HG10010146 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010146
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionC2H2-type domain-containing protein
LocationChr06: 18930551 .. 18931114 (-)
RNA-Seq ExpressionHG10010146
SyntenyHG10010146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATTTGGCCGAGGAACAGCGGCCGATCTCCACCATCTACGCCCACTTCCAATTCCCGGTAGTCCGCTTGTCGCTTGTCGAATCTGCGACGCCGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCATGTCTCCGACGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCAAACACATCGGTTTCCGCCTGGTCCGCCGTTCTTAACGCCGCCACGAGCGACGGCGCTGTTTATGCCAAGCAGATTTTCAGCTCCTAATTCGCTAGGTTTTGACGCGGTCGAATCGATTTGGCCAAATCAATTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGGGCCGTCGCCGTATCCGCCGCCCGTCGGTCAGTATTTTACGAATTTGATTGCGATGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTCTACCGAAAGTAGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACCTAACTCTGAAGCTGTGA

mRNA sequence

ATGGCCGAATTTGGCCGAGGAACAGCGGCCGATCTCCACCATCTACGCCCACTTCCAATTCCCGGTAGTCCGCTTGTCGCTTGTCGAATCTGCGACGCCGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCATGTCTCCGACGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCAAACACATCGGTTTCCGCCTGGTCCGCCGTTCTTAACGCCGCCACGAGCGACGGCGCTGTTTATGCCAAGCAGATTTTCAGCTCCTAATTCGCTAGGTTTTGACGCGGTCGAATCGATTTGGCCAAATCAATTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGGGCCGTCGCCGTATCCGCCGCCCGTCGGTCAGTATTTTACGAATTTGATTGCGATGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTCTACCGAAAGTAGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACCTAACTCTGAAGCTGTGA

Coding sequence (CDS)

ATGGCCGAATTTGGCCGAGGAACAGCGGCCGATCTCCACCATCTACGCCCACTTCCAATTCCCGGTAGTCCGCTTGTCGCTTGTCGAATCTGCGACGCCGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCATGTCTCCGACGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCAAACACATCGGTTTCCGCCTGGTCCGCCGTTCTTAACGCCGCCACGAGCGACGGCGCTGTTTATGCCAAGCAGATTTTCAGCTCCTAATTCGCTAGGTTTTGACGCGGTCGAATCGATTTGGCCAAATCAATTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGGGCCGTCGCCGTATCCGCCGCCCGTCGGTCAGTATTTTACGAATTTGATTGCGATGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTCTACCGAAAGTAGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACCTAACTCTGAAGCTGTGA

Protein sequence

MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSPFARSLFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
Homology
BLAST of HG10010146 vs. NCBI nr
Match: KAG6574909.1 (hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.9 bits (829), Expect = 8.9e-85
Identity = 160/189 (84.66%), Postives = 169/189 (89.42%), Query Frame = 0

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MAEFGR TAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGA+SAAAS
Sbjct: 1   MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGASSAAAS 60

Query: 61  RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSA-PNSLGFDAVESIWPNQFSPFARS 120
           RRQ+QQR+QTHR PPG     PPRATA+F+PSR+S  PNSLGFDA ES+WPNQ SPFARS
Sbjct: 61  RRQSQQRSQTHRLPPG-----PPRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARS 120

Query: 121 LFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKV-GDGGEEDDGRQLYF 180
           LFREGP  YPPPVGQY TN  A EEA GDCTKPYINQLEKCLPKV G GGEEDDGRQLYF
Sbjct: 121 LFREGPPSYPPPVGQYLTNWNAAEEATGDCTKPYINQLEKCLPKVGGGGGEEDDGRQLYF 180

Query: 181 SKLDLTLKL 188
           SKLDL+L+L
Sbjct: 181 SKLDLSLRL 184

BLAST of HG10010146 vs. NCBI nr
Match: KAA0050710.1 (hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.9e-75
Identity = 147/191 (76.96%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS    
Sbjct: 1   MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60

Query: 61  RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPN-QFSPFARS 120
           R Q+QQ+    RFP GP FLTP RATA+F+P+RFS+PNS+GF+  ES+W N Q SPF RS
Sbjct: 61  RSQDQQQ---RRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRS 120

Query: 121 LFREG-PSPYPPP--VGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 180
           +FR+G P PYPPP  VGQYFTNLI M+E  GDCTKPYINQLEKCLPKVG GGEEDD RQL
Sbjct: 121 VFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQL 180

Query: 181 YFSKLDLTLKL 188
           Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185

BLAST of HG10010146 vs. NCBI nr
Match: KAE8651808.1 (hypothetical protein Csa_006798 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 2.7e-73
Identity = 145/191 (75.92%), Postives = 160/191 (83.77%), Query Frame = 0

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT    S
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60

Query: 61  RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSPFARSL 120
           RR  Q  +Q  RFP GP FLT PRATA+F+P+R+S+PN +GF+  ES+W NQ SPF RS+
Sbjct: 61  RRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSV 120

Query: 121 FREG-PSPYPPP--VGQYFTNLIAMEE-AVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 180
           FREG  +PYPPP  +GQYFTNLIAMEE   GDCTKPYINQLEKCLPKVG+GGEEDD RQL
Sbjct: 121 FREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVGNGGEEDDCRQL 180

Query: 181 YFSKLDLTLKL 188
           Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185

BLAST of HG10010146 vs. NCBI nr
Match: KAB8495643.1 (hypothetical protein FH972_025385 [Carpinus fangiana])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0

Query: 13  HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRNQTHR 72
           H  R  P      +ACR+CD VF S+QALINHI +H+++E +T+A+ SR   Q R  T R
Sbjct: 21  HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSR---QHRATTTR 80

Query: 73  FP---------PGPPFLTPP--RATALFMPSRFS-------APNSLGFDAVESIWPNQFS 132
            P           P F T P  R   +  PS+ S          S       ++ P Q S
Sbjct: 81  LPSQRDLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVS 140

Query: 133 PFARSLFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGR 188
           P AR            P GQ    ++A EE +GDCTKPY++QLE  +  V    + +D  
Sbjct: 141 PMARFSSHAPQLILSSPQGQ--RRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDEN 200

BLAST of HG10010146 vs. NCBI nr
Match: GAY60743.1 (hypothetical protein CUMW_204410 [Citrus unshiu])

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-08
Identity = 64/198 (32.32%), Postives = 89/198 (44.95%), Query Frame = 0

Query: 11  DLHHLRPLPIPGS--PLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRN 70
           D +H R  P P +    +ACRIC+ VF S+ +LINHI  H+ +      AA+RRQN+  N
Sbjct: 11  DNNHARKCPFPKTQQQQIACRICNKVFLSTHSLINHIETHMVN---NETAAARRQNELIN 70

Query: 71  Q-----------THRFPPGP--PFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSP 130
           Q           T + PP P  P +   R     + + F  PN       +  WP   + 
Sbjct: 71  QFATNPNFYNNFTLQTPPPPTQPPIHSGRIAQEIIRNPFLFPNPQSLLNHQGPWPVPPTN 130

Query: 131 FARSLFREGPSPYPPPV-GQYFTNLIAM--EEAVGDCTKPYINQLEKCLP---KVGDGGE 188
            +R     GP   P  V GQ    +       +    TKP I+QL+K +P   + GDG  
Sbjct: 131 LSRKNLVFGPQLQPHSVFGQQAVRIQQQLSSSSSDRFTKPLIDQLQKKIPAAERYGDGNN 190

BLAST of HG10010146 vs. ExPASy TrEMBL
Match: A0A5A7U6B7 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00040 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 147/191 (76.96%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS    
Sbjct: 1   MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60

Query: 61  RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPN-QFSPFARS 120
           R Q+QQ+    RFP GP FLTP RATA+F+P+RFS+PNS+GF+  ES+W N Q SPF RS
Sbjct: 61  RSQDQQQ---RRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRS 120

Query: 121 LFREG-PSPYPPP--VGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQL 180
           +FR+G P PYPPP  VGQYFTNLI M+E  GDCTKPYINQLEKCLPKVG GGEEDD RQL
Sbjct: 121 VFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQL 180

Query: 181 YFSKLDLTLKL 188
           Y SK+DLTLKL
Sbjct: 181 YLSKIDLTLKL 185

BLAST of HG10010146 vs. ExPASy TrEMBL
Match: A0A0A0LNN3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62
Identity = 128/173 (73.99%), Postives = 141/173 (81.50%), Query Frame = 0

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT    S
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60

Query: 61  RRQNQQRNQTHRFPPGPPFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSPFARSL 120
           RR  Q  +Q  RFP GP FLT PRATA+F+P+R+S+PN +GF+  ES+W NQ SPF RS+
Sbjct: 61  RRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSV 120

Query: 121 FREG-PSPYPPP--VGQYFTNLIAMEE-AVGDCTKPYINQLEKCLPKVGDGGE 170
           FREG  +PYPPP  +GQYFTNLIAMEE   GDCTKPYINQLEKCLPKV  G E
Sbjct: 121 FREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTE 167

BLAST of HG10010146 vs. ExPASy TrEMBL
Match: A0A5N6L1V8 (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025385 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-13
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0

Query: 13  HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRNQTHR 72
           H  R  P      +ACR+CD VF S+QALINHI +H+++E +T+A+ SR   Q R  T R
Sbjct: 21  HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSR---QHRATTTR 80

Query: 73  FP---------PGPPFLTPP--RATALFMPSRFS-------APNSLGFDAVESIWPNQFS 132
            P           P F T P  R   +  PS+ S          S       ++ P Q S
Sbjct: 81  LPSQRDLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVS 140

Query: 133 PFARSLFREGPSPYPPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGR 188
           P AR            P GQ    ++A EE +GDCTKPY++QLE  +  V    + +D  
Sbjct: 141 PMARFSSHAPQLILSSPQGQ--RRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDEN 200

BLAST of HG10010146 vs. ExPASy TrEMBL
Match: A0A2N9E7H8 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 61/181 (33.70%), Postives = 84/181 (46.41%), Query Frame = 0

Query: 26  VACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQ-----NQQRNQTHRFPPGPPFL 85
           +ACR+CD VF S+QALINHI +H+ +E ATS    R       +Q+    + F P     
Sbjct: 26  IACRLCDNVFMSTQALINHIESHMGEEEATSRMQHRTNRLPIPSQRDICANPFQPNFALP 85

Query: 86  TPPRATALFMPSRFSAPNSL---------GFDAV---ESIWPNQFSPFARSLFREGPSPY 145
            PPR T     +R      L         G + +       P   SP AR+ F   P  +
Sbjct: 86  IPPRETQQLFENRLPVMQPLAPPERHPFYGLNRMIVPRPTLPPLVSPMARNNFAV-PPQF 145

Query: 146 PPPVGQYFTNLIAMEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLY--FSKLDLTLK 188
                Q    ++  EE  GDCTKPY+NQL+  + K+ D  + +D        +KLDL LK
Sbjct: 146 ILSAEQAQRRMV--EEPSGDCTKPYLNQLDHPIMKLVDVTDSNDDNNSISGLNKLDLALK 203

BLAST of HG10010146 vs. ExPASy TrEMBL
Match: A0A2H5Q834 (C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_204410 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-08
Identity = 64/198 (32.32%), Postives = 89/198 (44.95%), Query Frame = 0

Query: 11  DLHHLRPLPIPGS--PLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRN 70
           D +H R  P P +    +ACRIC+ VF S+ +LINHI  H+ +      AA+RRQN+  N
Sbjct: 11  DNNHARKCPFPKTQQQQIACRICNKVFLSTHSLINHIETHMVN---NETAAARRQNELIN 70

Query: 71  Q-----------THRFPPGP--PFLTPPRATALFMPSRFSAPNSLGFDAVESIWPNQFSP 130
           Q           T + PP P  P +   R     + + F  PN       +  WP   + 
Sbjct: 71  QFATNPNFYNNFTLQTPPPPTQPPIHSGRIAQEIIRNPFLFPNPQSLLNHQGPWPVPPTN 130

Query: 131 FARSLFREGPSPYPPPV-GQYFTNLIAM--EEAVGDCTKPYINQLEKCLP---KVGDGGE 188
            +R     GP   P  V GQ    +       +    TKP I+QL+K +P   + GDG  
Sbjct: 131 LSRKNLVFGPQLQPHSVFGQQAVRIQQQLSSSSSDRFTKPLIDQLQKKIPAAERYGDGNN 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6574909.18.9e-8584.66hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050710.14.9e-7576.96hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa][more]
KAE8651808.12.7e-7375.92hypothetical protein Csa_006798 [Cucumis sativus][more]
KAB8495643.16.9e-1335.90hypothetical protein FH972_025385 [Carpinus fangiana][more]
GAY60743.16.7e-0832.32hypothetical protein CUMW_204410 [Citrus unshiu][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6B72.4e-7576.96C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A0A0LNN31.3e-6273.99C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 P... [more]
A0A5N6L1V83.4e-1335.90C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0253... [more]
A0A2N9E7H82.0e-1033.70C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799... [more]
A0A2H5Q8343.3e-0832.32C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_204410 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..79
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 28..48
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 26..53
score: 8.953676

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010146.1HG10010146.1mRNA