HG10010473 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010473
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr06: 22539224 .. 22539547 (+)
RNA-Seq Expression	HG10010473
Synteny	HG10010473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTATCAAGGTTGACAGACTTGCTCCTTTTTTGAATGCAACCTCCCTATTCACTCAAATTACTGACGAAGTCTGCCTAAAATTCACGCCGTCGATGTTCTCGATAATTGTTCGGTGCACGTTCCCTCCGTTAAACGCAGAGTTGTTTATGCCACATCCATTATTCGCCGAGTATTCGGTTGGTCGGAATCACATTTCAAAGGTTTCCCTCAACTCCTTCCACAATGCTTTGTTGGATGGCCAAAGCTATGGTTCAATGACCATCCATCTTCAGGAACCCCAAAATAACATACTCCTTACATTTGTACCTTTAAGTTAG

mRNA sequence

ATGTTCTCTATCAAGGTTGACAGACTTGCTCCTTTTTTGAATGCAACCTCCCTATTCACTCAAATTACTGACGAAGTCTGCCTAAAATTCACGCCGTCGATGTTCTCGATAATTGTTCGGTGCACGTTCCCTCCGTTAAACGCAGAGTTGTTTATGCCACATCCATTATTCGCCGAGTATTCGGTTGGTCGGAATCACATTTCAAAGGTTTCCCTCAACTCCTTCCACAATGCTTTGTTGGATGGCCAAAGCTATGGTTCAATGACCATCCATCTTCAGGAACCCCAAAATAACATACTCCTTACATTTGTACCTTTAAGTTAG

Coding sequence (CDS)

ATGTTCTCTATCAAGGTTGACAGACTTGCTCCTTTTTTGAATGCAACCTCCCTATTCACTCAAATTACTGACGAAGTCTGCCTAAAATTCACGCCGTCGATGTTCTCGATAATTGTTCGGTGCACGTTCCCTCCGTTAAACGCAGAGTTGTTTATGCCACATCCATTATTCGCCGAGTATTCGGTTGGTCGGAATCACATTTCAAAGGTTTCCCTCAACTCCTTCCACAATGCTTTGTTGGATGGCCAAAGCTATGGTTCAATGACCATCCATCTTCAGGAACCCCAAAATAACATACTCCTTACATTTGTACCTTTAAGTTAG

Protein sequence

MFSIKVDRLAPFLNATSLFTQITDEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAEYSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTFVPLS

Homology

[Close]

BLAST of HG10010473 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQ-ITDEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MFSIKVD L PFL+ATSLFT+ I DE+CLKF+PS FS+I R   P   A LFMPHPLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTFVP 106
           YSV RNHIS++SL  F NALL+GQSY SM+IHL+EPQN IL  F P
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEP 106

[Close]

BLAST of HG10010473 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-25
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQIT-DEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MFSIK+D + PFL+AT LF ++T DE+CLKF PS  SIIVR   P     + +P PLF E
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTFVPLS 108
           YSV RNHIS++SL SF++ALL+ Q++ ++ IHLQE QN ILLTF P S
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSS 108

[Close]

BLAST of HG10010473 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 64/106 (60.38%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQI-TDEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MFSIK+D+L P L+A SLFT I  D++CLKF+ S FSII R   P   A LF+P PLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTFVP 106
           Y VGR+HI +VSL S H AL  GQ+Y S+ IHLQE QN I L F P
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEP 106

[Close]

BLAST of HG10010473 vs. NCBI nr
Match: XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQIT-DEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MF +K+    P L+ATS F QI+ D+  +KFTPS F II     P   A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTF 104
           +SV  +H SKVSL SFH+A+LDG S+ SMTIHL +  N I+L F
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRF 104

[Close]

BLAST of HG10010473 vs. NCBI nr
Match: KAE8646596.1 (hypothetical protein Csa_004903, partial [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQIT-DEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MF +K+    P L+ATS F QI+ D+  +KFTPS F II     P   A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTF 104
           +SV  +H SKVSL SFH+A+LDG S+ SMTIHL +  N I+L F
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRF 104

[Close]

BLAST of HG10010473 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQ-ITDEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MFSIKVD L PFL+ATSLFT+ I DE+CLKF+PS FS+I R   P   A LFMPHPLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTFVP 106
           YSV RNHIS++SL  F NALL+GQSY SM+IHL+EPQN IL  F P
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEP 106

[Close]

BLAST of HG10010473 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 64/106 (60.38%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQI-TDEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MFSIK+D+L P L+A SLFT I  D++CLKF+ S FSII R   P   A LF+P PLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTFVP 106
           Y VGR+HI +VSL S H AL  GQ+Y S+ IHLQE QN I L F P
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEP 106

[Close]

BLAST of HG10010473 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQIT-DEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MF +K+    P L+ATS F QI+ D+  +KFTPS F II     P   A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTF 104
           +SV  +H SKVSL SFH+A+LDG S+ SMTIHL +  N I+L F
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRF 104

[Close]

BLAST of HG10010473 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQITDEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAEY 60
           MF +++++  P ++ATSL  Q+  +  +KFTP M  IIV    P   A L +   LF  +
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 61  SVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTF 104
           SV  N  SKVSL  FH+A+LDG S+ SMTIHL +  N ++L F
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRF 103

[Close]

BLAST of HG10010473 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.6e-14
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 1   MFSIKVDRLAPFLNATSLFTQIT-DEVCLKFTPSMFSIIVRCTFPPLNAELFMPHPLFAE 60
           MF +K+    P L+ATS   QI+ D   LKFTPS F II     P   A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVGRNHISKVSLNSFHNALLDGQSYGSMTIHLQEPQNNILLTF 104
           +SV  +H SKVSL SFH+A+LDG S+ SMTIHL +  N ++L F
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRF 104

The following BLAST results are available for this feature:

BLAST of HG10010473 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61523.1	2.5e-31	68.87	hypothetical protein Csa_006491 [Cucumis sativus]	[more]
XP_031736681.1	7.7e-25	58.33	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN45637.1	2.5e-23	60.38	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
XP_031743987.1	2.1e-14	48.08	uncharacterized protein LOC116404759 [Cucumis sativus]	[more]
KAE8646596.1	2.1e-14	48.08	hypothetical protein Csa_004903, partial [Cucumis sativus]	[more]

BLAST of HG10010473 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE0	1.2e-31	68.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A0A0KB76	1.2e-23	60.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A0A0K902	1.0e-14	48.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A1S3C8J1	2.3e-14	43.69	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A5D3DZ07	6.6e-14	47.12	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of HG10010473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..106 e-value: 1.2E-9 score: 39.8
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010473.1	HG10010473.1	mRNA