HG10010770 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010770
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein 38
Location	Chr06: 25731259 .. 25732875 (-)
RNA-Seq Expression	HG10010770
Synteny	HG10010770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAGCAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACAACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAGTTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTTCCCCCCATTTTTTCCCCTCTTTTTTCTTCTTGTCAAAATGGGGATTTGATTTGATTTTGATTTGATTTCTGGGGTTTGATTGATTTTGTTTTTAGGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCTCCTGTTATTGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTTCTTTTTCATTCTTTTCATCTTTACCATTTTTTTCTTTTAAGTAAATGCTTTGATCTCTTCAATAGATCATAAAAATTCCCACATGCAATGTTTTTTTTTTTTTTTTTTCCATTCCAAAACCTAGGTTGATTTCCTTTAATTCTCACCATCAATGGAGGCCTTTGAATCTGCATTTTTTAAGGACTTTTTTCGGCTGAGAAATATATGAAATCCAAACAAACACAAAGGGAGCAAGATTTTCCCAAAATTAACCAAAAAAGTTGTGGATCAAATTTGCAGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCTCCTGCTTATCATGTTTCTTCATCATCTTATATCCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTAAGGTTGAAACAAGAATTTTAGATGGCATAAACAAGACCCAATTTTTCCATTTTGACATCTATTGATTAAAACTGTCCTCTATCTTTCATTTGGCCTCATTTCAGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGGTGTGAATCTATGTTTATTTGTTTACATATGTGTTGTTTCTATTTGGTTTAATGTTGTTTTGTGTTTGTTTGTGATCTTTTTGGCATTGATTTTGGTCTGAGCGTCGTGTTTTCGATGCAGAACTATTACGGTGTTTACGGGGGCCAACAATTTTCTCCTTATTACTCTGCGAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACAACTAATGCAGTACCCATATCTTCCTCAGCAGCACGGTTCGACTGGTATCCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCTAAATGAAATACAAATGCTTGTAATCTAATCCATTAGTATGTCATTGATGTTGGGAATTGTTATCTGAAGAATGTCATTTGTTTGGAGCATGATGTTGGTTTTGAAAGTGATTTGGAGATTTATGTGCAAAATGTAACAGGTGCAACAGCAACAACGCTAATGGCGGTTGGATCAGGACCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGTTAATTTCAACTGGATGA

mRNA sequence

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAGCAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACAACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAGTTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCTCCTGTTATTGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCTCCTGCTTATCATGTTTCTTCATCATCTTATATCCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAATTTTCTCCTTATTACTCTGCGAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACAACTAATGCAGTACCCATATCTTCCTCAGCAGCACGGTTCGACTGGTATCCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCAACAGCAACAACGCTAATGGCGGTTGGATCAGGACCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGTTAATTTCAACTGGATGA

Coding sequence (CDS)

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAGCAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACAACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAGTTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCTCCTGTTATTGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCTCCTGCTTATCATGTTTCTTCATCATCTTATATCCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAATTTTCTCCTTATTACTCTGCGAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACAACTAATGCAGTACCCATATCTTCCTCAGCAGCACGGTTCGACTGGTATCCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCAACAGCAACAACGCTAATGGCGGTTGGATCAGGACCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGTTAATTTCAACTGGATGA

Protein sequence

MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILSLPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG

Homology

[Close]

BLAST of HG10010770 vs. NCBI nr
Match: XP_038906691.1 (RNA-binding protein 24-B [Benincasa hispida])

HSP 1 Score: 558.1 bits (1437), Expect = 4.3e-155
Identity = 279/286 (97.55%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNISSS+NNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNAIGTTT GA ATT+M VGSGPSQASSAVASEPNSSELISTG
Sbjct: 241 LPGSNAIGTTTTGAIATTIMGVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of HG10010770 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 551.2 bits (1419), Expect = 5.2e-153
Identity = 274/286 (95.80%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SS+N+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFGIQYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQASSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of HG10010770 vs. NCBI nr
Match: XP_004140591.1 (RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_005255 [Cucumis sativus])

HSP 1 Score: 548.5 bits (1412), Expect = 3.4e-152
Identity = 272/286 (95.10%), Postives = 280/286 (97.90%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SS+N+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFG+QYP LMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TATT+ AVGSGPSQAS AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of HG10010770 vs. NCBI nr
Match: KAA0039913.1 (RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding protein 24-B [Cucumis melo var. makuwa])

HSP 1 Score: 526.2 bits (1354), Expect = 1.8e-145
Identity = 266/286 (93.01%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SS+N+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFGIQYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQASSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of HG10010770 vs. NCBI nr
Match: KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 470.7 bits (1210), Expect = 9.0e-129
Identity = 246/289 (85.12%), Postives = 256/289 (88.58%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH     SNN   S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH-----SNN---SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPTSQY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSAN I GPAGMFQNLYPYYAQSSQGY FG+QYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAG--ATATTLMAV-GSGPSQASSAVASEPNSSELISTG 287
           LP S A GTT+AG  AT TT MAV GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of HG10010770 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-29
Identity = 79/184 (42.93%), Postives = 105/184 (57.07%), Query Frame = 0


Query: 17  SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGF 76
           +S ++ G + DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 77  VTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPT---PQHGVGGRFRGASGIV 136
           VTFKD  AA RAC++ +P+I+GRRANCNLASLG    + PT   PQ G     R      
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNR-----A 122

Query: 137 TPPAYHVSSSSYI--------HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFS 190
           TPP     S  Y         HQ  +  + P  GY  A  + +  +     G  GG   +
Sbjct: 123 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFN-QKVGYVGGTYMN 180

[Close]

BLAST of HG10010770 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-28
Identity = 87/215 (40.47%), Postives = 116/215 (53.95%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGI 206
           +++         QPT  +  + P   Y  A Y+Q                    YSA   
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGIQYP 222
           +  A    + YPY A        ++ GYG+ +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP 200

[Close]

BLAST of HG10010770 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-27
Identity = 85/215 (39.53%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGI 206
           +++         QPT  +  + P   Y  A Y+Q                    YSA   
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGIQYP 222
           +  A    + YPY A        ++ GY + +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQP 200

[Close]

BLAST of HG10010770 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-27
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 20  SLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 79
           ++ G   DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT 
Sbjct: 23  AMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM 82

Query: 80  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPR 115
            D  AA RAC++P+P+IDGR+AN NLA LGA KPR
Sbjct: 83  ADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPR 116

[Close]

BLAST of HG10010770 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.0e-27
Identity = 87/214 (40.65%), Postives = 114/214 (53.27%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPTSQYS-FPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGIS 206
           +Y+         QPT+  S  P   Y  A Y+Q                    YSA    
Sbjct: 127 AYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQ--------------------YSA---- 186

Query: 207 GPAGMFQNLYPYYAQ-------SSQGYGFGIQYP 222
             A    + YPY A        ++ GYG+ +  P
Sbjct: 187 AAAAAAYDQYPYAASPAATGYVTAAGYGYAVPQP 195

[Close]

BLAST of HG10010770 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.5e-153
Identity = 274/286 (95.80%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SS+N+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFGIQYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQASSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of HG10010770 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.6e-152
Identity = 272/286 (95.10%), Postives = 280/286 (97.90%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SS+N+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFG+QYP LMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TATT+ AVGSGPSQAS AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of HG10010770 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.7e-146
Identity = 266/286 (93.01%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SS+N+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFGIQYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTLMAVGSGPSQASSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQASSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of HG10010770 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.2e-128
Identity = 242/288 (84.03%), Postives = 254/288 (88.19%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH        S+ S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH--------SNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPT+QY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSAN I GPAGMFQNLYPYYAQSS GY FG+QYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAG-ATATTLMAV-GSGPSQASSAVASEPNSSELISTG 287
           LP S A GTT+AG AT TT MAV GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPVSTATGTTSAGAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of HG10010770 vs. ExPASy TrEMBL
Match: A0A6J1HB82 (RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.8e-128
Identity = 242/289 (83.74%), Postives = 254/289 (87.89%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH        S+ S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH--------SNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK     PQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHK-----PQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPT+QY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPQLMQYPYLPQQHGSTGILS 240
           GQQFSPYYSAN I GPAGMFQNLYPYYAQSS GY FG+QYP LMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAG--ATATTLMAV-GSGPSQASSAVASEPNSSELISTG 287
           LP S A GTT+AG  AT TT MAV GSGP Q SSAVA+EPNSSE+ISTG
Sbjct: 241 LPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of HG10010770 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 171/340 (50.29%), Postives = 209/340 (61.47%), Query Frame = 0


Query: 1   MSQQRQFHNISSSSNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           M+QQRQF  +   +NN++        DT  TKIFVGGLAWETQR TMRRYFEQFGEI+EA
Sbjct: 1   MAQQRQF-QMEGGNNNTT--------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPT-PQ 120
           VVITDKNTGRSKGYGFVTFK+ +AA+RACQN +PVIDGRRANCNLA LGA KPRPPT P+
Sbjct: 61  VVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR 120

Query: 121 HGVGGRFRGAS---GIVTP-PAYHVSSSS--YIHQP----TSQYSFPLSGYGFAGYSQDR 180
           HG  GRFR      G+V P P +  SSSS  ++HQ     T+Q+ FP S YGF+GYSQ+ 
Sbjct: 121 HGT-GRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEG 180

Query: 181 IYPLNYYG--VYGGQQFSPYYSANGISGPAGMFQNLYPYY---------------AQSSQ 240
           +YP+NYY   +YGGQQFSP Y  +  +G  GMF   YPYY                Q+  
Sbjct: 181 MYPMNYYNHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQH 240

Query: 241 GYGFGIQY-----PQLMQYPYLPQQ-HGST-----------GILSLPGSNAI-------- 286
             GF  QY     P L+QYPYLP Q H S+            ILSLP S A+        
Sbjct: 241 HQGFSFQYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSP 300

