HG10010589 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010589
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 23656460 .. 23658048 (+)
RNA-Seq ExpressionHG10010589
SyntenyHG10010589
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCTACTTTCGAGTCCGAGGATGAGGAGGATGTAGGGGAAGTTGATTATACTTACTTTGTCTCAATTGATATAGAGGATTTCAAAGGGATTGTGGAAGAGTTAGGCGATGATGATGAAGGTAATTAGATATAATAATAATAATAATAACTCAACTTTTTCTTTTCCATCTTCTATTTTCTTGAAAAATAAAGGTTGTAATAAGTTCAATTTTATTTCTAAAGATATTCTGTGTGTATCATCTTTTGTGACAGTTAGTGTTGTTCTAACGAATTCACAAATCAAGTTCTCTGTTGGATGGAGACTCATTACTCTTACTACAGTGGTAATTTTTTTAAATGTTTTTGTTTAATGATTATTCAAAATCATTAGTTTTGTAGGCATGTTTAACGTTTAGTTTGTTGAGTAGTGTGTTTCAAATAGAGTATATAAATTGGAAGAATTTATGGAATAATGTAAAATAATTTAAGTATCGTTTAGTAACCATTTTGCTTTTAGTTTTTAGTTTTTAAAAATTATACATACCTATTATCTTTTATTTTCTTACCATGATTTGTATCAATCTTAAGTAGAAGAATTGTATATTTAACCAAATTAAAAAAAAAAAAGGCTTTTAAAAACTACTTCTTTTAGTTTTTTAAATTTTGACTTGATTTTTAAAAAAAATTAGTAAAAAGTAAAAATCAAAGTAAGAGATTTAGAGGTAGAAGAGGTGTTTATAAGTTTAATTTTTAAAAACTATAAACGAAATAGTTATCAAACAAGGTCTTAATTTTCATTTGATAATTATTTGGTTTTTTAAAATTAATAAGCTTATAAATATAATATCTCTATCTAGCTACACGTATTTTTTTTAATCCACTTTCCACCAATATTATAAAAAAAACTAAGCTAAACTTTGAAAACTAAAAAACAAAAAGTTTTTGTGTTTTTAAAATTTTGCTAAGAATTTAACTTTTTGTTTAAGAAACGTGAAAACCATAGTATGAAATTGATGAGAAAACTAACATAAATTTTAATAATAGAAAACTAAAAACAAAGACCCTATTTAATAACCATTTAATTTTTAGAGATTGAAGTTTATTTTCTCTGTTATGTTATCCATTTTCCATTAATGTTTTCAAAAACTAAGATAAATTCTTTAAGATAGGTGGAAACTGAAAACCCTTATAGAGGAAAACTAAGAGGAAACAAACATAAATTTCAAAAATAGAAAAGTAAAATTAAAATCATTATCAAACTGGACCGAAATCCTTACCAAAGAGAGTCTTAACAAGTTTATGAACAAAACTTAGTCTTTAATTAAAGCACCTAAAAGTAATTATGTGCAAGCATAGGAACGATTTGGTTACATGAATTTAGAGTACTTATTGGTTGATGTTTTACAGAGAAAAGAATGCATAATTGGAGGCATTGCAGTAGGCGAAGAAATTCAAACCTCAATCAATTTCGATCCCATTGATTTTTTCAATAGTTTCAAATCCGAAAGAGTATGGTTCTTCAAGTCGAATGATCATGATATAATGCTCACGGCTCCTATGGGATTGCATACTCGAATTTCGTCCTATTTTCCTCAGAGACTTTGA

mRNA sequence

ATGTTGCCTACTTTCGAGTCCGAGGATGAGGAGGATGTAGGGGAAGTTGATTATACTTACTTTGTCTCAATTGATATAGAGGATTTCAAAGGGATTGTGGAAGAGTTAGGCGATGATGATGAAGTTAGTGTTGTTCTAACGAATTCACAAATCAAGTTCTCTGTTGGATGGAGACTCATTACTCTTACTACAGTGAGAAAAGAATGCATAATTGGAGGCATTGCAGTAGGCGAAGAAATTCAAACCTCAATCAATTTCGATCCCATTGATTTTTTCAATAGTTTCAAATCCGAAAGAGTATGGTTCTTCAAGTCGAATGATCATGATATAATGCTCACGGCTCCTATGGGATTGCATACTCGAATTTCGTCCTATTTTCCTCAGAGACTTTGA

Coding sequence (CDS)

ATGTTGCCTACTTTCGAGTCCGAGGATGAGGAGGATGTAGGGGAAGTTGATTATACTTACTTTGTCTCAATTGATATAGAGGATTTCAAAGGGATTGTGGAAGAGTTAGGCGATGATGATGAAGTTAGTGTTGTTCTAACGAATTCACAAATCAAGTTCTCTGTTGGATGGAGACTCATTACTCTTACTACAGTGAGAAAAGAATGCATAATTGGAGGCATTGCAGTAGGCGAAGAAATTCAAACCTCAATCAATTTCGATCCCATTGATTTTTTCAATAGTTTCAAATCCGAAAGAGTATGGTTCTTCAAGTCGAATGATCATGATATAATGCTCACGGCTCCTATGGGATTGCATACTCGAATTTCGTCCTATTTTCCTCAGAGACTTTGA

Protein sequence

MLPTFESEDEEDVGEVDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLITLTTVRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSNDHDIMLTAPMGLHTRISSYFPQRL
Homology
BLAST of HG10010589 vs. NCBI nr
Match: XP_022928046.1 (uncharacterized protein LOC111434948 [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-21
Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 0

Query: 1   MLPTFESEDEEDVGEVDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLI 60
           ++PT   E + + G +DY  FVS D+  F+ +V  L +++   + +TNSQIKF V    +
Sbjct: 117 LIPTSPPERDINEGAIDYASFVSFDLFHFRRLVTGLENNEHAYLTITNSQIKFLVEDVEV 176

Query: 61  TLTTVRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLH 120
            LTT RKECIIGG A G+E ++++   P +FF +F SER+W FKS D   + L APMGL+
Sbjct: 177 VLTTQRKECIIGGFAAGDEFESAMCLCPWEFFYNFTSERLWLFKSYDPKGMTLIAPMGLY 236

Query: 121 TRISSYFPQ 129
             ISSYFP+
Sbjct: 237 VHISSYFPE 245

BLAST of HG10010589 vs. NCBI nr
Match: XP_023547372.1 (uncharacterized protein LOC111806340 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 0

Query: 9   DEEDVGEVDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLITLTTVRKE 68
           DEE + +VDY+ F SID E+FK +V  +G  ++V+  LT S+IKF        LT   ++
Sbjct: 106 DEELIAKVDYSLFFSIDSEEFKLLVIWIG-VNKVTATLTRSRIKFINPSGEFVLTQQERK 165

Query: 69  CIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLHTRISSYFP 128
           CIIGGI  G+EI+ SI   PI+FFNSF S+RVWFFK+ D +  ++ +PMGLH  ISSYFP
Sbjct: 166 CIIGGIREGDEIRFSITLLPIEFFNSFTSKRVWFFKTYDSNGTLIISPMGLHAEISSYFP 225

Query: 129 QRL 131
            RL
Sbjct: 226 GRL 227

BLAST of HG10010589 vs. NCBI nr
Match: KAE8651933.1 (hypothetical protein Csa_006731 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 60/132 (45.45%), Postives = 92/132 (69.70%), Query Frame = 0

Query: 1   MLPTFESEDEEDVGEVDY-TYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKF--SVGW 60
           +LP    E+  +VG+VDY ++FVS+ +E+F+ +V+++ + D V V +T+SQIKF   V  
Sbjct: 43  VLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDH 102

Query: 61  RLITLTTVRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPM 120
              + TT   +CIIGGI  GEEI+  I+  P++F+ +F S+RVWFF S D + ++L APM
Sbjct: 103 WETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPM 162

Query: 121 GLHTRISSYFPQ 129
           G++T ISS+FPQ
Sbjct: 163 GVYTHISSFFPQ 174

BLAST of HG10010589 vs. NCBI nr
Match: XP_031737287.1 (uncharacterized protein LOC116402216 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 60/132 (45.45%), Postives = 92/132 (69.70%), Query Frame = 0

Query: 1   MLPTFESEDEEDVGEVDY-TYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKF--SVGW 60
           +LP    E+  +VG+VDY ++FVS+ +E+F+ +V+++ + D V V +T+SQIKF   V  
Sbjct: 121 VLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDH 180

Query: 61  RLITLTTVRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPM 120
              + TT   +CIIGGI  GEEI+  I+  P++F+ +F S+RVWFF S D + ++L APM
Sbjct: 181 WETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPM 240

Query: 121 GLHTRISSYFPQ 129
           G++T ISS+FPQ
Sbjct: 241 GVYTHISSFFPQ 252

BLAST of HG10010589 vs. NCBI nr
Match: XP_031737417.1 (uncharacterized protein LOC116402255 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 57/124 (45.97%), Postives = 87/124 (70.16%), Query Frame = 0

Query: 8   EDEEDVGEVDY-TYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLITLTTVR 67
           E+  +VG+VDY ++FVS+ ++DF+ +V+++ D D V + + +SQI F V     T  T +
Sbjct: 5   EEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETSFTAK 64

Query: 68  K-ECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLHTRISS 127
           + ECIIGGI  G+EI   I+F P++F+  F S+RVWFF S D + ++L APMG++T ISS
Sbjct: 65  EGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGVYTHISS 124

Query: 128 YFPQ 129
           +FPQ
Sbjct: 125 FFPQ 128

BLAST of HG10010589 vs. ExPASy TrEMBL
Match: A0A6J1EJ67 (uncharacterized protein LOC111434948 OS=Cucurbita moschata OX=3662 GN=LOC111434948 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 0

Query: 1   MLPTFESEDEEDVGEVDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLI 60
           ++PT   E + + G +DY  FVS D+  F+ +V  L +++   + +TNSQIKF V    +
Sbjct: 117 LIPTSPPERDINEGAIDYASFVSFDLFHFRRLVTGLENNEHAYLTITNSQIKFLVEDVEV 176

Query: 61  TLTTVRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLH 120
            LTT RKECIIGG A G+E ++++   P +FF +F SER+W FKS D   + L APMGL+
Sbjct: 177 VLTTQRKECIIGGFAAGDEFESAMCLCPWEFFYNFTSERLWLFKSYDPKGMTLIAPMGLY 236

Query: 121 TRISSYFPQ 129
             ISSYFP+
Sbjct: 237 VHISSYFPE 245

BLAST of HG10010589 vs. ExPASy TrEMBL
Match: A0A0A0LMQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 57/124 (45.97%), Postives = 87/124 (70.16%), Query Frame = 0

Query: 8   EDEEDVGEVDY-TYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLITLTTVR 67
           E+  +VG+VDY ++FVS+ ++DF+ +V+++ D D V + + +SQI F V     T  T +
Sbjct: 5   EEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETSFTAK 64

Query: 68  K-ECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLHTRISS 127
           + ECIIGGI  G+EI   I+F P++F+  F S+RVWFF S D + ++L APMG++T ISS
Sbjct: 65  EGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGVYTHISS 124

Query: 128 YFPQ 129
           +FPQ
Sbjct: 125 FFPQ 128

BLAST of HG10010589 vs. ExPASy TrEMBL
Match: A0A6J1I7S4 (uncharacterized protein LOC111470385 OS=Cucurbita maxima OX=3661 GN=LOC111470385 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 0

Query: 1   MLPTFESEDEEDVGEVDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLI 60
           ++PT   E + + G +DY  FVS D+  F+ +V  L +++   + +TNSQIK  V    +
Sbjct: 117 LIPTSPPERDINEGAIDYASFVSFDLFHFRRLVTGLENNEHAYLTITNSQIKLWVEDLEV 176

Query: 61  TLTTVRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLH 120
            LTT R ECIIGG A G+E ++++   P +FF +F SER+W FKS D   + L APMGL+
Sbjct: 177 VLTTQRNECIIGGFAAGDEFESAMCLCPWEFFYNFTSERLWLFKSYDPKGMTLIAPMGLY 236

Query: 121 TRISSYFPQ 129
             ISSYFP+
Sbjct: 237 VHISSYFPE 245

BLAST of HG10010589 vs. ExPASy TrEMBL
Match: A0A0A0LJU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 58/125 (46.40%), Postives = 89/125 (71.20%), Query Frame = 0

Query: 8   EDEEDVGEVDY-TYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKF--SVGWRLITLTT 67
           E+  +VG+VDY ++FVS+ +E+F+ +V+++ + D V V +T+SQIKF   V     + TT
Sbjct: 5   EEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWETSFTT 64

Query: 68  VRKECIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLHTRIS 127
              +CIIGGI  GEEI+  I+  P++F+ +F S+RVWFF S D + ++L APMG++T IS
Sbjct: 65  QEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHIS 124

Query: 128 SYFPQ 129
           S+FPQ
Sbjct: 125 SFFPQ 129

BLAST of HG10010589 vs. ExPASy TrEMBL
Match: A0A6J1H641 (uncharacterized protein LOC111460364 OS=Cucurbita moschata OX=3662 GN=LOC111460364 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.4e-20
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 0

Query: 9   DEEDVGEVDYTYFVSIDIEDFKGIVEELGDDDEVSVVLTNSQIKFSVGWRLITLTTVRKE 68
           DEE + +VDY+ F SID E FK +V  +G  ++V+  LT S+IKF        LT   ++
Sbjct: 126 DEELIAKVDYSSFFSIDSEQFKLLVIWIG-ANKVTATLTRSRIKFINPSGEFVLTQQERK 185

Query: 69  CIIGGIAVGEEIQTSINFDPIDFFNSFKSERVWFFKSND-HDIMLTAPMGLHTRISSYFP 128
           CIIGGI  G+EI+ SI   PI+FFNSF S+R+WFFK+ D +  ++ +PMGLH  I SYFP
Sbjct: 186 CIIGGIREGDEIRFSITLLPIEFFNSFTSKRMWFFKTYDSNGTLIISPMGLHAEIWSYFP 245

Query: 129 QRL 131
            RL
Sbjct: 246 GRL 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022928046.12.8e-2145.74uncharacterized protein LOC111434948 [Cucurbita moschata][more]
XP_023547372.13.7e-2151.22uncharacterized protein LOC111806340 [Cucurbita pepo subsp. pepo][more]
KAE8651933.11.1e-2045.45hypothetical protein Csa_006731 [Cucumis sativus][more]
XP_031737287.11.1e-2045.45uncharacterized protein LOC116402216 [Cucumis sativus][more]
XP_031737417.12.4e-2045.97uncharacterized protein LOC116402255 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EJ671.4e-2145.74uncharacterized protein LOC111434948 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A0A0LMQ71.2e-2045.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1[more]
A0A6J1I7S42.6e-2044.19uncharacterized protein LOC111470385 OS=Cucurbita maxima OX=3661 GN=LOC111470385... [more]
A0A0A0LJU42.6e-2046.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1[more]
A0A6J1H6414.4e-2049.59uncharacterized protein LOC111460364 OS=Cucurbita moschata OX=3662 GN=LOC1114603... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010589.1HG10010589.1mRNA