Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATTTGGCCGAGGAACAGCGGCCGATCTCCACCATCTACGCCCACTTCCAATTCCCGGTAGTCCGCTTGTCGCTTGTCGAATCTGCGACGCCGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCATGTCTCCGACGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCAAACACATCGGTTTCCGCCTGGTCCGCCGTTCTTAACGCCGCCACGAGCGACGGCGCTGTTTATGCCAAGCAGATTTTCAGCTCCTAATTCGCTAGGTTTTGACGCGGTCGAATCGATTTGGCCAAATCAATTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGGGCCGTCGCCGTATCCGCCGCCCGTCGGTCAGTATTTTACGAATTTGATTGCGATGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTCTACCGAAAGTAGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACCTAACTCTGAAGCTGTGA
mRNA sequence
ATGGCCGAATTTGGCCGAGGAACAGCGGCCGATCTCCACCATCTACGCCCACTTCCAATTCCCGGTAGTCCGCTTGTCGCTTGTCGAATCTGCGACGCCGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCATGTCTCCGACGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCAAACACATCGGTTTCCGCCTGGTCCGCCGTTCTTAACGCCGCCACGAGCGACGGCGCTGTTTATGCCAAGCAGATTTTCAGCTCCTAATTCGCTAGGTTTTGACGCGGTCGAATCGATTTGGCCAAATCAATTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGGGCCGTCGCCGTATCCGCCGCCCGTCGGTCAGTATTTTACGAATTTGATTGCGATGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTCTACCGAAAGTAGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACCTAACTCTGAAGCTGTGA
Coding sequence (CDS)
ATGGCCGAATTTGGCCGAGGAACAGCGGCCGATCTCCACCATCTACGCCCACTTCCAATTCCCGGTAGTCCGCTTGTCGCTTGTCGAATCTGCGACGCCGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCATGTCTCCGACGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCAAACACATCGGTTTCCGCCTGGTCCGCCGTTCTTAACGCCGCCACGAGCGACGGCGCTGTTTATGCCAAGCAGATTTTCAGCTCCTAATTCGCTAGGTTTTGACGCGGTCGAATCGATTTGGCCAAATCAATTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGGGCCGTCGCCGTATCCGCCGCCCGTCGGTCAGTATTTTACGAATTTGATTGCGATGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTCTACCGAAAGTAGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACCTAACTCTGAAGCTGTGA
Protein sequence
MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSPFARSLFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
Homology
BLAST of HG10010146 vs. NCBI nr
Match:
KAG6574909.1 (hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 323.9 bits (829), Expect = 8.9e-85
Identity = 160/189 (84.66%), Postives = 169/189 (89.42%), Query Frame = 0
Query: 1 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
MAEFGR TAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGA+SAAAS
Sbjct: 1 MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGASSAAAS 60
Query: 61 RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSA-PNSLGFDAVESIWPNQFSPFARS 120
RRQ+QQR+QTHR PPG PPRATA+F+PSR+S PNSLGFDA ES+WPNQ SPFARS
Sbjct: 61 RRQSQQRSQTHRLPPG-----PPRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARS 120
Query: 121 LFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKV-GDGGEEDDGRQLYF 180
LFREGP YPPPVGQY TN A EEA GDCTKPYINQLEKCLPKV G GGEEDDGRQLYF
Sbjct: 121 LFREGPPSYPPPVGQYLTNWNAAEEATGDCTKPYINQLEKCLPKVGGGGGEEDDGRQLYF 180
Query: 181 SKLDLTLKL 188
SKLDL+L+L
Sbjct: 181 SKLDLSLRL 184
BLAST of HG10010146 vs. NCBI nr
Match:
KAA0050710.1 (hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 291.6 bits (745), Expect = 4.9e-75
Identity = 147/191 (76.96%), Postives = 161/191 (84.29%), Query Frame = 0
Query: 1 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS
Sbjct: 1 MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60
Query: 61 RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPN-QFSPFARS 120
R Q+QQ+ RFP GP FLTP RATA+F+P+RFS+PNS+GF+ ES+W N Q SPF RS
Sbjct: 61 RSQDQQQ---RRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRS 120
Query: 121 LFREG-PSPYPPP--VGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 180
+FR+G P PYPPP VGQYFTNLI M+E GDCTKPYINQLEKCLPKVG GGEEDD RQL
Sbjct: 121 VFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQL 180
Query: 181 YFSKLDLTLKL 188
Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185
BLAST of HG10010146 vs. NCBI nr
Match:
KAE8651808.1 (hypothetical protein Csa_006798 [Cucumis sativus])
HSP 1 Score: 285.8 bits (730), Expect = 2.7e-73
Identity = 145/191 (75.92%), Postives = 160/191 (83.77%), Query Frame = 0
Query: 1 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT S
Sbjct: 1 MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60
Query: 61 RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSPFARSL 120
RR Q +Q RFP GP FLT PRATA+F+P+R+S+PN +GF+ ES+W NQ SPF RS+
Sbjct: 61 RRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSV 120
Query: 121 FREG-PSPYPPP--VGQYFTNLIAMEE-AVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 180
FREG +PYPPP +GQYFTNLIAMEE GDCTKPYINQLEKCLPKVG+GGEEDD RQL
Sbjct: 121 FREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVGNGGEEDDCRQL 180
Query: 181 YFSKLDLTLKL 188
Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185
BLAST of HG10010146 vs. NCBI nr
Match:
KAB8495643.1 (hypothetical protein FH972_025385 [Carpinus fangiana])
HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0
Query: 13 HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRNQTHR 72
H R P +ACR+CD VF S+QALINHI +H+++E +T+A+ SR Q R T R
Sbjct: 21 HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSR---QHRATTTR 80
Query: 73 FP---------PGPPFLTPP--RATALFMPSRFS-------APNSLGFDAVESIWPNQFS 132
P P F T P R + PS+ S S ++ P Q S
Sbjct: 81 LPSQRDLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVS 140
Query: 133 PFARSLFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGR 188
P AR P GQ ++A EE +GDCTKPY++QLE + V + +D
Sbjct: 141 PMARFSSHAPQLILSSPQGQ--RRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDEN 200
BLAST of HG10010146 vs. NCBI nr
Match:
GAY60743.1 (hypothetical protein CUMW_204410 [Citrus unshiu])
HSP 1 Score: 68.6 bits (166), Expect = 6.7e-08
Identity = 64/198 (32.32%), Postives = 89/198 (44.95%), Query Frame = 0
Query: 11 DLHHLRPLPIPGS--PLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRN 70
D +H R P P + +ACRIC+ VF S+ +LINHI H+ + AA+RRQN+ N
Sbjct: 11 DNNHARKCPFPKTQQQQIACRICNKVFLSTHSLINHIETHMVN---NETAAARRQNELIN 70
Query: 71 Q-----------THRFPPGP--PFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSP 130
Q T + PP P P + R + + F PN + WP +
Sbjct: 71 QFATNPNFYNNFTLQTPPPPTQPPIHSGRIAQEIIRNPFLFPNPQSLLNHQGPWPVPPTN 130
Query: 131 FARSLFREGPSPYPPPV-GQYFTNLIAM--EEAVGDCTKPYINQLEKCLP---KVGDGGE 188
+R GP P V GQ + + TKP I+QL+K +P + GDG
Sbjct: 131 LSRKNLVFGPQLQPHSVFGQQAVRIQQQLSSSSSDRFTKPLIDQLQKKIPAAERYGDGNN 190
BLAST of HG10010146 vs. ExPASy TrEMBL
Match:
A0A5A7U6B7 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00040 PE=4 SV=1)
HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 147/191 (76.96%), Postives = 161/191 (84.29%), Query Frame = 0
Query: 1 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS
Sbjct: 1 MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60
Query: 61 RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPN-QFSPFARS 120
R Q+QQ+ RFP GP FLTP RATA+F+P+RFS+PNS+GF+ ES+W N Q SPF RS
Sbjct: 61 RSQDQQQ---RRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRS 120
Query: 121 LFREG-PSPYPPP--VGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 180
+FR+G P PYPPP VGQYFTNLI M+E GDCTKPYINQLEKCLPKVG GGEEDD RQL
Sbjct: 121 VFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQL 180
Query: 181 YFSKLDLTLKL 188
Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185
BLAST of HG10010146 vs. ExPASy TrEMBL
Match:
A0A0A0LNN3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 PE=4 SV=1)
HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62
Identity = 128/173 (73.99%), Postives = 141/173 (81.50%), Query Frame = 0
Query: 1 MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT S
Sbjct: 1 MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60
Query: 61 RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSPFARSL 120
RR Q +Q RFP GP FLT PRATA+F+P+R+S+PN +GF+ ES+W NQ SPF RS+
Sbjct: 61 RRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSV 120
Query: 121 FREG-PSPYPPP--VGQYFTNLIAMEE-AVGDCTKPYINQLEKCLPKVGDGGE 170
FREG +PYPPP +GQYFTNLIAMEE GDCTKPYINQLEKCLPKV G E
Sbjct: 121 FREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTE 167
BLAST of HG10010146 vs. ExPASy TrEMBL
Match:
A0A5N6L1V8 (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025385 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 3.4e-13
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0
Query: 13 HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRNQTHR 72
H R P +ACR+CD VF S+QALINHI +H+++E +T+A+ SR Q R T R
Sbjct: 21 HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSR---QHRATTTR 80
Query: 73 FP---------PGPPFLTPP--RATALFMPSRFS-------APNSLGFDAVESIWPNQFS 132
P P F T P R + PS+ S S ++ P Q S
Sbjct: 81 LPSQRDLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVS 140
Query: 133 PFARSLFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGR 188
P AR P GQ ++A EE +GDCTKPY++QLE + V + +D
Sbjct: 141 PMARFSSHAPQLILSSPQGQ--RRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDEN 200
BLAST of HG10010146 vs. ExPASy TrEMBL
Match:
A0A2N9E7H8 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 61/181 (33.70%), Postives = 84/181 (46.41%), Query Frame = 0
Query: 26 VACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQ-----NQQRNQTHRFPPGPPFL 85
+ACR+CD VF S+QALINHI +H+ +E ATS R +Q+ + F P
Sbjct: 26 IACRLCDNVFMSTQALINHIESHMGEEEATSRMQHRTNRLPIPSQRDICANPFQPNFALP 85
Query: 86 TPPRATALFMPSRFSAPNSL---------GFDAV---ESIWPNQFSPFARSLFREGPSPY 145
PPR T +R L G + + P SP AR+ F P +
Sbjct: 86 IPPRETQQLFENRLPVMQPLAPPERHPFYGLNRMIVPRPTLPPLVSPMARNNFAV-PPQF 145
Query: 146 PPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLY--FSKLDLTLK 188
Q ++ EE GDCTKPY+NQL+ + K+ D + +D +KLDL LK
Sbjct: 146 ILSAEQAQRRMV--EEPSGDCTKPYLNQLDHPIMKLVDVTDSNDDNNSISGLNKLDLALK 203
BLAST of HG10010146 vs. ExPASy TrEMBL
Match:
A0A2H5Q834 (C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_204410 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 3.3e-08
Identity = 64/198 (32.32%), Postives = 89/198 (44.95%), Query Frame = 0
Query: 11 DLHHLRPLPIPGS--PLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRN 70
D +H R P P + +ACRIC+ VF S+ +LINHI H+ + AA+RRQN+ N
Sbjct: 11 DNNHARKCPFPKTQQQQIACRICNKVFLSTHSLINHIETHMVN---NETAAARRQNELIN 70
Query: 71 Q-----------THRFPPGP--PFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSP 130
Q T + PP P P + R + + F PN + WP +
Sbjct: 71 QFATNPNFYNNFTLQTPPPPTQPPIHSGRIAQEIIRNPFLFPNPQSLLNHQGPWPVPPTN 130
Query: 131 FARSLFREGPSPYPPPV-GQYFTNLIAM--EEAVGDCTKPYINQLEKCLP---KVGDGGE 188
+R GP P V GQ + + TKP I+QL+K +P + GDG
Sbjct: 131 LSRKNLVFGPQLQPHSVFGQQAVRIQQQLSSSSSDRFTKPLIDQLQKKIPAAERYGDGNN 190
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6574909.1 | 8.9e-85 | 84.66 | hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0050710.1 | 4.9e-75 | 76.96 | hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa] | [more] |
KAE8651808.1 | 2.7e-73 | 75.92 | hypothetical protein Csa_006798 [Cucumis sativus] | [more] |
KAB8495643.1 | 6.9e-13 | 35.90 | hypothetical protein FH972_025385 [Carpinus fangiana] | [more] |
GAY60743.1 | 6.7e-08 | 32.32 | hypothetical protein CUMW_204410 [Citrus unshiu] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U6B7 | 2.4e-75 | 76.96 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A0A0LNN3 | 1.3e-62 | 73.99 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 P... | [more] |
A0A5N6L1V8 | 3.4e-13 | 35.90 | C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0253... | [more] |
A0A2N9E7H8 | 2.0e-10 | 33.70 | C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799... | [more] |
A0A2H5Q834 | 3.3e-08 | 32.32 | C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_204410 PE=... | [more] |
Match Name | E-value | Identity | Description | |