HG10010652 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010652
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein kinase domain-containing protein
Location	Chr06: 24441029 .. 24441376 (+)
RNA-Seq Expression	HG10010652
Synteny	HG10010652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACAGGGTTAAAGAACTCAGATCTCCCAATGGTAGCATTGCAAAAGATTAGAATTGGGAAGCTAGAAGAGGTTGTGGATCCACTTCTATACTATCATGAGAAACCTCCTCAGAGCAAAGAGCAAATAGAGATAGTAGCAGACCTTGCCACAAGGTGCTTGCTTTTCGGCCGAGACGGGAAGTTGCGAATGAGCGACGTTTCGAAGGAGTTGACGCATGTAATGAAAGAAAACGTCGTCGTCGACGGAGATAGCACGAGAGGGCCTGCAATAGAGGAAACTTTCTCCAATTCAAGCCTTCTTCAAATGATATCAATGTCTCCTGATTCAATCCTTGCTCCATGA

mRNA sequence

ATGGTAACAGGGTTAAAGAACTCAGATCTCCCAATGGTAGCATTGCAAAAGATTAGAATTGGGAAGCTAGAAGAGGTTGTGGATCCACTTCTATACTATCATGAGAAACCTCCTCAGAGCAAAGAGCAAATAGAGATAGTAGCAGACCTTGCCACAAGGTGCTTGCTTTTCGGCCGAGACGGGAAGTTGCGAATGAGCGACGTTTCGAAGGAGTTGACGCATGTAATGAAAGAAAACGTCGTCGTCGACGGAGATAGCACGAGAGGGCCTGCAATAGAGGAAACTTTCTCCAATTCAAGCCTTCTTCAAATGATATCAATGTCTCCTGATTCAATCCTTGCTCCATGA

Coding sequence (CDS)

ATGGTAACAGGGTTAAAGAACTCAGATCTCCCAATGGTAGCATTGCAAAAGATTAGAATTGGGAAGCTAGAAGAGGTTGTGGATCCACTTCTATACTATCATGAGAAACCTCCTCAGAGCAAAGAGCAAATAGAGATAGTAGCAGACCTTGCCACAAGGTGCTTGCTTTTCGGCCGAGACGGGAAGTTGCGAATGAGCGACGTTTCGAAGGAGTTGACGCATGTAATGAAAGAAAACGTCGTCGTCGACGGAGATAGCACGAGAGGGCCTGCAATAGAGGAAACTTTCTCCAATTCAAGCCTTCTTCAAATGATATCAATGTCTCCTGATTCAATCCTTGCTCCATGA

Protein sequence

MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRDGKLRMSDVSKELTHVMKENVVVDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP

Homology

[Close]

BLAST of HG10010652 vs. NCBI nr
Match: XP_004140635.1 (probably inactive receptor-like protein kinase At2g46850 [Cucumis sativus] >KGN46477.1 hypothetical protein Csa_005115 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPP SKEQIEIVADLATRCLLFGRD
Sbjct: 518 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPHSKEQIEIVADLATRCLLFGRD 577

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTHVMKENVV VDG STRGP+IEETFSNSSLLQMISMSPDSILAP
Sbjct: 578 GKLRMSDVSKELTHVMKENVVFVDGGSTRGPSIEETFSNSSLLQMISMSPDSILAP 633

[Close]

BLAST of HG10010652 vs. NCBI nr
Match: XP_038875906.1 (probably inactive receptor-like protein kinase At2g46850 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPP SKEQIEIVADLATRCLLFGRD
Sbjct: 511 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPHSKEQIEIVADLATRCLLFGRD 570

Query: 61  GKLRMSDVSKELTHVMKEN-VVVDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTH+MK+N VVV+G STRG A+EETFSNSSLLQMISMSPDSILAP
Sbjct: 571 GKLRMSDVSKELTHIMKDNVVVVEGGSTRGSALEETFSNSSLLQMISMSPDSILAP 626

[Close]

BLAST of HG10010652 vs. NCBI nr
Match: TYK24697.1 (putative inactive receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 109/116 (93.97%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQ KEQIEIVADLATRCLLFGRD
Sbjct: 509 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQIKEQIEIVADLATRCLLFGRD 568