[Close]

BLAST of HG10010770 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 179.1 bits (453), Expect = 5.0e-45
Identity = 104/208 (50.00%), Postives = 135/208 (64.90%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHG-VGGRFRGASGIVTPPAYHVSSSSY 146
           +AC +P+PVIDGRRANCNLA+ G  + +P +P HG VGGR      + +P   H  +++ 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPLNYYGVYGGQQFS-PYYSANGISG-PAGM 206
                 P S Y+ P +  +GF+ YS D  YP +YY VYGG     P Y +  ++G  A  
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAP 182

Query: 207 FQNLYPYYAQSSQGYGFGIQYPQLMQYP 228
               YP Y Q ++G G    Y  L  YP
Sbjct: 183 AAGFYP-YLQFAEGNGPVTGYAPL-HYP 205

[Close]

BLAST of HG10010770 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43
Identity = 104/209 (49.76%), Postives = 135/209 (64.59%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHG-VGGRFRGASGIVTPPAYHVSSSSY 146
           +AC +P+PVIDGRRANCNLA+ G  + +P +P HG VGGR      + +P   H  +++ 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPL-NYYGVYGGQQFS-PYYSANGISG-PAG 206
                 P S Y+ P +  +GF+ YS D  YP  +YY VYGG     P Y +  ++G  A 
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAA 182

Query: 207 MFQNLYPYYAQSSQGYGFGIQYPQLMQYP 228
                YP Y Q ++G G    Y  L  YP
Sbjct: 183 PAAGFYP-YLQFAEGNGPVTGYAPL-HYP 206

[Close]

BLAST of HG10010770 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-43
Identity = 101/209 (48.33%), Postives = 131/209 (62.68%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TK+FVGGLAWET + TM+++FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA 
Sbjct: 9   DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRG--------ASGIVTPPAY 146
            AC + +PVIDGRRANCNLASLG  + +P TP HG GGR            +G   PP  
Sbjct: 69  SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP- 128

Query: 147 HVSSSSYIHQPTSQYSFPLSGYGFAGYSQD-RIYPLNYYGVYG---GQQFSPYYSAN-GI 206
                ++ H P      PL+ +G++ YS D   +P N YG+YG   G Q+  Y + N G 
Sbjct: 129 -PQPPTFTHYP----HLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGG 188

Query: 207 SGPAGMFQNLYPYYAQSSQGYGFGIQYPQ 223
            G      +  P+Y     G+G G+Q+ Q
Sbjct: 189 GGLTAAAASATPFY-PCGGGHG-GVQFSQ 209

[Close]

BLAST of HG10010770 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-43
Identity = 101/209 (48.33%), Postives = 131/209 (62.68%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TK+FVGGLAWET + TM+++FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA 
Sbjct: 9   DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRG--------ASGIVTPPAY 146
            AC + +PVIDGRRANCNLASLG  + +P TP HG GGR            +G   PP  
Sbjct: 69  SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP- 128

Query: 147 HVSSSSYIHQPTSQYSFPLSGYGFAGYSQD-RIYPLNYYGVYG---GQQFSPYYSAN-GI 206
                ++ H P      PL+ +G++ YS D   +P N YG+YG   G Q+  Y + N G 
Sbjct: 129 -PQPPTFTHYP----HLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGG 188

Query: 207 SGPAGMFQNLYPYYAQSSQGYGFGIQYPQ 223
            G      +  P+Y     G+G G+Q+ Q
Sbjct: 189 GGLTAAAASATPFY-PCGGGHG-GVQFSQ 209

The following BLAST results are available for this feature:

BLAST of HG10010770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906691.1	4.3e-155	97.55	RNA-binding protein 24-B [Benincasa hispida]	[more]
XP_008460001.1	5.2e-153	95.80	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]
XP_004140591.1	3.4e-152	95.10	RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_00...	[more]
KAA0039913.1	1.8e-145	93.01	RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding prot...	[more]
KAG7025354.1	9.0e-129	85.12	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10010770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.9e-29	42.93	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	2.4e-28	40.47	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	2.7e-27	39.53	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q9H0Z9	4.6e-27	63.16	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q6GQD3	6.0e-27	40.65	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]

BLAST of HG10010770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBZ0	2.5e-153	95.80	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	1.6e-152	95.10	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A5A7TA32	8.7e-146	93.01	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1H998	2.2e-128	84.03	RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]
A0A6J1HB82	2.8e-128	83.74	RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]

BLAST of HG10010770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	1.1e-68	50.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.2	5.0e-45	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	1.2e-43	49.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	8.0e-43	48.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	8.0e-43	48.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 32..104 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..90 e-value: 4.6E-17 score: 61.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 31..108 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..126 e-value: 1.4E-25 score: 91.8
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..269
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 1..269
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 31..106 e-value: 6.8389E-46 score: 147.377
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010770.1	HG10010770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding