HG10010470 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010470
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr06: 22514114 .. 22514688 (+)
RNA-Seq Expression	HG10010470
Synteny	HG10010470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTAATCAAGGTCAATAATCTTGCTTCTTTTTTGAACGCAACCTCTCTATTAACTCAACTTGCTAATGATCAAGTCTGCCTGAAATTCTCACCGTCGACGTTCTCGATAATTGCTTGCTTCCCGTCGCCTCCCTTCGTTTCAATGATACTTATGCGTCGATCGTTTTTCTCCAGCTATTTCGTCGATCGGAATCATATTTTAAAGATTTCCCTCCAATCCCTCCACAATGCTTTGTTGCAAGGCCAAAGGTTTTCGTCAATGACTCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGTTAGTTTCCTTCCTTCTTGAAAAATGAATCTTTATTTGTTGTTTTTCTTGATTAATCTTTCTTTTGTTCATTTTGATATCACCTTTTTTAGGGCATTTGGCACCATTATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAAATTTCTGTATTGGTTCAGAAATGTTTAAACGTATTATTACAACATTTTCTGTCAATAATGAAGTTAAAAGTAATTAA

mRNA sequence

ATGTTCTTAATCAAGGTCAATAATCTTGCTTCTTTTTTGAACGCAACCTCTCTATTAACTCAACTTGCTAATGATCAAGTCTGCCTGAAATTCTCACCGTCGACGTTCTCGATAATTGCTTGCTTCCCGTCGCCTCCCTTCGTTTCAATGATACTTATGCGTCGATCGTTTTTCTCCAGCTATTTCGTCGATCGGAATCATATTTTAAAGATTTCCCTCCAATCCCTCCACAATGCTTTGTTGCAAGGCCAAAGGTTTTCGTCAATGACTCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGGCATTTGGCACCATTATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAAATTTCTGTATTGGTTCAGAAATGTTTAAACGTATTATTACAACATTTTCTGTCAATAATGAAGTTAAAAGTAATTAA

Coding sequence (CDS)

ATGTTCTTAATCAAGGTCAATAATCTTGCTTCTTTTTTGAACGCAACCTCTCTATTAACTCAACTTGCTAATGATCAAGTCTGCCTGAAATTCTCACCGTCGACGTTCTCGATAATTGCTTGCTTCCCGTCGCCTCCCTTCGTTTCAATGATACTTATGCGTCGATCGTTTTTCTCCAGCTATTTCGTCGATCGGAATCATATTTTAAAGATTTCCCTCCAATCCCTCCACAATGCTTTGTTGCAAGGCCAAAGGTTTTCGTCAATGACTCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGGCATTTGGCACCATTATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAAATTTCTGTATTGGTTCAGAAATGTTTAAACGTATTATTACAACATTTTCTGTCAATAATGAAGTTAAAAGTAATTAA

Protein sequence

MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQINPKNFCIGSEMFKRIITTFSVNNEVKSN

Homology

[Close]

BLAST of HG10010470 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-29
Identity = 79/163 (48.47%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MF IK++ L   L+A SL T + ND++CLKFS STFSIIA +  P F +M+ +    F+ 
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT 120
           YFV R+HIL++SL SLH AL +GQ +SS+ +HL E  N I L FE SRH +P+ +  ++ 
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRH-SPVPMRRKMR 120

Query: 121 I-LPMEDWSPGQI--NPKNFCIGSEMFKRIITTFSVNNEVKSN 161
             +PMEDWS G+I  + K+F I S++F+ IITTF   NEV ++
Sbjct: 121 FEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTS 162

[Close]

BLAST of HG10010470 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-23
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MF IK++++  FL+AT L  +L +D++CLKF PST SII  +  P F   + + +  F  
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT 120
           Y VDRNHI +ISL S ++ALL+ Q F+++ +HL E  N+ILL FE S   + L L+ ELT
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSP-STLPLNRELT 120

Query: 121 -ILPMEDWSPGQIN--PKNFCIGSEMFKRIITTFSVNNEVKS 160
            ++PMEDWS  Q+N   K F I S++F  II  FS   E  +
Sbjct: 121 FVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANT 161

[Close]

BLAST of HG10010470 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MF IKV+NL  FL+ATSL T+  ND++CLKFSPSTFS+IA +  P F +M+ M    F  
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETS 108
           Y VDRNHI +ISL+   NALL+GQ +SSM++HL EP N IL +FE S
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of HG10010470 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-20
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F++
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHEL 120
           + VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N+++LRF+T S  + P  LHHEL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQP--LHHEL 120

Query: 121 TILP--MEDWSPGQ---INPKNFCIGSEMFKRII 149
           T+ P   ED   GQ      K F + S+  +RII
Sbjct: 121 TLSPPQAEDNQIGQHELDERKYFIVKSKALRRII 152

[Close]

BLAST of HG10010470 vs. NCBI nr
Match: KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-20
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F++
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHEL 120
           + VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N+++LRF+T S  + P  LHHEL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQP--LHHEL 120

Query: 121 TILP--MEDWSPGQ---INPKNFCIGSEMFKRII 149
           T+ P   ED   GQ      K F + S+  +RII
Sbjct: 121 TLSPPQAEDNQIGQHELDERKYFIVKSKALRRII 152

[Close]

BLAST of HG10010470 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 79/163 (48.47%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MF IK++ L   L+A SL T + ND++CLKFS STFSIIA +  P F +M+ +    F+ 
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT 120
           YFV R+HIL++SL SLH AL +GQ +SS+ +HL E  N I L FE SRH +P+ +  ++ 
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRH-SPVPMRRKMR 120

Query: 121 I-LPMEDWSPGQI--NPKNFCIGSEMFKRIITTFSVNNEVKSN 161
             +PMEDWS G+I  + K+F I S++F+ IITTF   NEV ++
Sbjct: 121 FEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTS 162

[Close]

BLAST of HG10010470 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MF IKV+NL  FL+ATSL T+  ND++CLKFSPSTFS+IA +  P F +M+ M    F  
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETS 108
           Y VDRNHI +ISL+   NALL+GQ +SSM++HL EP N IL +FE S
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of HG10010470 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F++
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHEL 120
           + VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N+++LRF+T S  + P  LHHEL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQP--LHHEL 120

Query: 121 TILP--MEDWSPGQ---INPKNFCIGSEMFKRII 149
           T+ P   ED   GQ      K F + S+  +RII
Sbjct: 121 TLSPPQAEDNQIGQHELDERKYFIVKSKALRRII 152

[Close]

BLAST of HG10010470 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F++
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHEL 120
           + VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N+++LRF+T S  + P  LHHEL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQP--LHHEL 120

Query: 121 TILP--MEDWSPGQ---INPKNFCIGSEMFKRII 149
           T+ P   ED   GQ      K F + S+  +RII
Sbjct: 121 TLSPPQAEDNQIGQHELDERKYFIVKSKALRRII 152

[Close]

BLAST of HG10010470 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 1   MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSS 60
           MFL+K+ N    L+ATS   Q++ D   +KF+PS F II+   SP F++ + +   +F+S
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHEL 120
           + VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N+I+LRF+T S  + P  LHHEL
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQP--LHHEL 120

Query: 121 TILP--MEDWSPGQ---INPKNFCIGSEMFKRIITTFSVNNEVKSN 161
            + P   ED   GQ      K F + S+  +RII    +     SN
Sbjct: 121 ALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 164

The following BLAST results are available for this feature:

BLAST of HG10010470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45637.1	2.7e-29	48.47	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
XP_031736681.1	1.7e-23	45.06	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN61523.1	3.7e-23	57.94	hypothetical protein Csa_006491 [Cucumis sativus]	[more]
XP_008464344.1	1.0e-20	43.51	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
KAA0045262.1	1.0e-20	43.51	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286...	[more]

BLAST of HG10010470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB76	1.3e-29	48.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A0A0LIE0	1.8e-23	57.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A5D3DZ07	4.9e-21	43.51	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CL88	4.9e-21	43.51	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
A0A0A0K902	2.4e-20	40.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]

BLAST of HG10010470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..158 e-value: 6.6E-12 score: 47.2
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010470.1	HG10010470.1	mRNA