HG10010157 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010157
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionmyb-related protein Myb4-like
LocationChr06: 19043204 .. 19043569 (-)
RNA-Seq ExpressionHG10010157
SyntenyHG10010157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGATCTCTTCATCACTCACTGATCATACTTACATGACTGAAAATGAGTACTACAGCTACACGGCGGAGGACGCTCCGCCGATCGACGAGAGCTTTTGGTCCGAGGTGGTCGAGAATTCGACGACGAATTCCGATTCGAATTCAAATTCAAATTCAAATTTAAATGGTGATAGTGAAGAGAAAATGGAGGAATTTCCATTGATATCCATGAATATGGTGGAAACAAATTCGGATAAGAGATTATATGGTCAATGTGGTGTTGATGAAGACATGGAATTTTGGTACAATGTTTTTGTCAAAGCTGGAGAAATTTCTGAATTGCCAGAATTTTGA

mRNA sequence

ATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGATCTCTTCATCACTCACTGATCATACTTACATGACTGAAAATGAGTACTACAGCTACACGGCGGAGGACGCTCCGCCGATCGACGAGAGCTTTTGGTCCGAGGTGGTCGAGAATTCGACGACGAATTCCGATTCGAATTCAAATTCAAATTCAAATTTAAATGGTGATAGTGAAGAGAAAATGGAGGAATTTCCATTGATATCCATGAATATGGTGGAAACAAATTCGGATAAGAGATTATATGGTCAATGTGGTGTTGATGAAGACATGGAATTTTGGTACAATGTTTTTGTCAAAGCTGGAGAAATTTCTGAATTGCCAGAATTTTGA

Coding sequence (CDS)

ATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGATCTCTTCATCACTCACTGATCATACTTACATGACTGAAAATGAGTACTACAGCTACACGGCGGAGGACGCTCCGCCGATCGACGAGAGCTTTTGGTCCGAGGTGGTCGAGAATTCGACGACGAATTCCGATTCGAATTCAAATTCAAATTCAAATTTAAATGGTGATAGTGAAGAGAAAATGGAGGAATTTCCATTGATATCCATGAATATGGTGGAAACAAATTCGGATAAGAGATTATATGGTCAATGTGGTGTTGATGAAGACATGGAATTTTGGTACAATGTTTTTGTCAAAGCTGGAGAAATTTCTGAATTGCCAGAATTTTGA

Protein sequence

MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAEDAPPIDESFWSEVVENSTTNSDSNSNSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGEISELPEF
Homology
BLAST of HG10010157 vs. NCBI nr
Match: XP_004147145.1 (transcription factor MYB14 [Cucumis sativus] >KAE8651812.1 hypothetical protein Csa_006634 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.3e-48
Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 0

Query: 1   MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAEDA-PPIDESFWSEVVENSTTNSDSNS 60
           MSPSSQQSSSCEISSSLTDHTY+TENEYYSYTAEDA PPIDESFWSEVV+NS TNS+SNS
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYITENEYYSYTAEDAMPPIDESFWSEVVDNSMTNSNSNS 224

Query: 61  NSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGEISELP 120
           +S+SN N DSEEKMEEFP +SM+M+ET+SDKRL+GQC VD+DMEFWYNVFVKAGEISELP
Sbjct: 225 DSSSNSNYDSEEKMEEFPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAGEISELP 284

Query: 121 EF 122
           EF
Sbjct: 285 EF 286

BLAST of HG10010157 vs. NCBI nr
Match: XP_008460645.1 (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 104/122 (85.25%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 1   MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAEDA-PPIDESFWSEVVENSTTNSDSNS 60
           MSPSSQQSSSCEISSSLTDHTYMTENEYYSYT EDA PPIDESFWS+VVENS TNS+S+S
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTVEDAMPPIDESFWSDVVENSMTNSNSDS 224

Query: 61  NSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGEISELP 120
           +SNSN   DSEEK EEFP +SM+M ETNSDKRL+GQC VD+DMEFWYNVFVKAGEISELP
Sbjct: 225 SSNSNY--DSEEKREEFPPVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGEISELP 284

Query: 121 EF 122
           EF
Sbjct: 285 EF 284

BLAST of HG10010157 vs. NCBI nr
Match: XP_038875538.1 (transcription factor MYB14-like [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0

Query: 1   MSPSSQQSSSCEI-SSSLTDHTYMTENEYYSYTAEDAPPIDESFWSEVVENSTTNSDSNS 60
           MSPSSQQSSSCEI SSSLTDHTY+TENEYYSYTAE+ PPIDESFWSEVVENS T    NS
Sbjct: 164 MSPSSQQSSSCEISSSSLTDHTYITENEYYSYTAEE-PPIDESFWSEVVENSMT----NS 223

Query: 61  NSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGEISELP 120
           NSNSNLN DSEEKMEEFPL+SM+MVETNSDKRL GQC VD+DMEFWYNVFVKA EISELP
Sbjct: 224 NSNSNLNYDSEEKMEEFPLVSMDMVETNSDKRLNGQCVVDDDMEFWYNVFVKAEEISELP 280

Query: 121 EF 122
           EF
Sbjct: 284 EF 280

BLAST of HG10010157 vs. NCBI nr
Match: KAA0065656.1 (myb-related protein Myb4-like [Cucumis melo var. makuwa] >TYK01426.1 myb-related protein Myb4-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 0

Query: 30  SYTAEDA-PPIDESFWSEVVENSTTNSDSNSNSNSNLNGDSEEKMEEFPLISMNMVETNS 89
           SYT EDA PPIDESFWS+VVENS TNS+S+S+SNSN   DSEEK EEFP +SM+M ETNS
Sbjct: 79  SYTVEDAMPPIDESFWSDVVENSMTNSNSDSSSNSNY--DSEEKREEFPPVSMDMTETNS 138

Query: 90  DKRLYGQCGVDEDMEFWYNVFVKAGEISELPEF 122
           DKRL+GQC VD+DMEFWYNVFVKAGEISELPEF
Sbjct: 139 DKRLHGQCVVDDDMEFWYNVFVKAGEISELPEF 169

BLAST of HG10010157 vs. NCBI nr
Match: XP_022138436.1 (transcription factor MYB13-like [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-23
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 0

Query: 1   MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAED--------APPIDESFWSEVV-ENS 60
           MSPSSQQSSSCEI SS+TD +Y+TENEYYSY AE+         P IDESFWSEVV EN 
Sbjct: 149 MSPSSQQSSSCEI-SSVTD-SYVTENEYYSYEAEEDAVALVEALPLIDESFWSEVVIENE 208

Query: 61  TTNSDSNSN-SNSNLNGDSEEKMEEFPLISM-NMVETNSDKRLYGQCGVDEDMEFWYNVF 120
              +++N N SNSN  G   E   EFP++SM +MVE N D +  GQ  +D+DMEFWY+VF
Sbjct: 209 INENENNENGSNSNYYG---EVQTEFPIMSMDHMVELNDDDKSNGQ-SLDDDMEFWYDVF 268

Query: 121 VKAGEISELPEF 122
           +KAG ISELPEF
Sbjct: 269 IKAGGISELPEF 274

BLAST of HG10010157 vs. ExPASy TrEMBL
Match: A0A0A0LI77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G174660 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 0

Query: 1   MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAEDA-PPIDESFWSEVVENSTTNSDSNS 60
           MSPSSQQSSSCEISSSLTDHTY+TENEYYSYTAEDA PPIDESFWSEVV+NS TNS+SNS
Sbjct: 1   MSPSSQQSSSCEISSSLTDHTYITENEYYSYTAEDAMPPIDESFWSEVVDNSMTNSNSNS 60

Query: 61  NSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGEISELP 120
           +S+SN N DSEEKMEEFP +SM+M+ET+SDKRL+GQC VD+DMEFWYNVFVKAGEISELP
Sbjct: 61  DSSSNSNYDSEEKMEEFPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAGEISELP 120

Query: 121 EF 122
           EF
Sbjct: 121 EF 122

BLAST of HG10010157 vs. ExPASy TrEMBL
Match: A0A1S3CCG5 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103499420 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 104/122 (85.25%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 1   MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAEDA-PPIDESFWSEVVENSTTNSDSNS 60
           MSPSSQQSSSCEISSSLTDHTYMTENEYYSYT EDA PPIDESFWS+VVENS TNS+S+S
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTVEDAMPPIDESFWSDVVENSMTNSNSDS 224

Query: 61  NSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGEISELP 120
           +SNSN   DSEEK EEFP +SM+M ETNSDKRL+GQC VD+DMEFWYNVFVKAGEISELP
Sbjct: 225 SSNSNY--DSEEKREEFPPVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGEISELP 284

Query: 121 EF 122
           EF
Sbjct: 285 EF 284

BLAST of HG10010157 vs. ExPASy TrEMBL
Match: A0A5A7VH35 (Myb-related protein Myb4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00090 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.8e-31
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 0

Query: 30  SYTAEDA-PPIDESFWSEVVENSTTNSDSNSNSNSNLNGDSEEKMEEFPLISMNMVETNS 89
           SYT EDA PPIDESFWS+VVENS TNS+S+S+SNSN   DSEEK EEFP +SM+M ETNS
Sbjct: 79  SYTVEDAMPPIDESFWSDVVENSMTNSNSDSSSNSNY--DSEEKREEFPPVSMDMTETNS 138

Query: 90  DKRLYGQCGVDEDMEFWYNVFVKAGEISELPEF 122
           DKRL+GQC VD+DMEFWYNVFVKAGEISELPEF
Sbjct: 139 DKRLHGQCVVDDDMEFWYNVFVKAGEISELPEF 169

BLAST of HG10010157 vs. ExPASy TrEMBL
Match: A0A6J1C9P9 (transcription factor MYB13-like OS=Momordica charantia OX=3673 GN=LOC111009610 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 0

Query: 1   MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTAED--------APPIDESFWSEVV-ENS 60
           MSPSSQQSSSCEI SS+TD +Y+TENEYYSY AE+         P IDESFWSEVV EN 
Sbjct: 149 MSPSSQQSSSCEI-SSVTD-SYVTENEYYSYEAEEDAVALVEALPLIDESFWSEVVIENE 208

Query: 61  TTNSDSNSN-SNSNLNGDSEEKMEEFPLISM-NMVETNSDKRLYGQCGVDEDMEFWYNVF 120
              +++N N SNSN  G   E   EFP++SM +MVE N D +  GQ  +D+DMEFWY+VF
Sbjct: 209 INENENNENGSNSNYYG---EVQTEFPIMSMDHMVELNDDDKSNGQ-SLDDDMEFWYDVF 268

Query: 121 VKAGEISELPEF 122
           +KAG ISELPEF
Sbjct: 269 IKAGGISELPEF 274

BLAST of HG10010157 vs. ExPASy TrEMBL
Match: A0A6J1H520 (transcription factor MYB15-like OS=Cucurbita moschata OX=3662 GN=LOC111460214 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-19
Identity = 67/127 (52.76%), Postives = 74/127 (58.27%), Query Frame = 0

Query: 2   SPSSQQSSSCEISSSLTDHTYMTENEYYSYTAEDA-------PPIDESFWSEVVENSTTN 61
           SPSSQQSSSCEISSSLTD + M ENEYYSY AE         PPIDESFWSEV E+ST  
Sbjct: 165 SPSSQQSSSCEISSSLTDAS-MAENEYYSYPAEGTEAMPEAPPPIDESFWSEVAEDST-- 224

Query: 62  SDSNSNSNSNLNGDSEEKMEEFPLISMNMVETNSDKRLYGQCGVDEDMEFWYNVFVKAGE 121
                                          +NS  + YG+  VD+DMEFWYNVFV+AG 
Sbjct: 225 ------------------------------NSNSMDKSYGESVVDDDMEFWYNVFVQAGG 258

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004147145.13.3e-4886.07transcription factor MYB14 [Cucumis sativus] >KAE8651812.1 hypothetical protein ... [more]
XP_008460645.12.4e-4685.25PREDICTED: myb-related protein Myb4-like [Cucumis melo][more]
XP_038875538.12.0e-4586.89transcription factor MYB14-like [Benincasa hispida][more]
KAA0065656.11.8e-3080.65myb-related protein Myb4-like [Cucumis melo var. makuwa] >TYK01426.1 myb-related... [more]
XP_022138436.12.8e-2360.61transcription factor MYB13-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LI771.6e-4886.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G174660 PE=4 SV=1[more]
A0A1S3CCG51.1e-4685.25myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103499420 PE=4 SV=1[more]
A0A5A7VH358.8e-3180.65Myb-related protein Myb4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A6J1C9P91.4e-2360.61transcription factor MYB13-like OS=Momordica charantia OX=3673 GN=LOC111009610 P... [more]
A0A6J1H5202.7e-1952.76transcription factor MYB15-like OS=Cucurbita moschata OX=3662 GN=LOC111460214 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010157.1HG10010157.1mRNA