HG10009975 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009975
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 15944501 .. 15948149 (-)
RNA-Seq ExpressionHG10009975
SyntenyHG10009975
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGGATAGTTGGGATTGGAAAAATAAATAATCACACAAAATCTTCTAAAGATATGCAAATTATACCAACAAAATAATTTTCTAGCCAGCTAAATTGGAATTTGGAATTGCTCAAAGCAGCCCAATTTGCAAATTAATGACGCCATGTATTTTTTTTTTTCTATTTAAATTAGTTAAACTTAGTATCGTCATTAAAGCCTGCGGGCTCCACATTTCAATTTCATGGGAATGATTAGAGACCATTATTTTTTCCTAATCGAAATTTATACATTTGCATTAAAAAAAAAAGAGGGAAAACCAAATTATACTCCTAATATTTTATACTTTTCAAAAGAAAAAATGCTCCTAATATTTATAATAAAACTAAAAACAACCAAACCAATTACTCATTTACCTCCCGAGCTACTATTGGGAAAAAATATCTTTTCAGATAAAAAAAAAAAACAATCAAGATAGTTTTTCAAAAAAAAAAAAAAAAAACCAAAAGAGATGTCAAGACTACAATAACAATCATTTTGGTCATGCGAAAGGATTGTTCTAAAAAAAATTTAATCTCATACATTAGTTTATGGATTCTAAAAATTACGTTATTCTGAAATATTCGTTTTTGGTCTTAGTTAAACTTTTATACTTTAAATCAACTTTATTTAATGTTCATCTTGAGCTTATTTACCTTGAAATTACTTGTATTAACTTAATAGTACACTTACTTCAAACTATATCACTAATTTGGTAACATTAAAATAAAGGTAAGAACCATGATTGTTATATATTTTTTAAAAAAGTTTGAGGATTAAAATAGACATTTTAAAAATTTATGGATTAAAATGAACATTTTAGAAGTGTATGACCCAAATATAATCAACTTCAAACTTTGTGTATCATGTACCAAAATAAGATTTATACCAAAAAAAAAAATACTAAATCCTTTGCAAATGGTTGACGATCATGAAAGTTGGAGATAAAGATGAAAGAGAGAGGAGCTGACCTTTGTAGTTTTTCAATGAAGGACAATATGACAATTTCACTCTCAACAAAATATCATATAACACTAGTTTTCAGAATTGAGGTATATCTCATTTTGACCCATTTTTATGGGATTTTCGTACAATTATCTCTATTTTCCCCTAAAAATTATGTCAATGTGTTGTAAATAGGGACCAAAATCTTCACTTTTAAAAGTATATAAACAAAAATGGATATTTTAAAAGTACACTAGCTCAAATTGAACATTTTGAAAGTACATGTACTAAAATGAACCAAAGTTAAAAGTAGAACAAATGAACAAAAATGTGTAAAAATTGAAAAGTATATGTGACATCATTGACATATCATTAATGTAAAGTTATATGTTGGGTAAATACTGAGTTTGTGAACGAAGTAATAAATTTTAAGCTAAAATGAATGGTTACTTGTAAAAATTCAAATGATGGGATTTGTGGCATGTGGGATAGTCTTTTCTTTTCTCTTCTCCTCCTTTTTCCTTTACGGCTATCCACTCTATCCAGTAGAGAAGATGTTGAGTTGTTTTTTTATGCCCTTCACTGCCTTGAAAAAAAATTAAAATGAATGGTAAAAGACGTTATATTATTGTATATAGTTGAAATTTTGATGAGAAAATCTCTTTACAAATTTGTTTGGAACAATTTTAAAATTCAAAAGTTAAAATAAAACGCTTAAACAAGAATAGCTCAACTGACATAAAAATGTACTATCAATTTCGAAATTAAAGGTTTGATTCTCCTTAGTTTAAACAAAATATTTCAAAGTATAGGACTATAACTAAAAATTACCAAAAGTTGAGAGTATATAATTTACTGTTTTTTAAATCTTCAAATATTTTTTTTTCAGTAAACTTCCTCGATTATATAATATCAATTTTGGTGAATATTAGAATTAAAATAATTAAATTATACAATATTTAATAATGTAGGAATTTAAAGGGATATTTATTTTTTAGTTCGAGAAGATAGTGAAATTTGAGTCTCCTTCTTGTTAGTCAATGATAAATATTACTGTTTAGATTGACCATCTAAGAGATAAATGACGCAAGAGTGAATAAAATTTTGAAATTTGTTTAAACAACAAGGCTCCATCATTTGAGATAAAAAGGTGTAATTTGGCCCATCAATTACTCAAACAAGATAATTTTGTTGGATGTTGTAAATAAATAATAAAAAGGGCAAATATCAATATATATCTTTACGCTTTGAAATTTTGTAAATGTATCAATTTACACTTTCATCTAAATCTCGTTTGACCAATCTTAAAACTTATAATTTGAGCCAATTAAATTAATAAATTTTCATAAGTCCGTCAATTTAGACCATTTATTACGATTACTTTTGAAAATCATTAATAAATTAATTCTCAAACGTGTGTAGAATTCTTCGAATGTTAGTTTTATAAAATAGAAAATACATGAATGATTATGAAAGAAAACCCTGATTGATACAATTATTAGTTCAAAGTTTATGAAAAAAAGACAAAATCATCATTAGAAGCCCACATGGCTAATGGAGGACTTGCATATATGATGGTGGTGGTGGCAGAGAAACTCGTTTCACTTTTGTTGTAGGCTCCAAGTCAAAACCCGTTAGCCAAAGCTTTAAAGTTTTTGTTTGGAGTTTAATTAGAGTTTTGAAATTGAAAAAAAAGAAAAAAAAAAGAAAAAAAAAGGAGAAGAAAAGAGAAGGGTTGACAAGAGCAATCATTCACAAATTATAAAGTTTCATTTGCAACTATAGCAAAATGATTTTAGGTTTTGAAAAATAGCAAAATAAATAAATAATTAATTACTTAATAATTTGTGAATGTCATCGACTCATTAATGACCCCAACTCCAACTTATTACATTATTTTTTAAAAAAATGCAAAATTTGGAATGCTAACAAAAAAAAAAAAAAATCTTAACTAACTAAATCTTTAATGCTGAAAATATTAATTAAAATCAAAAGCTGGAAATAAGAAAACTATTAAAAAACAAATAAAAAATGAAATAGAAAAATGAAGTCGATTGATATCCCCATCTTAAGGAAATATGAAGCATATAAGAAACCCCGAAATGGAAAACTCCGAAAACAAACAATCCCCCACATAAACCAGATTTTGGGCATTTATTGTCCAAGTAATCGATGAATATTTAAAATAGAGAAAATTAGACGTTATATCGTTTTTAAAGAGCAGCCAGGTTCAAATTGAAAAATATAAAAAAGAAAAAGAGAATTAGAAAAAGAAAACGAGATAAAAAAAAAAAAAAGAGCAGGCCTTTTGTTTTTCTCCTTCTCCATCTCGCAGTTTTCATTTCTTCTCCGCGCTGCATATCTCTCCTCCATCTCTCGCAGTTCTCTCTTTCACCTCCGGCCGCCCCACACCGCAGCGCCAGGCGCTAGCCACAACACGCCACGCTACGCTGCCGTTCTGTCCAGTGTTCGAACCCACGTACCCCTCCATTTCTGCGCTACCGGTTGCTCCGTTTCTTCTTTTTCCGGCAACAGCGGTAAGCCCAACTTGGTGGTTCTTGATCTGCGTGACCCACGAGCTCCAGCGACGCCCTCTCGGCTAACCGGCAGTGATTCCATCGAATTAGTGGCGAACCGACCATTGACGTGTATTTACCCTCTGTTCGACGAGTATCAGTACTGA

mRNA sequence

ATGTTTTCATTTCTTCTCCGCGCTGCATATCTCTCCTCCATCTCTCGCAGTTCTCTCTTTCACCTCCGGCCGCCCCACACCGCAGCGCCAGGCGCTAGCCACAACACGCCACGCTACGCTGCCGTTCTGTCCAGTGTTCGAACCCACGTACCCCTCCATTTCTGCGCTACCGGTTGCTCCGTTTCTTCTTTTTCCGGCAACAGCGGTAAGCCCAACTTGGTGGTTCTTGATCTGCGTGACCCACGAGCTCCAGCGACGCCCTCTCGGCTAACCGGCAGTGATTCCATCGAATTAGTGGCGAACCGACCATTGACGTGTATTTACCCTCTGTTCGACGAGTATCAGTACTGA

Coding sequence (CDS)

ATGTTTTCATTTCTTCTCCGCGCTGCATATCTCTCCTCCATCTCTCGCAGTTCTCTCTTTCACCTCCGGCCGCCCCACACCGCAGCGCCAGGCGCTAGCCACAACACGCCACGCTACGCTGCCGTTCTGTCCAGTGTTCGAACCCACGTACCCCTCCATTTCTGCGCTACCGGTTGCTCCGTTTCTTCTTTTTCCGGCAACAGCGGTAAGCCCAACTTGGTGGTTCTTGATCTGCGTGACCCACGAGCTCCAGCGACGCCCTCTCGGCTAACCGGCAGTGATTCCATCGAATTAGTGGCGAACCGACCATTGACGTGTATTTACCCTCTGTTCGACGAGTATCAGTACTGA

Protein sequence

MFSFLLRAAYLSSISRSSLFHLRPPHTAAPGASHNTPRYAAVLSSVRTHVPLHFCATGCSVSSFSGNSGKPNLVVLDLRDPRAPATPSRLTGSDSIELVANRPLTCIYPLFDEYQY
Homology
[Close]
BLAST of HG10009975 vs. NCBI nr
Match: KAE8651780.1 (hypothetical protein Csa_006018, partial [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 45/94 (47.87%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 20  FHLRPPHTAAPGASHNTPRYAAVLSSVRTHVPLHFCATGCSVSSFSGNSGKPNL-VVLDL 79
           F L PP TA PGAS     Y  +   +                   GNS KP+L VVLDL
Sbjct: 13  FSLSPPDTAPPGASPPFLSYRLLCFFL------------------FGNSVKPSLVVVLDL 72

Query: 80  RDPRAPATPSRLTGSDSIELVANRPLTCIYPLFD 113
             PRA  TPSRLTG   I+ VANR LTCI PLFD
Sbjct: 73  PHPRASPTPSRLTGCHFIQSVANRSLTCISPLFD 88

[Close]
BLAST of HG10009975 vs. ExPASy TrEMBL
Match: A0A0A0LID0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G150010 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 48/98 (48.98%), Postives = 52/98 (53.06%), Query Frame = 0 

Query: 20  FHLRPPHTAAPGASHNTPRYAAVLSSVRTHVPLHFCATGCSVSSFSGNSGKPNL-VVLDL 79
           F L PP TA PGAS     Y  +   +                   GNS KP+L VVLDL
Sbjct: 38  FSLSPPDTAPPGASPPFLSYRLLCFFL------------------FGNSVKPSLVVVLDL 97

Query: 80  RDPRAPATPSRLTGSDSIELVANRPLTCIYPLFDEYQY 117
             PRA  TPSRLTG   I+ VANR LTCI PLFDEY Y
Sbjct: 98  PHPRASPTPSRLTGCHFIQSVANRSLTCISPLFDEYHY 117

The following BLAST results are available for this feature:
BLAST of HG10009975 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651780.12.7e-0747.87hypothetical protein Csa_006018, partial [Cucumis sativus][more]
BLAST of HG10009975 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009975 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LID01.1e-0948.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G150010 PE=4 SV=1[more]
BLAST of HG10009975 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009975.1HG10009975.1mRNA