HG10010669 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010669
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMADS-box transcription factor
LocationChr06: 24640392 .. 24649982 (-)
RNA-Seq ExpressionHG10010669
SyntenyHG10010669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGTACTGACGCTTTTTCATTCTCCGTTTTTCTCTCCGATTCTTCAGTCTTAGAATGTGTTTTGGTTTCCTTCATATCGATTATATATATGATAGTGCAAGCTGAAGCTGAATGCCTTTTGAATGAACTTGAATTGAACTACTGCAGTTGCTTTTTCTTTCTATATATCTGCTATTTTAAGTGATTTGATTTCTAGGAACTTCTGTCATGGCTTTCTATATATCTGCTATTTTAAGTGATTTCGACGAACGAAATGCAACGCTCTTCCTTTTTCTGTTCTTCGATTTTTCTTCAGGAAAATCGATGATGGAGTTTTTTTTTCTTCTTTTTTCTTCCCTGCTTTCTTCGATCTGATGTTTATTTTCTTCTGTTTTCTTTGGATTATTTCTCCCCAGTGTATCCACTAACAAAATGCAGGACTGTTTGATATTTCAGAGAAAATCCCGGAAAATCGTGGGAACTTTGTTTTCCGACGCTTTTCTCGCTCTCTGATTTGTTTTCCTGAGTGTTTCCTTTTCGGCATTTACGTGTCAATAAAAATTTTAAAGACGTGTAATTACGAAACTGTCACTGCTTTTTTAATATACTAGTTGTAACTTATAACACATGTTTTAAGGTGAAATTTAAATGTCACAGTAAATATTTCACAATAACTTACTAACTCAGGAAAGAAATAGTAGCTAAAATTATATATTTTTTGTTTTAAGTTAATTTACCATAAATGTTTATGATAAAATACAGTAAATATTTGAAATTAAATTTTGAAGTAAGGAAAGAAATTGAAATGAAAAAAAAAAAAAGTGATGAATAAAATTTAAATACGTAATCGAAATTATGTACAAAATTTATAGAGTAAGTAGCAGGTTACCTCATATGACTGGTTTATTTTATTTTATTTTATTTTGTGTGTTTTCTTTAAATTGATTGATTTCTAGGAGAAAAAAAACGAATGTTGAATTAGAATAAAAAATTAAAAAGTAACTTATAATTAACATAATGCATTAATAAATGAATTTTACATTCTAACTTGAAGAGACATTAATTTTTTACTTGTTTGGAGTGTAGATTTATTTTGTTGACAATATGTGGGGTAGAGAGTCGAACCTTATATTTGAAAATTAATAGTACAAATTCATGTCAATCGAATTATGCTCAAACAAATTCATGTCAATCGAATTATGCTCAGGTTGGCAGTAAAAAATCTATTTGTTATTGTTTAATTTTCTATAAATTTGAGCTTATTTTCATAAAAAGATAACTATGTTATAATTGAAATTATAAAATAGAATTTTCATTTATAAATCATTCAACAAACAAATAGTAGATTTGCCTACATCATAGCTCGATTGGTTAAAATTTGTACTTTCAATCGGGAAGATTTAGATTCAATTCTCACACTCTACACATTACAAATAAATAAGAAAAGGAAAAAATAAAAAAGACTAAAGAGTAAACTTGATATTTTTTCTCCACTGAAATCCTATTTTGGAATTTATATTAAATTTTATTGTTAAAAAAAGTACGCCTACCCTATTGTAGGTGACTGGCGGTACCTTTTTGTATATAATAGGTATGGAATATAAAAAACTTATTGTTATTGTTATTATTATTATTATTTTCTTGTCCAATAAAAAACTTGAATTAATTTATTTTATTATCATATTATTCTATTGAATTGATTTTAAAAAGTTTTTGTCGAGGATATATCTTATACAATAAAATTAACACTGAAATTTTGGAGGTAGATAAAGTTAGTTGTCCTTTTAATACTAAGATTCATATAAAAACCATATAGCTGTCGATATTTCAAAATTATGATTGAAATTAAAATTAAGAAGATTAAGTACTCTTTTCGTTTTCTTTCATGAGTTGTCGTCTGTAGAATAGGTGTTTTGCTAGAAAGTCTTGAGTTGATGTCATTATATAAGAAATGATGAAAAATAAAATAAAGTAAAAATAGAAATGGATTATAATCATAATTTAATTAGAACTTTTAATAACTAAAAATTAAAAGTTCAAGTATGAAGGATAAAATGGGTAAATCATTTACTTAGAACTATTAATAACTAAAAATTAAAGGTCTAAGAATGAAGGACAAAATGGGAAAGTGAGCTTCCCTTTACACAAATGATTTTGGCCAGTTTTCATATTATTATGTTATTACTTTTTTTTATCACTAAATAATTTAGTAATATCTCTAATTTTGTTTCGATTATATCGTTAGCTGTCAACATCAAACTATTTATGTATTCAGTCAAGGGATGAGGATTACAGATCAGAAAGTAATAAAGACAAAACCAACTATTTTAAAACAGTGACAATAAATTTTTATTGATGTTCTGGTGAATTGATTTTTTTTATTATTATTTTCTAGTTGAACAGTGCTCATCGAATAAGGCATGTTTACTTTTAAAGTTCGAACTTCAATATTTGTAGACTAACTTAGTAGAGAGCATGCTTATTTTTATAAAATCAACGACCTTTCTATACATTATATTGAATAATGCATTATCAATTTTAATATTTACGGATGATGAGAAACTAAATTATAAAATATTCATATATAAAAGACTAATTAAAAAAATAAATTAATGAAACATACCCATTAGTCTTGGAAAGGAGAAGGCTATCAACATTTCAAGGTCTTTTGATAAACATTTGAATTCTTAACAGATTTAAAAAACTCCTTTTCTTTAGTTCGGAAAGCCTGATTTAGATTTAGATACATCTCCCACAAAAAGAAATTGGATGACAAAAAACGAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAATCGTTAGGGAAAGAAGGTGCCTTTAACTTCTAATCATGAGAGTGCATTAAAAAGATATACAAATTTAAAAATATTGATACAAATATATAATATATTTTAATTTTTATTAAAAAAATTATTTGGGAAAAGCAAAATTCAGATTACTCCTGGAAATATGCCTGATCATCCAATTTCTTCCCCATTAAGGAAGGATCAGGTTTATCCAACATTATATCATTAATTCATTCGGTTTTTGCGTCAAAAACCGACATGGATATTCAAATGAATAATTACCCCCCTTTCTCTCTTTTACCTGCCCACTTCTTAGAAAAGGGTCCTTCCTCTGTTTATATTCACTTCTCTTAACTTGCTGAAATGAATACTTTGCTTATTTCACGTGTCCAGCATTCATCAACTGCACTTGTTTGATTGTGTCGAATAGTGGTGTTCAATGCTTTCTACAATTCCGCATATACCTAAAAACAATGATTGAACCATTGAACTATCATGTTCAATCTTTTATTTATTTATTCATTCATTTTTTTTTTTCAAATAAATTGATCAAAGTAAAACGCACGAGAAAATTAATAAATTTTTAGAGAGAAAAACAGTACACTTGTTTTCTATTTCTTAAGCTTGTAAATTGTGGTTACATAAGCATTATTACTTTAGTTTTTCAAAAGAAAAATGTCTGGCTTCAAAATATTAAAATATTGAATGATTACCTTCTTAACTGCTGAAAAACTGCATATTTATGAAAAACTAAATTTCTACATAGGGTCTCATATGCATGGTAATTTACTAAAAAGGTTACATCTTATATGCTCTATCCAAGTTTCATAATTATATGTTCGTGGAGGGTTCTTTTTTTGATAGCTAAGAGTAGGCTTTCTGTGTTAGGCTTTCTTGTGATGGTTAATGATGAGGGTTTGATCATTAACTTTGAATATACTTATTATGTATCTACACGAAACTAAAATTATCCAAAATTGGCTCAGTCATCAAAGAGCTATTAAGATGTTAAGATAATGGATTTCTTTATTGTCATGTCATAGGGTTTGGTAATCAAATTAGCCTTAAGAAGAAAAAGATTGACGTAGCTACTATAATTTTAGAAACATAAAACATCTATTACCGGTATAGATAAGATAGATTTCTCTAGATCTTGACAATAAAATATGAAAAGAAAATTCTTAGACTTGGAAGTGTAGGGAATTTGATCATAAGATCATAATTCCTGCTTTTACATAAGAGAAAAAACCGTAAAGGAACCTCCCCGACCCTCGTTTACCCACCTAAAAATCAATTATTTTAATGGCTACCTGACAGTTAGCTAGCCCGTCTATGCATTCCATCATCAAGTTGTATATAGGGCATTCCAAACCGTCTTTCTTTACATAGAGAGAAAAATCACAGTGTCTTCATGATCTCTTGGAAATGTCAATTAACTCTGAATTTGAATTGAGAGGAAAAATAAAGGTTTTAGAGGGAGAAAATTCTAGTACACAATATACTTCTGTCACACCCTTTTAGAAATGATACGGGACCCACAAACATCCAAAGAATTGAGTATAGTACTCATTTTTCATTTTTAGAGACAGTGAACCTTTTATGAAGGCTGTGATCTCATTAAGTTACTATCTCGGTTGGGCCTTGGGGGCTTATTAGATCATTTGTATTTAGAGCCTTCTTTTCTGGTTATTTGGTTCCACTGTTTTCTCTTTTCTCTGTGCCCTTAAATATTCTTTCAGATTCCTCAATTATAGCTTGATTTTGTTTTCTTTTCATTTAAAAGCATTTATTCTAGCACAAAATTCAAAATCACATTAGCCTTTACACGAGTTAAGTTGAGTTAGAGCGAGTTAGAGGTATTTTTTTTATTGGCTCGAATTTTTGAAACTCTACCAACCCAATAAGAGAGAGGGCAACTCAATCCCAGTCCGACCCTTTAGGTATACTGACCTAGTTTGAGCCAAAATTTTTCCTCTAAAAACTCATGAATCAAATTGAACCAATCAATTCTTAAAAATGATAACCCAACCTAAATCACTAATTTGCCTTTGCCTGACCTCCAACCCTTATAATTCGAGTTTGATTAGTTGGGCTTTTTGGGTATGATCTATTAGAAAAGAATTGAAATAATAATAAATAAACATCTTAATAAGATCATTCATCTTTAAGTTCGGACAGAATTACTTTTGTTCTATGAATCTCTCTTACAAATTGAATAAGGAATATCAAAATAGATTATCTATGATTAGCATTTTGAAAAAATTTCAAATTTCTTACACATTTTAATGTTTATAATTATTGAAAAATAAAATCATCATTTAGTGAGATAAATACTGAAGTTCGTTAATGAATACAAACTTCATTCATTTCTTTTCTTTTAATGAAAAGGACAAGATTTGCTAGGTAAATGAGAAAGGGTACATGAGAAAAAAAAACTACATTATAAGAAAACCTTGTATTTTGTTTCAGAATAGCCCTGGAGCATCAAAAGTGTCATTAATATCATTAATATCCTCAAATTTTCAGGGGGAAGAAAAGGTTCAAAAGTGTATAACCACCTTACTTCCTAAGGCCAAGTTCAACTACATTGCATGCATGTTGAAAAGGTGCAAGGAAAATATATATATTAGGAAAAAATATGACTTCTGTAAAAAAAAAAAAAAAAAAAATGAAAGAATACACAAATATACAAGATAGAAAAGGCCCACAAAAAGGGGTCGGACTAAAAGAAGGACTTCAATCAAAAGAAATAAGACCAATTACAAAAGAGCCTAAAAATAGAGGCCCCAAACAGAAATAGAGAATCTAGCCAGGGACCAAACTCACATTCTTTAAAGATTCTATTGTTTCCCTCACCCTAAAGCCCCCACGAAATAGCGCTCCTCTAACTGCGCCATTAAATCCCCTCTTTATCTCTAAAGGAGAATGAAGAAAAAGCTCTTCAAACACCTCCCTACAACTTCGAGGGCTAACAAATTGTGCCAGCCGCTCAGGCAAAATCACAACTCCACATGGTCTTAATTAAAGTCCTTGTATGGCTGTGTATCATTTTTTTCCCCCTCAAAACTCAATTTTCTTCGTTTAGATACTCTCATTTTCCTCTCATTTATCCAATTCTTGCACCAATTTTCTCAATAACCAAAAATGACCCAAAAACTTCAAGTTAAAGTATAAAATCTCATAATTCCAAATCAAAATCTCATCTCAAAATTTAGCAAAACAATGAATTGATAAATACAAAAAGGGTTGAGAAAGAAGTATCATCTTTGATCATTGAGGATCCTTCTGAATTGATGACAAAAAATAGACTAATTTCAAATTCAAAAAAGATAATCAAAATCTTCATCTCTATGAATTTGGTGATACCTATGCTTTCTTTCTAAGAAGCACGAATAGGGATACAAGATGCAGCAACAGTGACACATCATTTTTTAAAAATTTAAGACACAGACAAGACAAAGACGCATCTATTAAAACATACATTTTTTAAAATATATATAATTTTTTAAACATGAACAAATTCAAAGTCTTTGTTTATGCATTTATATGCTTAAAAAATTAATTTAAAATATTTCGTTATCTAAATTTGTTATTTTTGTCATATATATGTCTATTTAGTAAATGCAACAAGAGTGTGATGCATGTCTAACAAATGTTGGTTTTATTTTGACTTTGTACAATGAGTGCCTACTGCCTAACGCATCTATTACACTAACAAGTGTCCTACACGTGTCAGACATGGACACTCTGGCCAAGCTAAACTAATTTGGCGATGTCCACATTTTCTTTCTTTTTCCTCTCCTAGATGTCCTAAAAATCAAGATCTAAATTCCTAACATGTCTCTTTTAATGTAATAACCCCAAACGTATTAACCCTCACGCTATTAACATATAACCTTGTTAAAACGTTGAAGTCTTCAGGTCCCTTGATGGTTCCATTATTTTCTTTTCTTCATGCTATAGCCTATGTACTTTGAATGTTATAGCCAATGACATTTTGCCCTTGAGCCCGAATCTTTGTGACATAGGATCACTGTGAGTAAGCATGATACCCATCCCTTCGATTGGGTGGTAAAAAGGGTTAAAGCACACACCGAAATCCTTGGAAAGATATTTCACTTGAGTTTTCCTCTTTACCCATTTGGTCCGTTGCATTGTGGAGAATGATAAGGATACATATTTTTTTGGAAGATCAGTGGGTAGGGGATAGTCCCCTCTACTTCGCATTTCGCCACCTTTAGCATTTGTCTTCTTTTAAAAATCTTCCAGTCTCTGATTTTTCGATTTTGGTCGGGGAGCTCTGTGCCCTTTTCTTTTGGTTTTGGGTTTTCGTTGTTATTTATCCAACAGGGAGACGAAAAAGGTTGCCTCTCTTCTTTCTTTGCTGGAAGAGTGCAATTTTAGGGAGGGGAGAAGGGAGGTTCGTGTATGGAGGCCTAATTCAATTGATGGCTTTTCTTGTAAATTTCTCTTTAGGTGGTTGTTGGATCCCTCTCCTGTTAGTGAGTCGGTCTTTATGTGGTGTGGAGGATTAAAATACCAAAAAAACAATTTATTTACCTGGAAAGTTCTGCTTGGTCAAGTGAACACTATGGATAAGCTTGCTAAGAAGATGACCTTGTTAAGGGGTCCTTTCTGCTGTATTCTCTGTAGGAAGGTGGAGGAAGACCTAGATCACCTTCTTTGAGACCGTCAATTTGCAAGGTTTATGTGGATTAATTTTCTACAAGAGTTTGAAGTTTAGATAGCTAGCCAGAGGGACATTCGTGCGATGATTGGAGAGCTCCTCCTTCATCTCTCTTTTAGAGAGAGGACGTTTGTTGTGATTTGTTGGGGTGTGCGTTGTGTGGTGGGACATTTGGAGGGAAAGGAACTGTATAGAGGTTTGGATAAAAACCCTAGTGAGGTTTGATCCAATGGGCTTCAATTTCGAAGCTTTTTTGTATTTATGCCCTAGGTAACAACTTACTTAATTGGAAACTCTTTCTTTAGAGAAGTTACTTTTATAGGCTTGTTTTTTTATATGCCCTTGTATTTTTTCATTTTTTTTCTCACTGAAAGTTGTTGATTCTATTAAAAAAAAAAAGTATTAGGTCACAAGTTGAAGCATAAAAAAGGTGAATAGGAGATTGTAGATAAATGCATCCATATACCAACAACAAGACATTTCTATTTTTTTTTTAAAAAAGTCAAAAAGTATTATTACAACTTTTAACTTTAGGGGCAGTTTCAATGGTGCTAACAATTTCGGCCCATTCCGACCATAAGAGTACTTTTTAGGGAAATTTTCACATATGAAAAAAATATCAAACTATTTACATAAAATAGCAAAAAAGACACTGATAGACATTGTAGACTTCTATCAATATCTATCAGTGATAGAATTCTATTATTTCTATTACTGATAGACTTTGATAGACTTCTATCGGCGTCTATCACAACTATTTAAAAATTTTGCTATTTTGTGTAAATAGTTTCCCTTATTTTTCTATTTTTAAAAACTTTCCTACTTTTTAATTGTTTTTAAAAGTTTTAAGAGTATTAATGAAAATTTTAAAAATGTACGAGTATTTTTTAAATGAAGAAAAAAATTTATGAGTATTTTCTATAATTTAAACTTAGAAAAGGTAATTGATTACCTTCATTTTCCTTTGGAAATAGGGTCTAAACACCACAGCGACTAGCTATTTAGGATGTGTAAATGGTATGAATTTCTAACTAAATAGTGTAGGATTAGTTAAAAATCACATAAGATAGTTCAAGTGCTCACATATATTGGAAAATTTCATTAATTTAGGAAAGATACTTCGAGGGGGGAAAAAAAATAAAGATCCTAACTGAATTTAAGAGATACTGATCCTTTGATTTAGTACACAATCTAGAAAGAAGGGAAAAAAACGTCTAACAAACCCTTAAAAATAAATAGTCTCAAGCCACAATCTTTAAACAGATTTCTTTCAGACCACAATCTCTTTGACAAAAAGTAATAACTAAATTCAAGGTGCATATATGAAGACTTTAAGAACTGCCTTTCAGACCAAATAATCTTACGACATATAGCCCCTACACTTTGAGCATAAGGTCATAGCTACAAAAATGTGATTTTGATGCGCTTTTCTACCCCCAAGGAGACATCCTAGTTTATGGCTAAGGACAAAAAGAGGATATACTCTATGGAGAATGTCAAAGGGTTTCCAAAGCTTATCTTGAAAATGATGCCTTCATTGTTCATAGTTAAACCCTAAACCCTAAAAGAAAAAAAAAAAAAAGGTTGTCTGCTCTCTCAACGGAAAAAAACCCATCTTCTCAATTTCTTCATTGTCGCTTTCCGCTCTCATCTTTTGTTTTCAATTATCAAGTTGTGACATTCTGATACCAAAAAAGTGTTATTCCTTAATCTAGGGGTGTGGTTTGCAATTTAAAGAGATTCCCTCTTTAGTTTCTAAAGGAGGGAAAGCTTGATTACTGTTTTCTGTTTATTATATTCCAATGTAGAAAATGTCCAGGCAAGTTATGTGGATTAAATCTATTTTGTTCAGGCCATTTTTGGAGATTTTCTTGGCTTCTTCTGTCAATGTTATCATGTTTGACGTTTGTGGTGGTGTTGATTGA

