HG10010793 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010793
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L38
LocationChr06: 25963983 .. 25972570 (+)
RNA-Seq ExpressionHG10010793
SyntenyHG10010793
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCCAAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTCACTTTTTTCATAACTAACATTGCGATGGTATATTGGAAGTGGCTATAACGATAGGTTGGTAATGTGTTTATCAATGGTTAGATAGATTACAAATTGTTTCATAATTTGTTTGTGACGACTATAAATTTCCAAGGAAGACGCTAAAAACACTCATGTGTGCTTTTATCATCTGTTTTTGGCTTAAATGAACGTTAAATCTCCTAAAACACAGCTTCTCTTTTATTAACCTCCCTATAAGTACAAATAGAATCTCTCCCACAAATCTACCGCATGTGATTTTTTTCTCTTCAAGTTCATATTTGCTTCTTGCTTCCTTGCATCGGTCTCTTTACAAAATATTGTGTATTTCTTTAGCACTGCCCGCATCGCTATCTTCTTTAACTATAAGGATAAATTGCTTACAATGAATCCCCTTGTAGATACTTCGGCAGGTCTGTTTTTCCCCCTTCTTTGGGGAATTTGAATTGAATCTTGAGAGGAATTTTAGACTTTTTAGGGGGTTGAGAGATCTGGGTAGGTTATTAGCATCTTGAGGCTTCAGTCGTCAAGCTTGGCTTCTTTTGTTTGGATTGGTGTTCATTCTAGTAGGTGTTCGGATTCCTTTTCTTGAACTTCCGGTGTATTCTTTCACTATCTTTGAAAGCGGGGTTTCTTATTATAATAGCAGTTTGGTCTTGTATTTTAAGACTTACACTTTACTTTTGTCTTAATTTAGTCCTCACACTTTCAATAAATTTTTAAGTTTTAGTCTATGTTAGTTTATGGTCAACTTTTTTCAAAAAGTATAATTAGATCTCTACTATCCTTCATACCATCAAATTTGTGGGAAAAATTTGGCATTCATTTTTATCAAATAGAAATTAGTGAAAAATACACTTTTTGTCCCTAAGGTTTGAACATTGTGCCTATTTGGTCCCGAACACTTTCGTCCTTGAAGTTTGAAAAATAGTTCTGAATGGTCTCTAAGCACATTTTGACTATTAGGTGGGACTTGAATAAGTGATTGTATCTTGTTGACTTGGAGGCTTTATTAATTTAATATTCAATTTAGGATTATGTGGTCTCTCATCTCTAACTATTGTGCCGACCACCATTGTCTTCGCCGATTTCCTACACTCACCTCCCGCAACTGCTGCCTCACTCATCACTTTCCTCTTTTGCTGTTCAATATTGACTGCCCTTGCCCATATTTTTCTTTTAGTTTTGAAGTTTAATTCTCTTCTCTTTAGATAACAAAAACACCAAAAAAGAAAAATGAGAGAAACCCAACTCAACATATAAGCAAAAACCCCCTATCCCACGTTTTTGCTTCCCCTGTTCATTTTGATTGTGTGTTATGAAAATTTTATACTCTAGTTTTTGGTATGTATATATGCATTATGAAATTATTGCAAAAACTTTACTTAGGAGTATAAATATAAAAAATTGAAGTTATATAAATGCATTTTAGTCTACTCATTTTCAAACCATCTTCTTCCATGATTTCCACACTGGTCTCCATGAGAGGCATTGCGGCAAGAAGAGGAAAAAAAATATAGGCCACACATAACCCTAATTTTTCATATTAATTAATAAAATTTTCCAGTAAAAAAGAGACAATCACTCACTTAAGCACCACATCATCTTACCCAAGAAATTACTGTAATTATTTTACAAGGTTCGATATTAATAAAATTAGCCTCAAACTAACATAAAATGACTAATTTTGAAATTTATGAAAGAATGCTGACTAAAATTAGATATTTGAGAGTTCTAAGACCAAATTTGTATGATTACATGATGAAAATGGTATTTTAACTTCAAACATAATTGGTGCCTATGATGTTCTGCTAAGATGAGGAGGAATTTGGTGTGAACATTGACTGACATTTATTTTTCCACGTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTTTTTTATGAGGTTTTTTTCCCCAACTATTTAGAATATATTTAAATTGGATTTGAGCTTGTAGTAATCCATATTTACCTTCGTTTTCCAGTGGATTGGTTGAAATTTAGAATGGTTACGATGAGTTTATGGTGTGGGTTCATGTTTCATTAAATTTATCACTACTCCCGCAGTGTTTCTAACTCAAGGTGGATTTGATAAGCACAGCCTTTTTGATATGGGGCAGTAAACAGTTTAGTTTCTTTTTATTTTTATTTTTATTTTTTTGTCATTTAGTTTGAAATTCCAACATGTGGGATGGTGAGATTCCTATCTTTGATCTCTTGGTTCTAGATATATGTTTTAATTATTTGAGTATAATTTTAACTATGCTCAAGTTGGCTATCGAATTAGGCAGGTGTTCAATGTAATGTTTGAAATTTACTGCCAAATTTGAACGTGATCAGGATTGTTGTAAAATTATTTGCCTTGGTTGACTCAGAATTGAGGGAAGGTTGAAAACAATTGAAAGTCAATTCTACAGCCATTGGATGTGTAGACGATCATAACAAATGAACATGGAAGATTGTCTGATCATTCCTTTTTATTCTTATTTGAAGGATAAATGTATTACAGAGAGAGAATTAAATATAGGTATGGTCCTAGGACGCCTTGTTTCAAAAACTTTAAGCCCCAAAAAGCTCTTTTGCACCTCACTTGAGAGACTATAAAAACATGTTATGGGAAGGCAAAACATAAGTTAAATGCCTTCTTGCAACGTAAGTTTGACACTTATTTAATCGATTAAAACAATCGAAAGCATTGTCAACATTTAGTCGTCCATTTCTAAAAATGTAGAAATAGGGTTATTCGTAAGTGGCCGTGTGACCATAGTTGTATTTTAGGAAAAAAAAACTTTTTTTTCTTTAGATTTTGGGAGTTTCATTTGTACTTTTTAAAATGTTATTTTTTTTCCATTTAAGGCTTGCTTTAAGTTAATTTATTTCACAATGTAACAATTTTATTCTCAGATTTGAGTTTTGTTTCAATCTATATTAATATTTGTAATCTTGATTTTTCATGATACTCAATTTTAATTTTTGGTGTTAATGTCTTAAAATTAATGTAAGATAATTATGAATTGAAAATTTTAAATTATTTTTAATAAACATGTAAAACTTAATTAATTACAATTCTTTAAATTTTTTTAAATTAATTAATATACATTAATACTCAAGATTAAAAGTATACATTTTTTTAATTTAAGGACTAAATTGAAACAACATTCAAATTTCATTGGTAAAATTGTAATATTTTGAAATTCAAATAATCACTAATTATCCAGAAAAAAATATTAGAGTTCATCCAGATAAATGGACAAAACATTATCAAGCAAATCGAAATCTAAAAATTAGTTTGCCATTTTTCATTATTTATTATTTAATTATTATTTTTAATTAAATTTTCGTGTTTCTATTCAATAATCAATAAATAGGTAGATGGACCTTCTTGGATTGGGCTTATTTCAATTGACGGCCCGTTGGGTTTTGGACCGAGAAACTCAGCAACCCTCCGCATAAATAAGAAGTTCTAAACCTAGGGTTGTGTCTTCACGCTCGGCCGCCTCAGTTCTCCCACCAAAATGGTACCTCTCAAATTTCCGCTTTTGATTTCTTATGCTTCACTTGTTATCTGCCATGATTTAGCTTCTGTTCTATCTTGTTCAATGCTATGAGGGTCCATATCCTTATTAGATTACAACTCCATATGTTCTATTCACGCTGAAATTTGAGGCGTTCTTGAGTTTTTTTTTTTTTTTTTTCTGGTTAAGGTCTATGGATTAAAGTAACTGTTTGATATGTGGATTTTCTTCTTCAAATTCTGTCACTGTTGTGTACATGTCTCCTTCTCGTTTGCATATCTTGTGATTTCTTTGTCTTTTTGTTCCATATTTCAATATACAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTGCTTTCTTAAGAACCAGCACTGCAATGTTGAGTATTCCTGATATATTAGAAGTGGCAATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACAAGTGTTTCATAATTTGTTTGTGACAACTATAAATTTCCAAGGAAGAGGCTAAAACACTCATGTGTGCTTTTATCGTCAGCTTTTGGCTTGAATGATCCTTAAATCTCCTAAAACATGCCTCTTCTTTTGACTAACTTTCCTATAAGTGCAAATAGAGACTCTCCCACAAATCGCCCGCTTGTGATTTCTTTCTCTACAAGTTTGTGTTTGCTTTTTGCTTCCTTATATCGGTCTCTGTACAAAATTTTGTGTATTTCTTTAGCTCTGCCCACATCTCTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAAATCCTTCGGCAGGCTTGTGTTTTCGCCTTCTTTGGGGAATTTTACTTGACTCTTGAGGAATTTTAGATTTTTTGGGGGTTGAGGGATCTGGGTAAGTTATTAGCATCTTGGGGCTTCCTTCGTCAAGTTAGGCTTCATTTCTTGGAACTTGTTAGTGTTCGGATTCCTTTTCTTGAACTCACGGTGTATTCTTTCACTATCTATGAAAGCATGGTTTTCTATTAAAATACCCTTTTGGTCTTGTATTTTAGGATTTACATTTTAGTTGTCTTATTTTAGTCCTTGCACTCAATAAATTTTTAAGTTTTCGGCTATTTTAGTTTATGGCCCACTTTTTCAAAAAGTATAATAAGATCGTCTCTACTATCCTTGATCCCATCAATTCTGGGGGAAAATTTTACTTTCACTTTTCTCAAATAGAAATTATTATAATTATTTTATAAGGTTCTATATTAAAAAATAATAACCTCAAACTAACCTAAAATGACTATTTTGTATTATGAAAGAACATGTATTAAAATTTGTCATTGGAGAGTTTTGTGACTAAATTTGAATGAATCCCAAATTACAGAGATGAAAATGGTGTTTTAACTTCAAACAAAATTGGTTCCTATGATGTTTTGCTAAGATGAGGATGAATTTTGTCTGAATATTGATTGACCTTTATTTTTCCACTTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTGTATGGTGTTTTCTTTCCCAACTATTTAGAATACATTTAAATTGGATTTGAGCTTGTAGTAATCCATATTTATCTTCGTTTTCCAGTGGATTGGTTGAAATTTTGAATTGTTATGGTGAGTTTATCATGTGAGTTGATGTTTCATTAAATTCACGGCAGTGTTTCTAACCAAAGGTGGATTTGATAAGCACAACCTTTTTCATAAAGGGCAGTAAACAGTTTGTTTTTGAACAATACCATGCTGATCCTTTTATTTTATTTATTTATTTTTTTTTTTTGCCATTTCGATTTGTATTCTAATACATGTTTTAATTATCTTAACTATGCTCATCTTGGCTATCAAATCATGGTGAATGTAATGTTTGAAATTCGCCACCAAATTTGACGCCCATGCATTATTTGAACATGATTAGGATTTTTGTGAAATTATTTGTCTTGCATAACTCAGAATTAAGGAAGGTTGAAAACAATTGAAACTCAATTCAACAGCCATTGGATGTCATCATAACAAATGAAGCAATTACAGAAGATTGTCTGATTGTTCCTTTTTTTTTTTTATCAATTGTAGGATAGATATATTAAAACGTAGAGAATTAAAAATATTTAAGCTTCTACTCTGGAACACCTTGTTCATAAAACTTTCAGCACTAAAAAGCTCTTTTGATACTTCACTCGGGAGAGAGACTACAAAAACACAAGTTGAACTAAGGTGAGGGATTTTAATCTCAAATCATCTAGTTAAGCGTACACATTCTATGTCAATGACTCAAGCAATTTTAGTTGGATTACTTTTTGAAAATTTTCTTATGAAACATGTGAATGAAGATAAAACGTGTTTAACACGGTAGGTAGGTGACTAAATCATAGAGGATACAAGAGAATGTAGGAGTCACTAGTGTTAAATATGGGTCTAGAGCGGTATAACAATACTCTTTCAATCTCAACGCACTATGTTTTTAAGTGGTGTAAGACTATCTGTTGGCATCTAAATAAATATTGTATTGTACCTCTAAATTCTAATATAACACCCACCCAAAGAAGAGAAAGGGGCCTAAAAAAACTCCTTTTGCCTCCTTTGGATTAGGGTAATTTAAAAAAATATATATTAGCAAAGAAATAGGCAAGGTTGGAAACTATTTGTACAAATAAGCCATTTGTCTTGTCTTTATTCAATGGTTTTTATCTTTTTTTTTTTTTTAATGAACATTTTTAATCTCTAAGTTTTGAGAAATAAATTTAAATAGTGTTTTGAGATTAATTTTACCCTCTGATAACCAAATTTTTATTATTTGAGTTTAAAAGGTAATAAATAATAAAATTAACAATAAAAACAAAAACAATTATCATCCAAATGGCTTCTGTGAGCTATTTGCAGTAGAAGGAAAAATGGAGGAAGAGGAGGAAGACCACGAGAGAAAAACTAGAGAAAATGAAGCTTTTTTTTTTTTTTTTTGAGGAAAAGGAAGGAGGTGATGAGAGAGAAGAGTATTTGTCTTTATTATTATATTACCTTTTTAAATTTTCTATGTCCGCATTAAAAAATAAAATAAAATTAGTTACTTACGGTTGTAAACAGTAAAATTAACTCCAACTCTAATGACCATTTAAACATATTTCTCAAAACTTAGGAACCTCTGTGTAGGATATGACCACGGCCACCGTTAAGTTATCTCTCCACTATCAACTCAACCACGTACGACCTTGAGCCTATCACTACCACAACCTTGACCATAATTGTATTTTAGGAAAAAAAAACACCTTTTTCTTTAAATTTTGGGAGTTTTCATTTGTACTTTTTAAAATGTTATTTCTTTTTCCATTTAAGGTTTGTTTTAATTTAATTTGTTTCAAAATGTTACAATTTTATCTTCGAGATTTGCATTTTGTTTCAATTTGATTTATGTTTAACATTTGTAATCTTCATTTTTCATAATACTCAATTTTAATTTTTGGTGTTAGTGTCTATTAATTAATTTAAGATAATTATAAATTAAAATTTTTAAATTATTTTTAATAAACATGTAAAACTTAATTAATTACAATTCTTTTAAATTAATATACATTAACACTCCAGATGAAAAGTTAATATTTGGTGAAAAATCAAAATTAAAAGTGTAAAAATTTTAAATTCAAAGACCAAATTGAAACAAAACTCAATTTTCATCGGTAAAATTGTAATATTTTGAAATTCAAATAATCACTAATTATTCAGAAAAAATATTAGAGTTCATGCAGATAAATGGACAAAACATCATCAACCAAATCGAAATATAAAAATTAGTTTGCCATTTTTCATTATTGATTATTTATTTTTTAATTATTATTTTTAATTAAATTTTCGTGTTTCTATTCAATAATCAATAAATAGGTAAATGGGCCTTCTTGGATTGGGCTTATCTCAATTGACGGCCCGTTAGGTTTTGGACCGGAAACTCAGCAAACCTCCACATAAATAAGAACTAAAACCTAGGGTTTTGAATCAGGAACTACGCTCGGCATCCTCCATTCTGTCACCAAAATGGTACCTCTCAAATTATAATTCCTAATTTCATTGCTTTTCTATTGTTCATGTTCTTAATACATTCATGATTCAATCCGCTATTGGTTTCTTATGCTTGCTGTCGACAACTATGATTTAGCTTCGGTTCTATCTTGTTCAATGCAATGTTATGAGGGTGCATATCCTCATTAGGTTATAACTCCATATGTTCTATTCACGCTGAAATTTGAGGCGTTCTTGAGTTTTTTTTTTTTTTTTTTTTTTTCTGGTTAAGGTCTATGGATTAAAGTAACTGTTTGATATGTGGATTTTCTTCTTCAAATTCTGTCACTGTTGTGTACATGTCTCCTTCTCGTTTGCATATCTTGTGATTTCTTTGTCTTTTTGTTCCATATTTCAATATGCAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

mRNA sequence

ATGCAGCCAAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTCTATGGATTAAACCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGAACTACGCTCGGCATCCTCCATTCTGTCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Coding sequence (CDS)

ATGCAGCCAAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTCTATGGATTAAACCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGAACTACGCTCGGCATCCTCCATTCTGTCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Protein sequence

MQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLWIKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTTLGILHSVTKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Homology
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BLAST of HG10010793 vs. NCBI nr
Match: KAE8646721.1 (hypothetical protein Csa_005163 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 9.8e-61
Identity = 129/143 (90.21%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 69  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 128
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61

Query: 129 PGTTL--------GILHSVTKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS 188
           P   L        G L S TKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
Sbjct: 62  PVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS 121

Query: 189 KYLYTLCVFDSEKADKLKQSLPP 204
           KYLYTLCVFDSEKADKLKQSLPP
Sbjct: 122 KYLYTLCVFDSEKADKLKQSLPP 144

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BLAST of HG10010793 vs. NCBI nr
Match: KAE8658400.1 (60S ribosomal protein L38 [Hibiscus syriacus])

HSP 1 Score: 235.0 bits (598), Expect = 5.9e-58
Identity = 144/251 (57.37%), Postives = 154/251 (61.35%), Query Frame = 0 

Query: 3    PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
            PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLP
Sbjct: 1247 PKQIHEIKDFLLTARRKDARLVKIKKSRDVVKFKVRCSKYLYTLCMSDAKKADKLKQSLP 1306

Query: 63   PG------------------LWIKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR 122
            PG                   +  PKQIHEIKDFLLTARRKDARSVKIK+S+DVVKFK  
Sbjct: 1307 PGKLLCINRVASFFVLNEPACYRIPKQIHEIKDFLLTARRKDARSVKIKKSRDVVKFK-- 1366

Query: 123  CSKYLYTLCVFDSEKADKLKQSLPPGTTLGILHSVTKMPKQIHEIKDFLLTARR------ 182
                                                  PKQIHEIKDFLLTARR      
Sbjct: 1367 --------------------------------------PKQIHEIKDFLLTARRKDARSV 1426

Query: 183  -------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEK 205
                                     KDARSVKIK+S+DVVKFKVRCSKYLYTL V D EK
Sbjct: 1427 KIKKSMCHPSAFMVMISELPSHCQKKDARSVKIKKSRDVVKFKVRCSKYLYTLYVSDVEK 1457

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BLAST of HG10010793 vs. NCBI nr
Match: KAF3497693.1 (hypothetical protein DY000_02056630 [Brassica cretica])

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-57
Identity = 121/145 (83.45%), Postives = 127/145 (87.59%), Query Frame = 0 

Query: 67  IKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 126
           + PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQS
Sbjct: 9   LTPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQS 68

Query: 127 LPP--GTTLGILHSVTKM-----PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC 186
           LPP   TT G    V  +     PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRC
Sbjct: 69  LPPVVATTSGAARMVLSLLIVLTPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRC 128

Query: 187 SKYLYTLCVFDSEKADKLKQSLPPG 205
           S+YLYTLCVFD EKADKLKQSLPPG
Sbjct: 129 SRYLYTLCVFDQEKADKLKQSLPPG 153

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BLAST of HG10010793 vs. NCBI nr
Match: KVH95117.1 (Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-57
Identity = 120/146 (82.19%), Postives = 130/146 (89.04%), Query Frame = 0 

Query: 66  WIKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 125
           + +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQ
Sbjct: 12  YTQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQ 71

Query: 126 SLPPGTTLGILHSVTKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR 185
           SLPP   L  ++ +  +       PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR
Sbjct: 72  SLPPVCLLSFIYIILDIFCWFYTQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR 131

Query: 186 CSKYLYTLCVFDSEKADKLKQSLPPG 205
           CSKYLYTLCVFD+EKA+KLKQSLPPG
Sbjct: 132 CSKYLYTLCVFDAEKANKLKQSLPPG 157

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BLAST of HG10010793 vs. NCBI nr
Match: KAG6512538.1 (hypothetical protein ZIOFF_030659 [Zingiber officinale])

HSP 1 Score: 218.4 bits (555), Expect = 5.7e-53
Identity = 130/214 (60.75%), Postives = 141/214 (65.89%), Query Frame = 0 

Query: 3   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
           PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARSVKIKRGKDVVKFKVRCSKYLYTLCVFDSEKANKLKQSLP 61

Query: 63  P------------GLWIKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY 122
           P            G W+           L    R     ++       V ++V    ++ 
Sbjct: 62  PVYLSGVLGALLMGYWL-----------LFECPRNMKMQLRTLVWPLGVNYRVSSFYHVL 121

Query: 123 TLCVFDSEKADKLKQSLPPGTTLGILHSVTKMPKQIHEIKDFLLTARRKDARSVKIKRSK 182
             CV              P  +  I H    +PKQIHEIKDFLLTARRKDARSVKIKR K
Sbjct: 122 VTCV--------------PVESSFIRHET--IPKQIHEIKDFLLTARRKDARSVKIKRGK 181

Query: 183 DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG 205
           DVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Sbjct: 182 DVVKFKVRCSKYLYTLCVFDSEKANKLKQSLPPG 188

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BLAST of HG10010793 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 142 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 201
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 202 PPG 205
           PPG
Sbjct: 61  PPG 63

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BLAST of HG10010793 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 142 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 201
           MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 202 PPG 205
           PPG
Sbjct: 61  PPG 63

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BLAST of HG10010793 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-24
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 3  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
          PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLP 61

Query: 63 PGLWIK 69
          PGL +K
Sbjct: 62 PGLAVK 67

[Close]
BLAST of HG10010793 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-22
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 3  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
          P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2  PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 63 PGLWIK 69
          PGL +K
Sbjct: 62 PGLAVK 67

[Close]
BLAST of HG10010793 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-22
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 3  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
          P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2  PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 63 PGLWIK 69
          PGL +K
Sbjct: 62 PGLAVK 67

[Close]
BLAST of HG10010793 vs. ExPASy TrEMBL
Match: A0A6A2WU09 (60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pilonHSYRG00380 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.9e-58
Identity = 144/251 (57.37%), Postives = 154/251 (61.35%), Query Frame = 0 

Query: 3    PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
            PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLP
Sbjct: 1247 PKQIHEIKDFLLTARRKDARLVKIKKSRDVVKFKVRCSKYLYTLCMSDAKKADKLKQSLP 1306

Query: 63   PG------------------LWIKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR 122
            PG                   +  PKQIHEIKDFLLTARRKDARSVKIK+S+DVVKFK  
Sbjct: 1307 PGKLLCINRVASFFVLNEPACYRIPKQIHEIKDFLLTARRKDARSVKIKKSRDVVKFK-- 1366

Query: 123  CSKYLYTLCVFDSEKADKLKQSLPPGTTLGILHSVTKMPKQIHEIKDFLLTARR------ 182
                                                  PKQIHEIKDFLLTARR      
Sbjct: 1367 --------------------------------------PKQIHEIKDFLLTARRKDARSV 1426

Query: 183  -------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEK 205
                                     KDARSVKIK+S+DVVKFKVRCSKYLYTL V D EK
Sbjct: 1427 KIKKSMCHPSAFMVMISELPSHCQKKDARSVKIKKSRDVVKFKVRCSKYLYTLYVSDVEK 1457

[Close]
BLAST of HG10010793 vs. ExPASy TrEMBL
Match: A0A103XQP8 (Ribosomal protein L38e (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_002813 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.4e-58
Identity = 120/146 (82.19%), Postives = 130/146 (89.04%), Query Frame = 0 

Query: 66  WIKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 125
           + +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQ
Sbjct: 12  YTQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQ 71

Query: 126 SLPPGTTLGILHSVTKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR 185
           SLPP   L  ++ +  +       PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR
Sbjct: 72  SLPPVCLLSFIYIILDIFCWFYTQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVR 131

Query: 186 CSKYLYTLCVFDSEKADKLKQSLPPG 205
           CSKYLYTLCVFD+EKA+KLKQSLPPG
Sbjct: 132 CSKYLYTLCVFDAEKANKLKQSLPPG 157

[Close]
BLAST of HG10010793 vs. ExPASy TrEMBL
Match: A0A0D9X019 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.1e-57
Identity = 114/132 (86.36%), Postives = 127/132 (96.21%), Query Frame = 0 

Query: 3   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 62
           PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 61

Query: 63  PGLWI-KPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAD 122
           PGL + +PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+
Sbjct: 62  PGLTVQEPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKAN 121

Query: 123 KLKQSLPPGTTL 134
           KLKQSLPPG T+
Sbjct: 122 KLKQSLPPGLTV 133

[Close]
BLAST of HG10010793 vs. ExPASy TrEMBL
Match: A0A4S4DHN9 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_012270 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.9e-42
Identity = 107/166 (64.46%), Postives = 115/166 (69.28%), Query Frame = 0 

Query: 69  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 128
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKADKLKQSLP
Sbjct: 22  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSRYLYTLCVFDSEKADKLKQSLP 81

Query: 129 PG------TTLGI------------------------LHSVT---KMPKQIHEIKDFLLT 188
           PG      TT G                          H  +     PKQIHEIKDFLLT
Sbjct: 82  PGAKTSCATTYGTYGQSKLTFKSRPASQEPTSRVHESAHGFSPSISQPKQIHEIKDFLLT 141

Query: 189 ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 202
           ARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Sbjct: 142 ARRKDARSVKIKRSKDVVKFKVRCARF---------ERARPVKQAL 178

[Close]
BLAST of HG10010793 vs. ExPASy TrEMBL
Match: A0A085NP85 (60S ribosomal protein L38 OS=Trichuris suis OX=68888 GN=M514_16628 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-34
Identity = 82/142 (57.75%), Postives = 113/142 (79.58%), Query Frame = 0 

Query: 3   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK----VRCSKYLYTLCVFDSEKADKLK 62
           P++I EIK+FLLTARR+DARSVKIK++    KFK    +RCSK+LYTL + D+++A+K++
Sbjct: 2   PREIKEIKEFLLTARRRDARSVKIKKNPFNTKFKLIIQLRCSKFLYTLVIQDNDRAEKIR 61

Query: 63  QSLPPGLWIK------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK----VRCSKY 122
           QSLPPGL +K      P++I EIK+FLLTARR+DARSVKIK++    KFK    +RCSK+
Sbjct: 62  QSLPPGLQVKDLYGLMPREIKEIKEFLLTARRRDARSVKIKKNPFNTKFKLIIQLRCSKF 121

Query: 123 LYTLCVFDSEKADKLKQSLPPG 131
           LYTL + D+++A+K++QSLPPG
Sbjct: 122 LYTLVIQDNDRAEKIRQSLPPG 143

[Close]
BLAST of HG10010793 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-28
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 142 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 201
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 202 PPG 205
           PPG
Sbjct: 61  PPG 63

[Close]
BLAST of HG10010793 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-28
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 142 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 201
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 202 PPG 205
           PPG
Sbjct: 61  PPG 63

The following BLAST results are available for this feature:
BLAST of HG10010793 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646721.19.8e-6190.21hypothetical protein Csa_005163 [Cucumis sativus][more]
KAE8658400.15.9e-5857.3760S ribosomal protein L38 [Hibiscus syriacus][more]
KAF3497693.11.3e-5783.45hypothetical protein DY000_02056630 [Brassica cretica][more]
KVH95117.11.3e-5782.19Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus][more]
KAG6512538.15.7e-5360.75hypothetical protein ZIOFF_030659 [Zingiber officinale][more]
BLAST of HG10010793 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O228601.5e-2795.2460S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1[more]
P462911.8e-2590.4860S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1[more]
Q95V844.4e-2483.3360S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1[more]
Q32PB97.1e-2277.2760S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4[more]
P631737.1e-2277.2760S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2[more]
BLAST of HG10010793 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A2WU092.9e-5857.3760S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pil... [more]
A0A103XQP86.4e-5882.19Ribosomal protein L38e (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 G... [more]
A0A0D9X0197.1e-5786.36Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1[more]
A0A4S4DHN94.9e-4264.46Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0122... [more]
A0A085NP851.3e-3457.7560S ribosomal protein L38 OS=Trichuris suis OX=68888 GN=M514_16628 PE=3 SV=1[more]
BLAST of HG10010793 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43460.11.0e-2895.24Ribosomal L38e protein family [more]
AT3G59540.11.0e-2895.24Ribosomal L38e protein family [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 3..66
e-value: 6.2E-32
score: 109.5
coord: 143..204
e-value: 6.0E-31
score: 106.4
coord: 69..131
e-value: 1.1E-31
score: 108.7
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 142..204
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 69..132
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 3..67
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 69..135
e-value: 2.5E-32
score: 112.8
coord: 2..68
e-value: 1.8E-32
score: 113.3
coord: 142..204
e-value: 8.0E-33
score: 114.3
NoneNo IPR availablePANTHERPTHR10965:SF1460S RIBOSOMAL PROTEIN L38coord: 3..67
NoneNo IPR availablePANTHERPTHR10965:SF1460S RIBOSOMAL PROTEIN L38coord: 142..204
coord: 69..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010793.1HG10010793.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022618 ribonucleoprotein complex assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome