HG10010438 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010438
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	nuclear export mediator factor Nemf
Location	Chr06: 22219164 .. 22220259 (+)
RNA-Seq Expression	HG10010438
Synteny	HG10010438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGATGATATTCATGAAATAGGTGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTACGCTGTGCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCACGTTAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGGTAAACTAGCTATAGTATTCATCATTAATACCATATTTCTAGATCAACAAAACCTTTAGGTTAAATTACAAGTTTAGTTATTGAAGTTTTAAGTTTATGTCTATTTGGTCCCTTAACTTTAAAAACTGTTTAATAAATCTTTAAGGCCCCATTTGGTAGCTATTTGGTTTTTTAGGTTTAGAAATTGTGTTTTTTTTTTTCCTCACAATTTCTTACTTATAGTTTTCATATTTTTTATCTAAACATTTGAATTCTTAGTCAATTTTCAAAAACAAGAACAAGCTTTTGAAATTTTGGCTTTGATTTTGAAAACACTCATAAGATGACAGACAACAAAACATACAAACCAATAGATGGAAGTTGTATTTATAGACTTAATTTTCAAAAGGAAAAAACTAAAAAACCAAATGGTTACTAAATAGGGCTTAAATTTTCAATGTTGTGTCTAATGAATTCCTCAATTTTAAAAGTGTTAATAGGTCACTGAACTCTTGACGTATTCAGAAATTTTAGAAGTTATATGGTTGGAGACAAAATTGAAAGTCGAAGGTCTGGATTTATTACTTTTTATGGTTGAAGAATCAAATAGAGACAAATATGAAAGTTCAAAAATTAAACATGTAATTTAACTGAACCTTTTATCAGCCAATGCATTCCATGTTCAAGTGATTCCATTCCATAACCTAGCTCTTTGTCCCCTTGTTTCTAGCTGCAAAAACTGCCTTGAACCTGTTCACGCACATGCCTGAAGCAACAATAAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGCTCGTCGCCGCCATCATTGGGAATGCCCGGGTTACGGCAGTCGGTCTCACTCAGTTAAAACAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG

mRNA sequence

ATGGAAGAGGATGATATTCATGAAATAGGTGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTACGCTGTGCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCACGTTAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACGCACATGCCTGAAGCAACAATAAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGCTCGTCGCCGCCATCATTGGGAATGCCCGGGTTACGGCAGTCGGTCTCACTCAGTTAAAACAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG

Coding sequence (CDS)

ATGGAAGAGGATGATATTCATGAAATAGGTGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTACGCTGTGCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCACGTTAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACGCACATGCCTGAAGCAACAATAAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGCTCGTCGCCGCCATCATTGGGAATGCCCGGGTTACGGCAGTCGGTCTCACTCAGTTAAAACAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG

Protein sequence

MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKGKKSSKQGS

Homology

[Close]

BLAST of HG10010438 vs. NCBI nr
Match: XP_038907111.1 (nuclear export mediator factor Nemf [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 125/128 (97.66%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEE+REKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 991  MEEDDIHEIGEEQREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1050

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1051 KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1110

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1111 KKSSKQGS 1118

[Close]

BLAST of HG10010438 vs. NCBI nr
Match: XP_008458314.1 (PREDICTED: nuclear export mediator factor Nemf [Cucumis melo] >TYK02971.1 nuclear export mediator factor Nemf [Cucumis melo var. makuwa])

HSP 1 Score: 241.9 bits (616), Expect = 3.0e-60
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 992  MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1051

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1052 KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1111

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1112 KKSSKQGS 1119

[Close]

BLAST of HG10010438 vs. NCBI nr
Match: XP_004138531.1 (nuclear export mediator factor Nemf [Cucumis sativus] >KGN45604.2 hypothetical protein Csa_005434 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 3.0e-60
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 992  MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1051

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1052 KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1111

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1112 KKSSKQGS 1119

[Close]

BLAST of HG10010438 vs. NCBI nr
Match: XP_022138405.1 (nuclear export mediator factor Nemf [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 4.0e-60
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPY+AVQSYKYHVKIVPG L
Sbjct: 996  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYSAVQSYKYHVKIVPGPL 1055

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTA+NLFTHMPEAT REKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1056 KKGKAAKTAMNLFTHMPEATNREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1115

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1116 KKSSKQGS 1123

[Close]

BLAST of HG10010438 vs. NCBI nr
Match: XP_023547964.1 (nuclear export mediator factor Nemf [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 118/128 (92.19%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGE+EREKLNDVDYLTG+PLPTDI+LYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 995  MEEDDIHEIGEDEREKLNDVDYLTGHPLPTDIILYAVPVCGPYNAVQSYKYHVKIVPGPL 1054

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTA+NLF HMPEAT REKELIKACTDPELV+AIIGNARVTA GLTQLKQKQKKG
Sbjct: 1055 KKGKAAKTAMNLFAHMPEATTREKELIKACTDPELVSAIIGNARVTAAGLTQLKQKQKKG 1114

Query: 121  KKSSKQGS 129
            KKSSKQG+
Sbjct: 1115 KKSSKQGA 1122

[Close]

BLAST of HG10010438 vs. ExPASy Swiss-Prot
Match: O60524 (Nuclear export mediator factor NEMF OS=Homo sapiens OX=9606 GN=NEMF PE=1 SV=4)

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-23
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 2    EEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLK 61
            EE D+ + G EE    N  D LTG P P D+LL+A+P+C PY  + +YKY VK+ PG  K
Sbjct: 966  EEQDLDQQGNEE----NLFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQK 1025

Query: 62   KGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQK 117
            KGKAAKTALN F H  EAT REK+L ++  D +L   I G  +V+A  L  +K+K
Sbjct: 1026 KGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK 1076

[Close]

BLAST of HG10010438 vs. ExPASy Swiss-Prot
Match: Q8CCP0 (Nuclear export mediator factor Nemf OS=Mus musculus OX=10090 GN=Nemf PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-22
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 2    EEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLK 61
            EE D+ + G EE    N  D LTG P P D+L++A+P+C PY  + +YKY VK+ PG  K
Sbjct: 954  EEHDLDQQGNEE----NLFDSLTGQPHPEDVLMFAIPICAPYTIMTNYKYKVKLTPGVQK 1013

Query: 62   KGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQK 117
            KGKAAKTALN F H  EAT REK+L ++  D +L   I G  +V+A  L  +K+K
Sbjct: 1014 KGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK 1064

[Close]

BLAST of HG10010438 vs. ExPASy Swiss-Prot
Match: Q9VBX1 (Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster OX=7227 GN=Clbn PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-15
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 19  DVDY---LTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTH 78
           DVD    LTG P   D LL+A+PV  PY A+Q+YK+ VK+ PG+ K+GKAAK ALN+F  
Sbjct: 893 DVDVLNSLTGQPHEGDELLFAIPVVAPYQALQNYKFKVKLTPGTGKRGKAAKLALNIFAK 952

Query: 79  MPEATIREKELIKACTDPELVAAIIGNARVTA 108
               + REK+L+K+  +  L   I G  +++A
Sbjct: 953 EKSCSAREKDLLKSIKEESLARNIPGKVKLSA 984

[Close]

BLAST of HG10010438 vs. ExPASy Swiss-Prot
Match: Q9USN8 (Ribosome quality control complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr1 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 20   VDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEA 79
            +D LT NP   D ++ AVP   PYNA+  +   VK++PG+ K GKAA+ ++  F      
Sbjct: 922  IDSLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLPK 981

Query: 80   TIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKK 120
            + +E   ++   D E+VA I  +      G +   +K KK
Sbjct: 982  SSKEAAYLENLKDGEIVAPISVSRLKMVFGSSGNTKKSKK 1021

[Close]

BLAST of HG10010438 vs. ExPASy TrEMBL
Match: A0A5D3BTB6 (Nuclear export mediator factor Nemf OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00560 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 992  MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1051

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1052 KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1111

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1112 KKSSKQGS 1119

[Close]

BLAST of HG10010438 vs. ExPASy TrEMBL
Match: A0A1S3C743 (nuclear export mediator factor Nemf OS=Cucumis melo OX=3656 GN=LOC103497766 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPL TDILLYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 992  MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1051

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTALNLFTHMPEAT REKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1052 KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1111

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1112 KKSSKQGS 1119

[Close]

BLAST of HG10010438 vs. ExPASy TrEMBL
Match: A0A6J1C9D2 (nuclear export mediator factor Nemf OS=Momordica charantia OX=3673 GN=LOC111009587 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPY+AVQSYKYHVKIVPG L
Sbjct: 996  MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYSAVQSYKYHVKIVPGPL 1055

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTA+NLFTHMPEAT REKELIKACTDPELVAAIIGNARVTA GLTQLKQKQKKG
Sbjct: 1056 KKGKAAKTAMNLFTHMPEATNREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKG 1115

Query: 121  KKSSKQGS 129
            KKSSKQGS
Sbjct: 1116 KKSSKQGS 1123

[Close]

BLAST of HG10010438 vs. ExPASy TrEMBL
Match: A0A6J1KW00 (nuclear export mediator factor Nemf OS=Cucurbita maxima OX=3661 GN=LOC111499204 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 118/128 (92.19%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGE+EREKLNDVDYLTG+PLPTDI+LYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 995  MEEDDIHEIGEDEREKLNDVDYLTGHPLPTDIILYAVPVCGPYNAVQSYKYHVKIVPGPL 1054

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTA+NLF HMPEAT REKELIKACTDPELV+AIIGNARVTA GLTQLKQKQKKG
Sbjct: 1055 KKGKAAKTAMNLFAHMPEATNREKELIKACTDPELVSAIIGNARVTAAGLTQLKQKQKKG 1114

Query: 121  KKSSKQGS 129
            KKSSKQG+
Sbjct: 1115 KKSSKQGA 1122

[Close]

BLAST of HG10010438 vs. ExPASy TrEMBL
Match: A0A6J1H2U9 (nuclear export mediator factor Nemf OS=Cucurbita moschata OX=3662 GN=LOC111459967 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 118/128 (92.19%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHEIGE+EREKLNDVDYLTG+PLPTDI+LYAVPVCGPYNAVQSYKYHVKIVPG L
Sbjct: 995  MEEDDIHEIGEDEREKLNDVDYLTGHPLPTDIILYAVPVCGPYNAVQSYKYHVKIVPGPL 1054

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTA+NLF HMPEAT REKELIKACTDPELV+AIIGNARVTA GLTQLKQKQKKG
Sbjct: 1055 KKGKAAKTAMNLFAHMPEATNREKELIKACTDPELVSAIIGNARVTAAGLTQLKQKQKKG 1114

Query: 121  KKSSKQGS 129
            KKSSKQG+
Sbjct: 1115 KKSSKQGA 1122

[Close]

BLAST of HG10010438 vs. TAIR 10
Match: AT5G49930.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 217.6 bits (553), Expect = 5.7e-57
Identity = 104/126 (82.54%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSL 60
            MEEDDIHE+G+EE+EKL DVDYLTGNPLPTDILLYAVPVCGPYNA+QSYKY VK +PGS+
Sbjct: 952  MEEDDIHEVGDEEKEKLIDVDYLTGNPLPTDILLYAVPVCGPYNALQSYKYRVKAIPGSM 1011

Query: 61   KKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARVTAVGLTQLKQKQKKG 120
            KKGKAAKTA+NLFTHM EA++REKEL+KACTDPEL+AA++GN ++TA GLTQLKQKQKKG
Sbjct: 1012 KKGKAAKTAMNLFTHMSEASVREKELMKACTDPELMAALVGNVKITAAGLTQLKQKQKKG 1071

Query: 121  KKSSKQ 127
            KKS KQ
Sbjct: 1072 KKSGKQ 1077

The following BLAST results are available for this feature:

BLAST of HG10010438 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907111.1	2.1e-61	97.66	nuclear export mediator factor Nemf [Benincasa hispida]	[more]
XP_008458314.1	3.0e-60	96.88	PREDICTED: nuclear export mediator factor Nemf [Cucumis melo] >TYK02971.1 nuclea...	[more]
XP_004138531.1	3.0e-60	96.88	nuclear export mediator factor Nemf [Cucumis sativus] >KGN45604.2 hypothetical p...	[more]
XP_022138405.1	4.0e-60	96.09	nuclear export mediator factor Nemf [Momordica charantia]	[more]
XP_023547964.1	1.7e-58	92.19	nuclear export mediator factor Nemf [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10010438 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O60524	6.9e-23	49.57	Nuclear export mediator factor NEMF OS=Homo sapiens OX=9606 GN=NEMF PE=1 SV=4	[more]
Q8CCP0	2.0e-22	48.70	Nuclear export mediator factor Nemf OS=Mus musculus OX=10090 GN=Nemf PE=1 SV=2	[more]
Q9VBX1	6.9e-15	45.65	Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster OX=7227 G...	[more]
Q9USN8	2.4e-07	33.00	Ribosome quality control complex subunit 2 OS=Schizosaccharomyces pombe (strain ...	[more]

BLAST of HG10010438 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTB6	1.5e-60	96.88	Nuclear export mediator factor Nemf OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C743	1.5e-60	96.88	nuclear export mediator factor Nemf OS=Cucumis melo OX=3656 GN=LOC103497766 PE=3...	[more]
A0A6J1C9D2	1.9e-60	96.09	nuclear export mediator factor Nemf OS=Momordica charantia OX=3673 GN=LOC1110095...	[more]
A0A6J1KW00	1.4e-58	92.19	nuclear export mediator factor Nemf OS=Cucurbita maxima OX=3661 GN=LOC111499204 ...	[more]
A0A6J1H2U9	1.4e-58	92.19	nuclear export mediator factor Nemf OS=Cucurbita moschata OX=3662 GN=LOC11145996...	[more]

BLAST of HG10010438 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49930.1	5.7e-57	82.54	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021846	NFACT protein, C-terminal	PFAM	PF11923	NFACT-C	coord: 14..105 e-value: 1.6E-27 score: 95.5
None	No IPR available	PANTHER	PTHR15239	FAMILY NOT NAMED	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010438.1	HG10010438.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0072344	rescue of stalled ribosome
biological_process	GO:1990116	ribosome-associated ubiquitin-dependent protein catabolic process
cellular_component	GO:1990112	RQC complex
molecular_function	GO:0043023	ribosomal large subunit binding
molecular_function	GO:0000049	tRNA binding
molecular_function	GO:0008270	zinc ion binding