mRNA sequence

ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGCCATTTTTGGAGATTTTCTTGGCTTCTTCTGTCAATGTTATCATGTTTGACGTTTGTGGTGGTGTTGATTGA

Coding sequence (CDS)

ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGCCATTTTTGGAGATTTTCTTGGCTTCTTCTGTCAATGTTATCATGTTTGACGTTTGTGGTGGTGTTGATTGA

Protein sequence

MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNRPFLEIFLASSVNVIMFDVCGGVD
Homology
[Close]
BLAST of HG10010669 vs. NCBI nr
Match: KAG6576135.1 (Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 7.2e-26
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVK IEDRCNRH+TFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 NRPFL 66
          NR ++
Sbjct: 61 NRIYV 65

[Close]
BLAST of HG10010669 vs. NCBI nr
Match: KAG7014654.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 9.5e-26
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVK IEDRCNRH+TFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 NR 63
          NR
Sbjct: 61 NR 62

[Close]
BLAST of HG10010669 vs. NCBI nr
Match: XP_008459847.1 (PREDICTED: MADS-box transcription factor 8-like [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVKLIEDRCNRH+TFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 NRPFLEIFLASSVNVIM 78
          N         S +N+IM
Sbjct: 61 N---------SLLNIIM 68

[Close]
BLAST of HG10010669 vs. NCBI nr
Match: XP_023514717.1 (MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 4.7e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVK IEDRCNRH+TFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]
BLAST of HG10010669 vs. NCBI nr
Match: KAG6592961.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025372.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIE+K IED CNRH+TFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 NR 63
          +R
Sbjct: 61 DR 62

[Close]
BLAST of HG10010669 vs. ExPASy Swiss-Prot
Match: Q9SAR1 (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS8 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-18
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]
BLAST of HG10010669 vs. ExPASy Swiss-Prot
Match: Q38836 (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-18
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR KIE+K IE+  NR +TFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]
BLAST of HG10010669 vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of HG10010669 vs. ExPASy Swiss-Prot
Match: O04067 (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of HG10010669 vs. ExPASy Swiss-Prot
Match: Q8LLR0 (Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of HG10010669 vs. ExPASy TrEMBL
Match: A0A1S3CCC5 (MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.8e-26
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVKLIEDRCNRH+TFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 NRPFLEIFLASSVNVIM 78
          N         S +N+IM
Sbjct: 61 N---------SLLNIIM 68

[Close]
BLAST of HG10010669 vs. ExPASy TrEMBL
Match: A0A6J1H7I9 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111460798 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIE+K IED CNRH+TFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 N 62
          +
Sbjct: 61 D 61

[Close]
BLAST of HG10010669 vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIE+K IED CNRH+TFCKRRSGLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          +
Sbjct: 61 D 61

[Close]
BLAST of HG10010669 vs. ExPASy TrEMBL
Match: A0A6J1DME3 (MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.5e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
           MGRKKIEVK IED CNRH+TFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]
BLAST of HG10010669 vs. ExPASy TrEMBL
Match: A0A6J1DPA0 (MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.5e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1   MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
           MGRKKIEVK IED CNRH+TFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]
BLAST of HG10010669 vs. TAIR 10
Match: AT1G24260.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of HG10010669 vs. TAIR 10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of HG10010669 vs. TAIR 10
Match: AT1G24260.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of HG10010669 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR KIE+K IE+  NR +TFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]
BLAST of HG10010669 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR KIE+K IE+  NR +TFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

The following BLAST results are available for this feature:
BLAST of HG10010669 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576135.17.2e-2689.23Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. soro... [more]
KAG7014654.19.5e-2693.55Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_008459847.11.6e-2577.92PREDICTED: MADS-box transcription factor 8-like [Cucumis melo][more]
XP_023514717.14.7e-2593.44MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo][more]
KAG6592961.11.4e-2491.94Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. soror... [more]
BLAST of HG10010669 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SAR12.0e-1866.67MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS... [more]
Q388367.5e-1867.21Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=... [more]
Q034897.5e-1863.93Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE... [more]
O040677.5e-1863.93Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 ... [more]
Q8LLR07.5e-1863.93Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=... [more]
BLAST of HG10010669 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CCC57.8e-2677.92MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=... [more]
A0A6J1H7I93.3e-2491.80truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1KPU74.3e-2490.16MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4... [more]
A0A6J1DME39.5e-2488.52MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=367... [more]
A0A6J1DPA09.5e-2488.52MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 G... [more]
BLAST of HG10010669 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G24260.15.4e-1963.93K-box region and MADS-box transcription factor family protein [more]
AT1G24260.25.4e-1963.93K-box region and MADS-box transcription factor family protein [more]
AT1G24260.35.4e-1963.93K-box region and MADS-box transcription factor family protein [more]
AT4G09960.25.4e-1967.21K-box region and MADS-box transcription factor family protein [more]
AT4G09960.15.4e-1967.21K-box region and MADS-box transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 76.85
coord: 38..59
score: 52.14
coord: 3..23
score: 49.16
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 6.0E-31
score: 118.8
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..57
e-value: 3.6E-23
score: 80.8
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 29.183725
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..77
e-value: 2.6E-22
score: 80.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 1..64
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..68
NoneNo IPR availablePANTHERPTHR48019:SF72MADS-BOX TRANSCRIPTION FACTOR 6coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010669.1HG10010669.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding