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL +V
Sbjct: 123 FAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVV 182

Query: 266 KIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGK 297
           ++D++ N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 RVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]

BLAST of HG10010835 vs. ExPASy Swiss-Prot
Match: B0C1D3 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplC PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.0e-64
Identity = 121/213 (56.81%), Postives = 161/213 (75.59%), Query Frame = 0


Query: 86  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQLKTEATDGYSAVQVGYRRVRDRK 145
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQ+KT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 146 LTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGF 205
           LT+PELGHL+K+G+ P+RHLQE+RL     +E  Q  +  +LF EG LVD+SGT+IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 206 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIVK 265
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 266 IDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKN 298
           +D + NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]

BLAST of HG10010835 vs. ExPASy TrEMBL
Match: A0A1S3CBR5 (50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.6e-145
Identity = 276/301 (91.69%), Postives = 284/301 (94.35%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MSIISFS+AS ST+H IFTNN SSSSSS        SSSLTL TSFLALPLKS H NNLR
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSS--------SSSLTLRTSFLALPLKSHHKNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
             FPTRRTTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FHFPTRRTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPELGHL+KAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 293

Query: 301 N 302
           N
Sbjct: 301 N 293

[Close]

BLAST of HG10010835 vs. ExPASy TrEMBL
Match: A0A5A7TD05 (50S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002680 PE=3 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 1.3e-144
Identity = 275/301 (91.36%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MSIISFS+AS ST+H IFTNN SSSSSS        SSSLTL TSFLALPLKS H NNLR
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSS--------SSSLTLRTSFLALPLKSHHKNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
             F TRRTTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FHFATRRTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPELGHL+KAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 293

Query: 301 N 302
           N
Sbjct: 301 N 293

[Close]

BLAST of HG10010835 vs. ExPASy TrEMBL
Match: A0A6J1H630 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460446 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.7e-144
Identity = 275/301 (91.36%), Postives = 279/301 (92.69%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MS+IS S ASTS RH IFTNNASS         SS SSSL L TSFLALPLKS  NNNLR
Sbjct: 1   MSVISISLASTSNRHPIFTNNASS---------SSPSSSLKLRTSFLALPLKSHRNNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
            QFP  RTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPE+GHLQKAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 292

Query: 301 N 302
           N
Sbjct: 301 N 292

[Close]

BLAST of HG10010835 vs. ExPASy TrEMBL
Match: A0A6J1KXN5 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499138 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.0e-144
Identity = 274/301 (91.03%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MS+IS S+ASTS RH IFTNNASS         SS SSSL L TSFLALPLKS  NNN+R
Sbjct: 1   MSVISISSASTSKRHPIFTNNASS---------SSPSSSLKLRTSFLALPLKSHRNNNVR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
            QFP  RTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KTEATDGYSAVQVGYRRVRDRKLTKPE+GHLQKAGAIPMRHLQEFRLES DGFEPNQR
Sbjct: 121 QIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 292

Query: 301 N 302
           N
Sbjct: 301 N 292

[Close]

BLAST of HG10010835 vs. ExPASy TrEMBL
Match: A0A0A0K9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078530 PE=3 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.6e-142
Identity = 271/301 (90.03%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 1   MSIISFSTASTSTRHSIFTNNASSSSSSSSSSFSSTSSSLTLGTSFLALPLKSRHNNNLR 60
           MSIISFS+AS ST+H IFTNN SSSSSSS       SSSLTL TSFLALPLKS + NNLR
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSS-------SSSLTLRTSFLALPLKSHNKNNLR 60

Query: 61  LQFPTRRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120
             FPTR TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT
Sbjct: 61  FHFPTRPTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVT 120

Query: 121 QLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQR 180
           Q+KT+ATDGYSAVQVGYRRVRDRKLTKPELGHL+KAGAIPMRHLQEFRLES D FEPNQR
Sbjct: 121 QVKTDATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQR 180

Query: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRV 240
           LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRV
Sbjct: 181 LVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRV 240

Query: 241 YKGKKMPGRMGGTKRKIRKLRIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPK 300
           YKGKKMPGRMGGTKRKIRKL+IVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK
Sbjct: 241 YKGKKMPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPK 294

Query: 301 N 302
           +
Sbjct: 301 S 294

[Close]

BLAST of HG10010835 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 385.2 bits (988), Expect = 4.9e-107
Identity = 199/270 (73.70%), Postives = 223/270 (82.59%), Query Frame = 0


Query: 32  SFSSTSSSLTLGTSFLALPLKSRHNNNLRLQFPTRRTTRRPNDGLSVCMSMEAGIGVMAT 91
           SF S  +  TL +S          +++L ++         P     V  SMEAGIGVM +
Sbjct: 9   SFPSLLNKTTLSSSLFTPTFLPAKSSSLLIK-------SSPKTRFVVSSSMEAGIGVMGS 68

Query: 92  KLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELG 151
           KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GYRRVRD+KLTKPE G
Sbjct: 69  KLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETG 128

Query: 152 HLQKAGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRH 211
           HLQKAG IPMRHLQEFRL + +GFEPNQ+LVF+E+FKEGDLVDV+GTTIGKGFQGGIKRH
Sbjct: 129 HLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRH 188

Query: 212 NFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIVKIDDDLNV 271
           +FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KIRKL+IVK+D +LNV
Sbjct: 189 HFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNV 248

Query: 272 VMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 302
           VMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 249 VMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of HG10010835 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-33
Identity = 80/206 (38.83%), Postives = 124/206 (60.19%), Query Frame = 0


Query: 87  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLT 146
           G++A K GM + ++  GK +P++++ + + NIV+Q+KT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 147 KPELGHLQKAGAIPMRHLQEFRLESTDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQG 206
           K  +GH +  G    R L+EF + + D   P    +    F  G  VDV+G T GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFPV-TEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 207 GIKRHNFKRGPMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLRIVKI 266
            +KRH F   P +HG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + KI
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 267 DDDLNVVMIKGAVPGKPGNLLRIAPA 292
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

The following BLAST results are available for this feature:

BLAST of HG10010835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460096.1	3.2e-145	91.69	PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo]	[more]
XP_038876222.1	7.2e-145	92.03	50S ribosomal protein L3, chloroplastic [Benincasa hispida]	[more]
KAG6574805.1	2.1e-144	91.36	50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
KAA0039986.1	2.7e-144	91.36	50S ribosomal protein L3 [Cucumis melo var. makuwa]	[more]
XP_022959488.1	3.6e-144	91.36	50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of HG10010835 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80360	6.6e-109	76.69	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
Q9SKX4	6.8e-106	73.70	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
P82191	1.3e-104	71.05	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=...	[more]
B1XJT9	3.8e-64	57.75	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]
B0C1D3	5.0e-64	56.81	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]

BLAST of HG10010835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBR5	1.6e-145	91.69	50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 ...	[more]
A0A5A7TD05	1.3e-144	91.36	50S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1H630	1.7e-144	91.36	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KXN5	3.0e-144	91.03	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0K9U5	3.6e-142	90.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078530 PE=3 SV=1	[more]

BLAST of HG10010835 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43030.1	4.9e-107	73.70	Ribosomal protein L3 family protein	[more]
AT3G17465.1	1.6e-33	38.83	ribosomal protein L3 plastid	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 213..293 e-value: 1.3E-20 score: 75.6
None	No IPR available	GENE3D	3.30.160.810		coord: 118..178 e-value: 3.3E-20 score: 74.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..253
None	No IPR available	PANTHER	PTHR11229:SF16	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 80..300
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 87..288 e-value: 9.6E-74 score: 245.5
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 80..300
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 85..292 score: 35.659286
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 180..267 e-value: 2.0E-17 score: 63.3
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 187..210
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 85..297

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010835.1	HG10010835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome