HG10010277 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010277
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 20589319 .. 20590247 (-)
RNA-Seq ExpressionHG10010277
SyntenyHG10010277
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTGGAGTAGAAAATGATGATTTGTTGTTTGCAGAGCTTACTAGAAGGATTTCGCTTCTCATTATGGACGACGATGAGCTTCCGATCGTTCATACGGTTTGTTTTACCTCCCTCGTTTACCTCTTTTGGTTATAAAGTTAGTACTTCGCTTTTAGAATTGTGTACTTGTTATTAGATTTGAATTTTTATGTTTGTGTTTGTTTATTGTTTGATAAGTTAGTTAGTGCTCTTTGTTTATGGTTACGAAACAGTTCTCAAAATTAAATATAATAAGTGCTAAACTAATATGAAACACGAACTTAAAAGTTTAGGGAGCAAGAATGTTTTAAAAAATTAATACTTAAATTGAATATTTACCATTACTAAAGTTTTAGATATGTTTGACCTATTAAAAACTATTTAAAATACAAATTTAATTAGACGAAAACGAAATGAGGTATTGGGGCTTGAGTTCAACTTAAGCCGAGATTTGATAAGTTTGCAATTTAGACAGAGGGTTTAACAAGACCAAGTTTGGGCAAGGTACAAGGTTACAAAGTTTAAGGTTTAGAAACAATGAGTTTCATGAGTTTGGATGGTGAGATACCCATGAAGTCAATGTCGGTTGTGCTTAAGAAGCTAATTCACGATTCAAAGGATTTATAATAATTTAGGGTTCAGACTTGTAATTCGACCTATTATTAATGTTTCAGGACTTAACTAGAACAGTAAACCAACTTCGACCCAGGCAATTACCATTACTGGTGGATTACGAGAACGATTTAGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCAACGCGGTTACCACCGCCTAAGAGGAAGCAAAGAAATGGCACCGGCTATAGAATCAAATCAGAAAACAAGAGGCTCAATCATCAACCCTCTTCAACTTATTATTGTAAGCCCAAGAAAGGCTGA

mRNA sequence

ATGGAAATTGGAGTAGAAAATGATGATTTGTTGTTTGCAGAGCTTACTAGAAGGATTTCGCTTCTCATTATGGACGACGATGAGCTTCCGATCGTTCATACGGACTTAACTAGAACAGTAAACCAACTTCGACCCAGGCAATTACCATTACTGGTGGATTACGAGAACGATTTAGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCAACGCGGTTACCACCGCCTAAGAGGAAGCAAAGAAATGGCACCGGCTATAGAATCAAATCAGAAAACAAGAGGCTCAATCATCAACCCTCTTCAACTTATTATTGTAAGCCCAAGAAAGGCTGA

Coding sequence (CDS)

ATGGAAATTGGAGTAGAAAATGATGATTTGTTGTTTGCAGAGCTTACTAGAAGGATTTCGCTTCTCATTATGGACGACGATGAGCTTCCGATCGTTCATACGGACTTAACTAGAACAGTAAACCAACTTCGACCCAGGCAATTACCATTACTGGTGGATTACGAGAACGATTTAGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCAACGCGGTTACCACCGCCTAAGAGGAAGCAAAGAAATGGCACCGGCTATAGAATCAAATCAGAAAACAAGAGGCTCAATCATCAACCCTCTTCAACTTATTATTGTAAGCCCAAGAAAGGCTGA

Protein sequence

MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVRESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKKG
Homology
BLAST of HG10010277 vs. NCBI nr
Match: XP_038875510.1 (uncharacterized protein LOC120067937 [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME+GVENDDLLFAELTRRISLLIMDDDELPIVHTD TRTV+QLRPRQ PL++DYEN  +R
Sbjct: 1   MEMGVENDDLLFAELTRRISLLIMDDDELPIVHTDFTRTVHQLRPRQFPLMMDYENGFIR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKKG 111
           ESKGTGVFIP RLPPPKRKQR+  GYRIK++NK L+HQPSS YY +PKKG
Sbjct: 61  ESKGTGVFIPARLPPPKRKQRSVAGYRIKTKNKSLDHQPSSMYYWEPKKG 110

BLAST of HG10010277 vs. NCBI nr
Match: XP_004149266.1 (uncharacterized protein LOC101220151 [Cucumis sativus] >KGN46966.1 hypothetical protein Csa_020778 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.5e-41
Identity = 90/109 (82.57%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME+ VE+DDLLFAELTRRISLLIMDDDELPI HT+ TRTV+QLRPR+LPL++DYEN  VR
Sbjct: 1   MEMEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGT-GYRIKSENKRLNHQPSSTYYCKPK 109
           ESKGTGVFIP RLPP KRKQ+N T GYRIKSENKRLN QPS TYYCKPK
Sbjct: 61  ESKGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNGQPSPTYYCKPK 109

BLAST of HG10010277 vs. NCBI nr
Match: XP_022930457.1 (uncharacterized protein LOC111436898 [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 7.9e-41
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME  V +DDLLFAELTRRISLLIMDDDELP VHTDL+RT++++RP QLPL+VDYEN  VR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKK 110
           ESKGTGVFIPTRLP PKRK RN  GYRIKSENKRLN QPSSTYY KPKK
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of HG10010277 vs. NCBI nr
Match: XP_023521928.1 (uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 88/109 (80.73%), Postives = 96/109 (88.07%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME  V++DDLLFAELTRRISLLIMDDDE P VHTDL+RT++++RP QLPL+VDYEN  VR
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKK 110
           ESKGTGVFIPTRLP PKRK RN  GYRIKSENKRLN QPSSTYY KPKK
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of HG10010277 vs. NCBI nr
Match: KAG6593910.1 (hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 88/109 (80.73%), Postives = 96/109 (88.07%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME  V +DDLLFAELTRRISLLIMDDDELP VHTDL+RT++++RP +LPL+VDYEN  VR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKK 110
           ESKGTGVFIPTRLP PKRK RN  GYRIKSENKRLN QPSSTYY KPKK
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of HG10010277 vs. ExPASy TrEMBL
Match: A0A0A0KGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 90/109 (82.57%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME+ VE+DDLLFAELTRRISLLIMDDDELPI HT+ TRTV+QLRPR+LPL++DYEN  VR
Sbjct: 1   MEMEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGT-GYRIKSENKRLNHQPSSTYYCKPK 109
           ESKGTGVFIP RLPP KRKQ+N T GYRIKSENKRLN QPS TYYCKPK
Sbjct: 61  ESKGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNGQPSPTYYCKPK 109

BLAST of HG10010277 vs. ExPASy TrEMBL
Match: A0A6J1EQJ8 (uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC111436898 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.8e-41
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME  V +DDLLFAELTRRISLLIMDDDELP VHTDL+RT++++RP QLPL+VDYEN  VR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKK 110
           ESKGTGVFIPTRLP PKRK RN  GYRIKSENKRLN QPSSTYY KPKK
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of HG10010277 vs. ExPASy TrEMBL
Match: A0A5A7SW60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00710 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0

Query: 5   VENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVRESKG 64
           VENDDLLFAELTRRISLLIMDDDELPIV+T+ TRTV+QLRPR+LPL +DYEN  VRESKG
Sbjct: 3   VENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRESKG 62

Query: 65  TGVFIPTRLPPPKRKQRNGT-GYRIKSENKRLNH--QPSSTYYCKPK 109
           TGVFIPTRLPPPKRKQ+N T GYRIKSENKRLN+  QPS  YYCKPK
Sbjct: 63  TGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of HG10010277 vs. ExPASy TrEMBL
Match: A0A1S3C8R0 (uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0

Query: 5   VENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVRESKG 64
           VENDDLLFAELTRRISLLIMDDDELPIV+T+ TRTV+QLRPR+LPL +DYEN  VRESKG
Sbjct: 3   VENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRESKG 62

Query: 65  TGVFIPTRLPPPKRKQRNGT-GYRIKSENKRLNH--QPSSTYYCKPK 109
           TGVFIPTRLPPPKRKQ+N T GYRIKSENKRLN+  QPS  YYCKPK
Sbjct: 63  TGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of HG10010277 vs. ExPASy TrEMBL
Match: A0A6J1KEC6 (uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 0

Query: 1   MEIGVENDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQLPLLVDYENDLVR 60
           ME  V++DDLLFAELTRRISLLIMDDDELP VHTDL+RT++++RP QLPL+VDY+N  VR
Sbjct: 24  METEVDDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYKNGFVR 83

Query: 61  ESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNHQPSSTYYCKPKK 110
           ESKGTGVFIPTRLP PKRK RN  GYRIKS N RLN QPSSTYY KPKK
Sbjct: 84  ESKGTGVFIPTRLPSPKRKHRNVVGYRIKSGNTRLNSQPSSTYYFKPKK 132

BLAST of HG10010277 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 0

Query: 7   NDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQLRPRQL--------PLLVDYENDL 66
           +DD+ FA+++++ISLLIMD+DE  +    L+ + + L  + L        P +   E   
Sbjct: 8   DDDVFFADISKQISLLIMDEDE-HLNPVSLSSSSSSLSFQGLFRGGYQTAPYMYQQE--- 67

Query: 67  VRESKGTGVFIPTRLPPPKRKQRNGTGYRIKSENKRLNH 98
             +SKGTGVFIP    P +R   +    R  S N +  H
Sbjct: 68  --QSKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQQH 100

BLAST of HG10010277 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 28/84 (33.33%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 7  NDDLLFAELTRRISLLIMDDDELPIVHTDLTRTVNQL-----RPRQLPLLVDYEN---DL 66
          +DD+ FA+++++++LLI D+DE   +    + +   L     +    P ++  E    ++
Sbjct: 8  DDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYNEQINYNV 67

Query: 67 VRESKGTGVFIPTRLPPPKRKQRN 83
          +RESKGTGVFIP R   P+RK  +
Sbjct: 68 IRESKGTGVFIP-RSSQPRRKHNH 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875510.11.7e-4381.82uncharacterized protein LOC120067937 [Benincasa hispida][more]
XP_004149266.13.5e-4182.57uncharacterized protein LOC101220151 [Cucumis sativus] >KGN46966.1 hypothetical ... [more]
XP_022930457.17.9e-4181.65uncharacterized protein LOC111436898 [Cucurbita moschata][more]
XP_023521928.11.3e-4080.73uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo][more]
KAG6593910.12.3e-4080.73hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGT11.7e-4182.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1[more]
A0A6J1EQJ83.8e-4181.65uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC1114368... [more]
A0A5A7SW602.5e-4084.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C8R02.5e-4084.11uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=... [more]
A0A6J1KEC62.1e-3978.90uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227... [more]
Match NameE-valueIdentityDescription
AT5G19190.11.3e-0433.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G06070.11.7e-0433.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..110
NoneNo IPR availablePANTHERPTHR34956:SF2OS05G0397300 PROTEINcoord: 1..98
NoneNo IPR availablePANTHERPTHR34956OS05G0397300 PROTEINcoord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010277.1HG10010277.1mRNA