HG10009936 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009936
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cold shock protein 2-like
Location	Chr06: 14852368 .. 14852940 (+)
RNA-Seq Expression	HG10009936
Synteny	HG10009936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCGCAGAAGGGATTTGGGTTCATAGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACCTCCATTCGGTCAGAAGGATTTCGGACTCTTTTCGATGGCCAAGCTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTTGCTGTAATTGGTAGATCTACTGGATATGGAGGAGGTCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTTTGGAAGGTTCGGTGGTAGTGGCCGTGGTTTTGGTAGAGGAGGACGGTACGAAGGCCCAACCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGCCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGGGGAAACGGCGGTGCGCCTCCTGTCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGCTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

mRNA sequence

ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCGCAGAAGGGATTTGGGTTCATAGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACCTCCATTCGGTCAGAAGGATTTCGGACTCTTTTCGATGGCCAAGCTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTTGCTGTAATTGGTAGATCTACTGGATATGGAGGAGGTCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTTTGGAAGGTTCGGTGGTAGTGGCCGTGGTTTTGGTAGAGGAGGACGGTACGAAGGCCCAACCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGCCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGGGGAAACGGCGGTGCGCCTCCTGTCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGCTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Coding sequence (CDS)

ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCGCAGAAGGGATTTGGGTTCATAGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACCTCCATTCGGTCAGAAGGATTTCGGACTCTTTTCGATGGCCAAGCTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTTGCTGTAATTGGTAGATCTACTGGATATGGAGGAGGTCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTTTGGAAGGTTCGGTGGTAGTGGCCGTGGTTTTGGTAGAGGAGGACGGTACGAAGGCCCAACCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGCCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGGGGAAACGGCGGTGCGCCTCCTGTCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGCTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Protein sequence

MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDCQNESK

Homology

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BLAST of HG10009936 vs. NCBI nr
Match: XP_038906549.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 328.9 bits (842), Expect = 2.8e-86
Identity = 174/190 (91.58%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA +DLFVHQTSIRSEGFRTLFDGQAVEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASEDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           EDQR+KAVDV VIGRSTGYGGGRGGGRGRGGA+GRFGG GRGFGRGGRYE  +GGFGG G
Sbjct: 61  EDQRSKAVDVTVIGRSTGYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEDSSGGFGGRG 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 180
           GGR GGECYNCGRMGHLARDCYRGNGGAPP    GRGYGGGRGYGGG GGGCYNCGDTGH
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRGYGGGRGYGGGAGGGCYNCGDTGH 180

Query: 181 FARDCQNESK 191
           FARDCQNESK
Sbjct: 181 FARDCQNESK 186

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BLAST of HG10009936 vs. NCBI nr
Match: XP_022993723.1 (cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016506.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.1 bits (832), Expect = 4.0e-85
Identity = 176/196 (89.80%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGG----SGRGFGR-GGRYEGPTGG 120
           EDQRAKAVDV V GRS+GYGGGRGG RGRGG +GRFGG     GRGFGR GGRY+GP+GG
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 FGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYN 180
           FGGGGGGR GGECYNCGRMGHLARDCYRGNGGAPP RGGGRGYGGGRGYGGGGGG GCYN
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGRGCYN 180

Query: 181 CGDTGHFARDCQNESK 191
           CGDTGHFARDCQNESK
Sbjct: 181 CGDTGHFARDCQNESK 196

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BLAST of HG10009936 vs. NCBI nr
Match: XP_023549669.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 5.3e-85
Identity = 176/198 (88.89%), Postives = 182/198 (91.92%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVEF+IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFSIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRF------GGSGRGFGR-GGRYEGPT 120
           EDQRAKAVDV V GRS+GYGGGRGG RGRGG +GRF      GG GRGFGR GGRY+GP+
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGGGRGFGRGGGRYDGPS 120

Query: 121 GGFGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GC 180
           GGFGGGGGGR GGECYNCGRMGHLARDCYRGNGGAPP RGGGRGYGGGRGYGGGGGG GC
Sbjct: 121 GGFGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGRGC 180

