HG10010474 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010474
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr06: 22543247 .. 22543576 (-)
RNA-Seq Expression	HG10010474
Synteny	HG10010474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTGATAACTTTAGTCCTCTTGTGGAGGCAATCTCTCAATTATCTCAAGTTTTTAAGGAAGGCGATGTGAGATTCATACCCTCAGTGTTATCCATAATTGCATCAAACCCTTCCATTGGCTTCATTATAACATTACATATTAAAGATCAATACTTCACTGAATTTACAATCAATCAGAATCGCAGTTGGAGAATTTCCCTTCAATCCCTCCACCAAACTATGTTTGCTGCAAGAAATTCTTCAAAAATGATCATCCGACTTCCCCCCATAGCAACAACAACCATCAACCCCAAATTGACTCTTACATTTTCCTCTTCAAGTTAA

mRNA sequence

ATGAAGGTTGATAACTTTAGTCCTCTTGTGGAGGCAATCTCTCAATTATCTCAAGTTTTTAAGGAAGGCGATGTGAGATTCATACCCTCAGTGTTATCCATAATTGCATCAAACCCTTCCATTGGCTTCATTATAACATTACATATTAAAGATCAATACTTCACTGAATTTACAATCAATCAGAATCGCAGTTGGAGAATTTCCCTTCAATCCCTCCACCAAACTATGTTTGCTGCAAGAAATTCTTCAAAAATGATCATCCGACTTCCCCCCATAGCAACAACAACCATCAACCCCAAATTGACTCTTACATTTTCCTCTTCAAGTTAA

Coding sequence (CDS)

ATGAAGGTTGATAACTTTAGTCCTCTTGTGGAGGCAATCTCTCAATTATCTCAAGTTTTTAAGGAAGGCGATGTGAGATTCATACCCTCAGTGTTATCCATAATTGCATCAAACCCTTCCATTGGCTTCATTATAACATTACATATTAAAGATCAATACTTCACTGAATTTACAATCAATCAGAATCGCAGTTGGAGAATTTCCCTTCAATCCCTCCACCAAACTATGTTTGCTGCAAGAAATTCTTCAAAAATGATCATCCGACTTCCCCCCATAGCAACAACAACCATCAACCCCAAATTGACTCTTACATTTTCCTCTTCAAGTTAA

Protein sequence

MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTINQNRSWRISLQSLHQTMFAARNSSKMIIRLPPIATTTINPKLTLTFSSSS

Homology

[Close]

BLAST of HG10010474 vs. NCBI nr
Match: KGN45636.1 (hypothetical protein Csa_004830 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPS-IGFIITLHIKDQYFTEFTI 60
           MKVD  +PLV+A+  LSQVF E DV F P+++SI ASNPS + F ITLHIK Q+FTE++I
Sbjct: 1   MKVDKLTPLVDAMCLLSQVFNEADVIFAPTLISITASNPSFVAFTITLHIKKQWFTEYSI 60

Query: 61  NQNRSWRISLQSLHQTMFAARNSSKMIIRLPPIATTTINPKLTLTFSSSS 110
           +++RSWRISL SL Q M+A RNSS+M IRLPPI++T  +  + L FSSSS
Sbjct: 61  HRHRSWRISLHSLLQAMYAGRNSSRMTIRLPPISSTN-SSAMVLKFSSSS 109

[Close]

BLAST of HG10010474 vs. NCBI nr
Match: XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          ++++ F PL++A S L+QV K+ DV+F P +L II SN S  F+ TL +  + FT F+++
Sbjct: 4  VRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVD 63

Query: 61 QNRSWRISLQSLHQTMFAARNSSKMIIRL 90
           N+S ++SLQ  H  M    + S M I L
Sbjct: 64 HNKSSKVSLQPFHDAMLDGGSFSSMTIHL 92

[Close]

BLAST of HG10010474 vs. NCBI nr
Match: KAG7013856.1 (hypothetical protein SDJN02_24025, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
           +++DNF P +EAI Q+ Q+ K  D++  P   S   S+P+ GF + LHI  ++F  ++++
Sbjct: 4   IRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVD 63

Query: 61  QNRSWRISLQSLHQTMFAARNSSKMIIRLPPIATTTINPKLTLTFSSS 109
           ++  WRISL S    MF AR   + +  +  I    +N +LTL FS+S
Sbjct: 64  KHHRWRISLVSFQDAMFIAR--KRCLASMNLIFLQNMN-QLTLIFSTS 108

[Close]

BLAST of HG10010474 vs. NCBI nr
Match: TYK02993.1 (uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          ++++ F PL++A S L+QV K+ DV+F P +L II SN S  F+ TL +  + FT F+++
Sbjct: 4  VRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVD 63

Query: 61 QNRSWRISLQSLHQTM 77
           N+S ++SLQ  H  M
Sbjct: 64 HNKSSKVSLQPFHDAM 79

[Close]

BLAST of HG10010474 vs. NCBI nr
Match: XP_023000630.1 (uncharacterized protein LOC111494874 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          +++ NF PLV+  S+L+Q+ +E D+ F P  L +  S PS  FI TL I  Q FT +++N
Sbjct: 7  VRLKNFRPLVDGTSRLAQIARESDIIFTPLSLKLTTSRPSPRFIATLQIFHQCFTVYSVN 66

Query: 61 QNRSWRISLQSLHQTMFAARNSSKMIIRL 90
           +   RISL+SLH  +    +SS M I L
Sbjct: 67 IDHCSRISLESLHDALLDCGSSSAMTIHL 95

[Close]

BLAST of HG10010474 vs. ExPASy TrEMBL
Match: A0A0A0KCX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002305 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.5e-25
Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPS-IGFIITLHIKDQYFTEFTI 60
           MKVD  +PLV+A+  LSQVF E DV F P+++SI ASNPS + F ITLHIK Q+FTE++I
Sbjct: 1   MKVDKLTPLVDAMCLLSQVFNEADVIFAPTLISITASNPSFVAFTITLHIKKQWFTEYSI 60

Query: 61  NQNRSWRISLQSLHQTMFAARNSSKMIIRLPPIATTTINPKLTLTFSSSS 110
           +++RSWRISL SL Q M+A RNSS+M IRLPPI++T  +  + L FSSSS
Sbjct: 61  HRHRSWRISLHSLLQAMYAGRNSSRMTIRLPPISSTN-SSAMVLKFSSSS 109

[Close]

BLAST of HG10010474 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.7e-10
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          ++++ F PL++A S L+QV K+ DV+F P +L II SN S  F+ TL +  + FT F+++
Sbjct: 4  VRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVD 63

Query: 61 QNRSWRISLQSLHQTMFAARNSSKMIIRL 90
           N+S ++SLQ  H  M    + S M I L
Sbjct: 64 HNKSSKVSLQPFHDAMLDGGSFSSMTIHL 92

[Close]

BLAST of HG10010474 vs. ExPASy TrEMBL
Match: A0A5D3BTK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00820 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.5e-09
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          ++++ F PL++A S L+QV K+ DV+F P +L II SN S  F+ TL +  + FT F+++
Sbjct: 4  VRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSVD 63

Query: 61 QNRSWRISLQSLHQTM 77
           N+S ++SLQ  H  M
Sbjct: 64 HNKSSKVSLQPFHDAM 79

[Close]

BLAST of HG10010474 vs. ExPASy TrEMBL
Match: A0A6J1KIW5 (uncharacterized protein LOC111494874 OS=Cucurbita maxima OX=3661 GN=LOC111494874 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          +++ NF PLV+  S+L+Q+ +E D+ F P  L +  S PS  FI TL I  Q FT +++N
Sbjct: 7  VRLKNFRPLVDGTSRLAQIARESDIIFTPLSLKLTTSRPSPRFIATLQIFHQCFTVYSVN 66

Query: 61 QNRSWRISLQSLHQTMFAARNSSKMIIRL 90
           +   RISL+SLH  +    +SS M I L
Sbjct: 67 IDHCSRISLESLHDALLDCGSSSAMTIHL 95

[Close]

BLAST of HG10010474 vs. ExPASy TrEMBL
Match: A0A6J1HGU2 (uncharacterized protein LOC111464209 OS=Cucurbita moschata OX=3662 GN=LOC111464209 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 1  MKVDNFSPLVEAISQLSQVFKEGDVRFIPSVLSIIASNPSIGFIITLHIKDQYFTEFTIN 60
          ++V NF PLV+  S+L+Q+ +E D+ F P  L +  S PS  FI  L I  Q FT +++N
Sbjct: 7  VRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQIFHQCFTVYSVN 66

Query: 61 QNRSWRISLQSLHQTMFAARNSSKMIIRL 90
           +   RISL+SLH  +    +SS M I L
Sbjct: 67 IDHRSRISLESLHDALLDCGSSSSMTIHL 95

The following BLAST results are available for this feature:

BLAST of HG10010474 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45636.1	1.3e-24	60.91	hypothetical protein Csa_004830 [Cucumis sativus]	[more]
XP_008458682.1	1.6e-09	40.45	PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]	[more]
KAG7013856.1	1.3e-08	36.11	hypothetical protein SDJN02_24025, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK02993.1	1.8e-08	42.11	uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa]	[more]
XP_023000630.1	2.3e-08	41.57	uncharacterized protein LOC111494874 [Cucurbita maxima]	[more]

BLAST of HG10010474 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCX9	6.5e-25	60.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002305 PE=4 SV=1	[more]
A0A1S3C8J1	7.7e-10	40.45	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A5D3BTK3	8.5e-09	42.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1KIW5	1.1e-08	41.57	uncharacterized protein LOC111494874 OS=Cucurbita maxima OX=3661 GN=LOC111494874...	[more]
A0A6J1HGU2	2.5e-08	41.57	uncharacterized protein LOC111464209 OS=Cucurbita moschata OX=3662 GN=LOC1114642...	[more]

BLAST of HG10010474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..109 e-value: 5.5E-10 score: 40.9
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 4..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010474.1	HG10010474.1	mRNA