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTH+MKENVV VDG S R P IEETFSNSSLLQMISMSPDSILAP
Sbjct: 569 GKLRMSDVSKELTHLMKENVVFVDGGSMRMPTIEETFSNSSLLQMISMSPDSILAP 624

[Close]

BLAST of HG10010652 vs. NCBI nr
Match: XP_008459811.1 (PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Cucumis melo] >KAA0039800.1 putative inactive receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 109/116 (93.97%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQ KEQIEIVADLATRCLLFGRD
Sbjct: 518 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQIKEQIEIVADLATRCLLFGRD 577

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTH+MKENVV VDG S R P IEETFSNSSLLQMISMSPDSILAP
Sbjct: 578 GKLRMSDVSKELTHLMKENVVFVDGGSMRMPTIEETFSNSSLLQMISMSPDSILAP 633

[Close]

BLAST of HG10010652 vs. NCBI nr
Match: XP_023514582.1 (probably inactive receptor-like protein kinase At2g46850 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDP+LYYHE+PP S+EQIEIVADLATRCLLFGRD
Sbjct: 532 MVTGLKNSDLPMVALQKIRIGKLEEVVDPVLYYHEQPPHSREQIEIVADLATRCLLFGRD 591

Query: 61  GKLRMSDVSKELTHVMKENVVVDGDS----TRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKEL HVMKENVV  G      TRGPAIEETFSNSSLLQMISMSPDSILAP
Sbjct: 592 GKLRMSDVSKELVHVMKENVVDGGGGGGGITRGPAIEETFSNSSLLQMISMSPDSILAP 650

[Close]

BLAST of HG10010652 vs. ExPASy Swiss-Prot
Match: Q8S8N4 (Probably inactive receptor-like protein kinase At2g46850 OS=Arabidopsis thaliana OX=3702 GN=At2g46850 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-27
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 1   MVTGLKNSDLPMV-ALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGR 60
           +VTGLK  +  +  ALQKIR GKLEE+VDP +Y+HE+P   +EQI +VAD+ATRC+LFG 
Sbjct: 517 IVTGLKQREETVTQALQKIRSGKLEEIVDPSMYFHEQPVAFREQIGLVADIATRCVLFGG 576

Query: 61  DGKLRMSDVSKELTHVMKENVVVDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           DGK  M D ++EL  +   N     D  R   IEETFSNSSLLQMISMSPDSI  P
Sbjct: 577 DGKFGMVDAARELLQIAGNNGGGGCDKKR-DGIEETFSNSSLLQMISMSPDSIYLP 631

[Close]

BLAST of HG10010652 vs. ExPASy TrEMBL
Match: A0A0A0KDN5 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095930 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPP SKEQIEIVADLATRCLLFGRD
Sbjct: 518 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPHSKEQIEIVADLATRCLLFGRD 577

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTHVMKENVV VDG STRGP+IEETFSNSSLLQMISMSPDSILAP
Sbjct: 578 GKLRMSDVSKELTHVMKENVVFVDGGSTRGPSIEETFSNSSLLQMISMSPDSILAP 633

[Close]

BLAST of HG10010652 vs. ExPASy TrEMBL
Match: A0A5D3DM37 (Putative inactive receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002530 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 109/116 (93.97%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQ KEQIEIVADLATRCLLFGRD
Sbjct: 509 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQIKEQIEIVADLATRCLLFGRD 568

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTH+MKENVV VDG S R P IEETFSNSSLLQMISMSPDSILAP
Sbjct: 569 GKLRMSDVSKELTHLMKENVVFVDGGSMRMPTIEETFSNSSLLQMISMSPDSILAP 624

[Close]

BLAST of HG10010652 vs. ExPASy TrEMBL
Match: A0A5A7T964 (Putative inactive receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00700 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 109/116 (93.97%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQ KEQIEIVADLATRCLLFGRD
Sbjct: 518 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQIKEQIEIVADLATRCLLFGRD 577

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTH+MKENVV VDG S R P IEETFSNSSLLQMISMSPDSILAP
Sbjct: 578 GKLRMSDVSKELTHLMKENVVFVDGGSMRMPTIEETFSNSSLLQMISMSPDSILAP 633

[Close]

BLAST of HG10010652 vs. ExPASy TrEMBL
Match: A0A1S3CC95 (probably inactive receptor-like protein kinase At2g46850 OS=Cucumis melo OX=3656 GN=LOC103498831 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 109/116 (93.97%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQ KEQIEIVADLATRCLLFGRD
Sbjct: 518 MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQIKEQIEIVADLATRCLLFGRD 577

Query: 61  GKLRMSDVSKELTHVMKENVV-VDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKELTH+MKENVV VDG S R P IEETFSNSSLLQMISMSPDSILAP
Sbjct: 578 GKLRMSDVSKELTHLMKENVVFVDGGSMRMPTIEETFSNSSLLQMISMSPDSILAP 633

[Close]

BLAST of HG10010652 vs. ExPASy TrEMBL
Match: A0A6J1KRY1 (probably inactive receptor-like protein kinase At2g46850 OS=Cucurbita maxima OX=3661 GN=LOC111497711 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 105/117 (89.74%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MVTGLKNSDLPMVALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGRD 60
           MVTGLKNSDLPMVALQKIRIGKLEEVVDP+LYYHE+PP S+EQIEIVADLATRCLLFGRD
Sbjct: 526 MVTGLKNSDLPMVALQKIRIGKLEEVVDPVLYYHEQPPHSREQIEIVADLATRCLLFGRD 585

Query: 61  GKLRMSDVSKELTHVMKENVVVDGDS--TRGPAIEETFSNSSLLQMISMSPDSILAP 116
           GKLRMSDVSKEL HVMKENV   G    TRGPAIEETFSNSSLLQMISMSPDSILAP
Sbjct: 586 GKLRMSDVSKELVHVMKENVDGGGGGGITRGPAIEETFSNSSLLQMISMSPDSILAP 642

[Close]

BLAST of HG10010652 vs. TAIR 10
Match: AT2G46850.1 (Protein kinase superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 1   MVTGLKNSDLPMV-ALQKIRIGKLEEVVDPLLYYHEKPPQSKEQIEIVADLATRCLLFGR 60
           +VTGLK  +  +  ALQKIR GKLEE+VDP +Y+HE+P   +EQI +VAD+ATRC+LFG 
Sbjct: 517 IVTGLKQREETVTQALQKIRSGKLEEIVDPSMYFHEQPVAFREQIGLVADIATRCVLFGG 576

Query: 61  DGKLRMSDVSKELTHVMKENVVVDGDSTRGPAIEETFSNSSLLQMISMSPDSILAP 116
           DGK  M D ++EL  +   N     D  R   IEETFSNSSLLQMISMSPDSI  P
Sbjct: 577 DGKFGMVDAARELLQIAGNNGGGGCDKKR-DGIEETFSNSSLLQMISMSPDSIYLP 631

The following BLAST results are available for this feature:

BLAST of HG10010652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140635.1	2.1e-52	96.55	probably inactive receptor-like protein kinase At2g46850 [Cucumis sativus] >KGN4...	[more]
XP_038875906.1	1.1e-50	93.10	probably inactive receptor-like protein kinase At2g46850 [Benincasa hispida]	[more]
TYK24697.1	4.4e-50	93.97	putative inactive receptor-like protein kinase [Cucumis melo var. makuwa]	[more]
XP_008459811.1	4.4e-50	93.97	PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Cucumis mel...	[more]
XP_023514582.1	1.4e-48	89.08	probably inactive receptor-like protein kinase At2g46850 [Cucurbita pepo subsp. ...	[more]

BLAST of HG10010652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8N4	3.2e-27	58.62	Probably inactive receptor-like protein kinase At2g46850 OS=Arabidopsis thaliana...	[more]

BLAST of HG10010652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDN5	1.0e-52	96.55	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095...	[more]
A0A5D3DM37	2.1e-50	93.97	Putative inactive receptor-like protein kinase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7T964	2.1e-50	93.97	Putative inactive receptor-like protein kinase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CC95	2.1e-50	93.97	probably inactive receptor-like protein kinase At2g46850 OS=Cucumis melo OX=3656...	[more]
A0A6J1KRY1	2.6e-48	89.74	probably inactive receptor-like protein kinase At2g46850 OS=Cucurbita maxima OX=...	[more]

BLAST of HG10010652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46850.1	2.2e-28	58.62	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27005:SF45	OS10G0351500 PROTEIN	coord: 9..110
None	No IPR available	PANTHER	PTHR27005	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	coord: 9..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010652.1	HG10010652.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004713	protein tyrosine kinase activity