HG10010136 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010136
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCACTA en-spm transposon protein
LocationChr06: 18830153 .. 18830320 (+)
RNA-Seq ExpressionHG10010136
SyntenyHG10010136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGGTTGTGTTGGGAAGACGACTAGGGCATGTCAAAGGTCTCGGTTGGGGCCCAAAGCCAAAATTGAGAAGTAATAATAGCTTGTCATCAAGTTCATCCTACGCACAAAAAGAACACGAGCAAGCAGTTGAGATTAGGATTTTAAAAGAACGACTTGAATAA

mRNA sequence

ATGTATGAGGTTGTGTTGGGAAGACGACTAGGGCATGTCAAAGGTCTCGGTTGGGGCCCAAAGCCAAAATTGAGAAGTAATAATAGCTTGTCATCAAGTTCATCCTACGCACAAAAAGAACACGAGCAAGCAGTTGAGATTAGGATTTTAAAAGAACGACTTGAATAA

Coding sequence (CDS)

ATGTATGAGGTTGTGTTGGGAAGACGACTAGGGCATGTCAAAGGTCTCGGTTGGGGCCCAAAGCCAAAATTGAGAAGTAATAATAGCTTGTCATCAAGTTCATCCTACGCACAAAAAGAACACGAGCAAGCAGTTGAGATTAGGATTTTAAAAGAACGACTTGAATAA

Protein sequence

MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRILKERLE
Homology
BLAST of HG10010136 vs. NCBI nr
Match: KAA0042154.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK26728.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1   MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQ 39
           +YE VLGRR G+ KGLGWGP+PK R  N+ SSS++++Q
Sbjct: 119 IYETVLGRRSGYSKGLGWGPRPKSRKTNASSSSTTFSQ 156

BLAST of HG10010136 vs. ExPASy TrEMBL
Match: A0A5D3DT75 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00130 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1   MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQ 39
           +YE VLGRR G+ KGLGWGP+PK R  N+ SSS++++Q
Sbjct: 119 IYETVLGRRSGYSKGLGWGPRPKSRKTNASSSSTTFSQ 156

BLAST of HG10010136 vs. ExPASy TrEMBL
Match: A0A5D3DB16 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001130 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
           +Y+ VLGRR G+ KGLGWGPKPK R   S SSSS+   +  ++ +E++  L E LE
Sbjct: 371 IYDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALE 426

BLAST of HG10010136 vs. ExPASy TrEMBL
Match: A0A5A7T4Y6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00160 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
           +Y+ VLGRR G+ KGLGWGPKPK R   S SSSS+   +  ++ +E++  L E LE
Sbjct: 275 IYDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALE 330

BLAST of HG10010136 vs. ExPASy TrEMBL
Match: A0A5A7UKJ2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold318G00870 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
           +Y+ VLGRR G+ KGLGWGPKPK R   S SSSS+   +  ++ +E++  L E LE
Sbjct: 275 IYDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALE 330

BLAST of HG10010136 vs. ExPASy TrEMBL
Match: A0A5A7U5R2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G00320 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 5   VLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
           VLGRR G++KGLGWGPKPK+R   S SSSS+   +  E+ +E++  L+E LE
Sbjct: 280 VLGRRPGYLKGLGWGPKPKVRRTASASSSSTSCSQSTEKEIELQAKLQEALE 331

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042154.13.0e-0460.53NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK26728.1 NBS-LRR t... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DT751.4e-0460.53NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DB167.1e-0450.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T4Y67.1e-0450.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UKJ27.1e-0450.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7U5R27.1e-0453.85CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010136.1HG10010136.1mRNA