HG10010235 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010235
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	non-specific lipid-transfer protein-like protein At2g13820
Location	Chr06: 20130603 .. 20130770 (+)
RNA-Seq Expression	HG10010235
Synteny	HG10010235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTAGTGAAAAGTTAGTTGATTTTACAGAGGAAGGATCAAGAAGAAGTGTGCCAACAACAACAGAAGATGGAACATCAAATGGAACTTCAACAATATTGTTGTCCAAAGCTCTGCTCTTCATCTTCCTTGTTCCTGCAACTTTTGCTCCATTAATCCATTGA

mRNA sequence

ATGAAAATTAGTGAAAAGTTAGTTGATTTTACAGAGGAAGGATCAAGAAGAAGTGTGCCAACAACAACAGAAGATGGAACATCAAATGGAACTTCAACAATATTGTTGTCCAAAGCTCTGCTCTTCATCTTCCTTGTTCCTGCAACTTTTGCTCCATTAATCCATTGA

Coding sequence (CDS)

ATGAAAATTAGTGAAAAGTTAGTTGATTTTACAGAGGAAGGATCAAGAAGAAGTGTGCCAACAACAACAGAAGATGGAACATCAAATGGAACTTCAACAATATTGTTGTCCAAAGCTCTGCTCTTCATCTTCCTTGTTCCTGCAACTTTTGCTCCATTAATCCATTGA

Protein sequence

MKISEKLVDFTEEGSRRSVPTTTEDGTSNGTSTILLSKALLFIFLVPATFAPLIH

Homology

[Close]

BLAST of HG10010235 vs. NCBI nr
Match: XP_008447158.1 (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis melo] >XP_008447159.1 PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 11  TEEGSRRSVPTTTEDGTSNG-TSTILLSKALLFIFLVPATFAPLIH 56
           TE GSRR+VPTT EDGTSNG TSTILLSKA+LFIF++ +TFA LIH
Sbjct: 133 TEGGSRRNVPTTREDGTSNGSTSTILLSKAMLFIFILASTFASLIH 178

[Close]

BLAST of HG10010235 vs. ExPASy TrEMBL
Match: A0A1S3BG77 (non-specific lipid-transfer protein-like protein At2g13820 OS=Cucumis melo OX=3656 GN=LOC103489675 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-08
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 11  TEEGSRRSVPTTTEDGTSNG-TSTILLSKALLFIFLVPATFAPLIH 56
           TE GSRR+VPTT EDGTSNG TSTILLSKA+LFIF++ +TFA LIH
Sbjct: 133 TEGGSRRNVPTTREDGTSNGSTSTILLSKAMLFIFILASTFASLIH 178

The following BLAST results are available for this feature:

BLAST of HG10010235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447158.1	1.7e-07	78.26	PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis m...	[more]

BLAST of HG10010235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BG77	8.1e-08	78.26	non-specific lipid-transfer protein-like protein At2g13820 OS=Cucumis melo OX=36...	[more]

BLAST of HG10010235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010235.1	HG10010235.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008289	lipid binding