HG10010310 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010310
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLow-density receptor-like protein
LocationChr06: 20975583 .. 20975957 (-)
RNA-Seq ExpressionHG10010310
SyntenyHG10010310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCATCGACGGCAAGGATTACGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGTTTGTTAATTGAATGCTAAATTTGCATGTTTATGCTTGTCTGAGTTCTGAATGGAGTTTGAATTCTTCGTTCTGGACGCATTTCAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGGAAATGATGGAAAGAAGGCCGGATCGGTTGCTATTCGGAAGCTTCTTCATCAGGTTTTGTGA

mRNA sequence

ATGGCGTCATCGACGGCAAGGATTACGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGGAAATGATGGAAAGAAGGCCGGATCGGTTGCTATTCGGAAGCTTCTTCATCAGGTTTTGTGA

Coding sequence (CDS)

ATGGCGTCATCGACGGCAAGGATTACGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGGAAATGATGGAAAGAAGGCCGGATCGGTTGCTATTCGGAAGCTTCTTCATCAGGTTTTGTGA

Protein sequence

MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQVL
Homology
[Close]
BLAST of HG10010310 vs. NCBI nr
Match: XP_038875265.1 (uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTARITFRVIMVV LLLV FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQVL 96
          SVGWYHDESDSGVHDGNDGKKAGSVAIR+LLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQVL 95

[Close]
BLAST of HG10010310 vs. NCBI nr
Match: XP_038875268.1 (uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTARITFRVIMVV LLLV FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDGNDGKKAGSVAIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQL 94

[Close]
BLAST of HG10010310 vs. NCBI nr
Match: XP_008458514.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of HG10010310 vs. NCBI nr
Match: XP_011656653.1 (uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.0e-41
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDGNDGKKAGS AIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQM 94

[Close]
BLAST of HG10010310 vs. NCBI nr
Match: XP_008458516.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 5.2e-41
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]
BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A0A0KBE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQVL 96
          SVGWYHDESDSGVHDGNDGKKAGS AIR+LLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]
BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A1S3C994 (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A1S3C7I8 (uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]
BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A6J1EUV5 (uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGSVA R+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]
BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A6J1EWN5 (uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.1e-40
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGSVA R+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]
BLAST of HG10010310 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 2  ASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T RI FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGNDGKKAGSVAIRKLL 92
          VGWYHDESDSG  +G++ KK+G    R+LL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

The following BLAST results are available for this feature:
BLAST of HG10010310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875265.13.6e-4296.84uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida][more]
XP_038875268.12.3e-4195.74uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida][more]
XP_008458514.12.3e-4196.81PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
XP_011656653.14.0e-4195.74uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus][more]
XP_008458516.15.2e-4195.74PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo][more]
BLAST of HG10010310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10010310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE93.0e-4296.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1[more]
A0A1S3C9941.1e-4196.81uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C7I82.5e-4195.74uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1EUV54.8e-4090.43uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EWN58.1e-4090.43uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of HG10010310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G18850.11.4e-2865.56unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010310.1HG10010310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane