HG10009964 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009964
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 15638662 .. 15639720 (+)
RNA-Seq ExpressionHG10009964
SyntenyHG10009964
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACATAGTTAGGAACTTCTTCTTCAAGACCAACACAAAAATTGTAAGGAGAGAGATTCAATTTGCCTTTAATGTTTTAGGCTCTGATGCCGCTATACCCATTGATCTAAGAGTCAAACTCACCAACTTGTATTTCTTAAAGAGCTTCCTAATTCCTACACAAGGACAAAATAAAGTAAGTTGGAAGCATCTAAAGATGTTGGATGATGTAGAAAAATTTAGATCTTATCCATGGGGAGGGTGTCTTTTGAACTTACTATAGAATTTTTTAAGAAGGGTGTCATCAACAAACCATCTTAAATTTTTCTACAAGGATTTCCACTTGCCTTGGTTTATTGGGCTTTTGAGGTGATACCAAGACTATCCAACCCTACTATTGGATTTGTAAGAAGAATAAAAAGTGATGGGCCAAGAATCATTCAATGCGAATCACAAGAACCAGGAGATTGACAACACATCAATAACAATATCTTCAAAGCTACTGGTGTAAATCTTTTATCATTGTTATTTATTTGTTTATTATTAAGCATGTTATCGAAACTATCACTGGTATATAGCTTCTATCAAACTATCAGTGATAGCTTCTATCACTGATTTCAAGCTATCATTGATAGCATGTTATCGGTGATAACTTTTATCATTGATAGCATATTATTAGTGGTAGATTTTATCATTGATAGCATAATATCAGTGATAGAAGATAGCTTAAAATCAATGATAGTTTCTATAAATATAGTATCACTGACATCTTCATTTATCTTTCATTCATCTTTTAGTTTTCTGTTGTTCCATTGGTTCCAACTGAACAAGAATTACAATCAAACTACTATGCGTATTTCAGGTTGTTGAAAAGACTCTTAAAAAGAGTCCAAAAAAGTATAGACCAAAGGTTGCAGCTAGGGACGAGCTTGTTGTTGAGAAGATACCGAAGAGACGAACAAAACCAACCAAGAAAATTTTGGAGAATGCAAAAAATCCAAAAAAGGAAAAAAAATGCATTCTCCAAGGTTTTTCCAAGCAAAAATACAAGGCATTCTCCAAGGTAGAAGGATGA

mRNA sequence

ATGGACAACATAGTTAGGAACTTCTTCTTCAAGACCAACACAAAAATTGTAAGGAGAGAGATTCAATTTGCCTTTAATGTTTTAGGCTCTGATGCCGCTATACCCATTGATCTAAGAGTCAAACTCACCAACTTGTATTTCTTAAAGAGCTTCCTAATTCCTACACAAGGACAAAATAAAGTTGTTGAAAAGACTCTTAAAAAGAGTCCAAAAAAGTATAGACCAAAGGTTGCAGCTAGGGACGAGCTTGTTGTTGAGAAGATACCGAAGAGACGAACAAAACCAACCAAGAAAATTTTGGAGAATGCAAAAAATCCAAAAAAGGAAAAAAAATGCATTCTCCAAGGTTTTTCCAAGCAAAAATACAAGGCATTCTCCAAGGTAGAAGGATGA

Coding sequence (CDS)

ATGGACAACATAGTTAGGAACTTCTTCTTCAAGACCAACACAAAAATTGTAAGGAGAGAGATTCAATTTGCCTTTAATGTTTTAGGCTCTGATGCCGCTATACCCATTGATCTAAGAGTCAAACTCACCAACTTGTATTTCTTAAAGAGCTTCCTAATTCCTACACAAGGACAAAATAAAGTTGTTGAAAAGACTCTTAAAAAGAGTCCAAAAAAGTATAGACCAAAGGTTGCAGCTAGGGACGAGCTTGTTGTTGAGAAGATACCGAAGAGACGAACAAAACCAACCAAGAAAATTTTGGAGAATGCAAAAAATCCAAAAAAGGAAAAAAAATGCATTCTCCAAGGTTTTTCCAAGCAAAAATACAAGGCATTCTCCAAGGTAGAAGGATGA

Protein sequence

MDNIVRNFFFKTNTKIVRREIQFAFNVLGSDAAIPIDLRVKLTNLYFLKSFLIPTQGQNKVVEKTLKKSPKKYRPKVAARDELVVEKIPKRRTKPTKKILENAKNPKKEKKCILQGFSKQKYKAFSKVEG
Homology
[Close]
BLAST of HG10009964 vs. NCBI nr
Match: XP_038896339.1 (myb-like protein X [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-07
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 58  QNKVVEKTLKKSPKKYRPKVAAR--DELVVEKIPKRRTKPTKKILENAKNPKKEKKCIL 115
           + KV E TL+KSPKKYRPKVA +  DE VVE  PKR+T+ TKKILEN +N K++KK +L
Sbjct: 80  EEKVAEMTLRKSPKKYRPKVATKNMDEFVVENRPKRQTELTKKILENTRNIKRDKKKVL 138

[Close]
BLAST of HG10009964 vs. NCBI nr
Match: XP_038885971.1 (chromatin modification-related protein EAF7-like [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-06
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 61  VVEKTLKKSPKKYRPKVAARDELVVEKIPKRRTKPTKKILENAKNPKKEKK 112
           V+EKTLKKSPKKYRPKV   + +   K PKR+TKPTKKILENAK  KK+KK
Sbjct: 169 VIEKTLKKSPKKYRPKVVI-ENMDDNKRPKRQTKPTKKILENAKKQKKDKK 218

[Close]
BLAST of HG10009964 vs. NCBI nr
Match: XP_038880505.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-05
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 58  QNKVVEKTLKKSPKKYRPKVAARDELVVEKIPKRRTKPTKKILENAKNPKKEKK 112
           +  V+EKTLKKSPKKYRPKV     +   K PKR+ KPTKKILENAK  KK+KK
Sbjct: 204 KKNVIEKTLKKSPKKYRPKVVI-GNIEDNKRPKRQAKPTKKILENAKKQKKDKK 256

[Close]
BLAST of HG10009964 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 58  QNKVVEKTLKKSPKKYRPKVAARDELVVEKIPKRRTKPTKKILENAKNPKKEKK 112
           +  V+EKTLKKS KKYRPKV   + +   K PKR+ KPTKKILENAK  KK+KK
Sbjct: 215 KKNVIEKTLKKSLKKYRPKVVI-ENIKDNKRPKRQAKPTKKILENAKKQKKDKK 267

[Close]
BLAST of HG10009964 vs. NCBI nr
Match: XP_038875107.1 (nucleophosmin-like [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 58  QNKVVEKTLKKSPKKYRPKVAARDELVVEKIPKRRTKPTKKILENAKNPKKEKK 112
           + KV+EKTLK SP KYRPKV   + +   K PKR+ KPT KILENAK  KK+KK
Sbjct: 107 KKKVIEKTLKNSPNKYRPKV-VNENIEDNKRPKRQAKPTNKILENAKKQKKDKK 159

The following BLAST results are available for this feature:
BLAST of HG10009964 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896339.18.8e-0762.71myb-like protein X [Benincasa hispida][more]
XP_038885971.14.4e-0670.59chromatin modification-related protein EAF7-like [Benincasa hispida][more]
XP_038880505.12.8e-0564.81glutamic acid-rich protein-like [Benincasa hispida][more]
XP_038891747.11.8e-0462.96pescadillo homolog [Benincasa hispida][more]
XP_038875107.11.8e-0461.11nucleophosmin-like [Benincasa hispida][more]
BLAST of HG10009964 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009964 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009964 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009964.1HG10009964.1mRNA