Query: 181 YNCGDTGHFARDCQNESK 191
           YNCGDTGHFARDCQNESK
Sbjct: 181 YNCGDTGHFARDCQNESK 198

[Close]

BLAST of HG10009936 vs. NCBI nr
Match: XP_022938383.1 (cold shock protein 2-like [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 6.9e-85
Identity = 176/198 (88.89%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGG----SGRGFGR-GGRYEGPTGG 120
           EDQRAKAVDV V GRS+GYGGGRGG RGRGG +GRFGG     GRGFGR GGRY+GP+GG
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 FGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG---GC 180
           FGGGGGGR GGECYNCGRMGHLARDCYRGNGGAPP RGGGRGYGGGRGYGGGGGG   GC
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGGGRGC 180

Query: 181 YNCGDTGHFARDCQNESK 191
           YNCGDTGHFARDCQNESK
Sbjct: 181 YNCGDTGHFARDCQNESK 198

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BLAST of HG10009936 vs. NCBI nr
Match: XP_008465791.1 (PREDICTED: cold shock protein 2-like [Cucumis melo] >XP_008465792.1 PREDICTED: cold shock protein 2-like [Cucumis melo] >KAA0047448.1 cold shock protein 2-like [Cucumis melo var. makuwa] >TYJ98642.1 cold shock protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.8e-78
Identity = 165/191 (86.39%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           +DQRAKAVDV VI RST YGGGRGGGRGRGG++GRFGG GRGFGRG  Y+GP+     GG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPS-----GG 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYNCGDTG 180
           GGR GGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGYGGGGGG GCYNCGDTG
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGYGGGGGGRGCYNCGDTG 180

Query: 181 HFARDCQNESK 191
           HFARDCQNESK
Sbjct: 181 HFARDCQNESK 182

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BLAST of HG10009936 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 108/195 (55.38%), Postives = 126/195 (64.62%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD GDDLFVHQ+SIRSEGFR+L   +AVEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGG-GGGGR 124
            KA+DV+    +   G   GG  G  G FG  GG G G G GG Y G  GG+GG GGGGR
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFG--GGRGGGRGSGGGYGGGGGGYGGRGGGGR 128

Query: 125 AGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGY-------------GGGGGG 184
            G +CY CG  GH+ARDC  G GG     GGG GYGGG GY             GGGGGG
Sbjct: 129 GGSDCYKCGEPGHMARDCSEGGGG---YGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGG 188

Query: 185 GCYNCGDTGHFARDC 186
            CY+CG++GHFARDC
Sbjct: 189 SCYSCGESGHFARDC 198

[Close]

BLAST of HG10009936 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-38
Identity = 112/211 (53.08%), Postives = 130/211 (61.61%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQR 64
           +R+ GTV+WFS QKGFGFI PDD G+DLFVHQ+ IRSEGFR+L +G+ VEF ++   D R
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 65  AKAVDV-----AVI-------------------GRSTGY-GGGRGGGRGRGGAFGRFGGS 124
            KAVDV     A +                   G S GY GGGRGG RG GG  G +GG 
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 125 GRGFGRGGRYEGPTGGFGGGGGGRAGGE-----CYNCGRMGHLARDCYRGNGGAPPVRGG 184
           G G+G G RY G  GG+GGGGG   GG      C+ CG  GH ARDC +  GG     GG
Sbjct: 127 G-GYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG----GG 186

Query: 185 GRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 186
           GR  GGG   GGGGGGGCY CG+ GHFAR+C
Sbjct: 187 GRFGGGG---GGGGGGGCYKCGEDGHFAREC 209

[Close]

BLAST of HG10009936 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.9e-35
Identity = 103/185 (55.68%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D GDDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVAVIGRS--TGYGGGRGGGRGRGGAFGRFGGSGRGFGR-GGRYEGPTGGFGGGGGG 125
           KA++V+    +   G  GG G   GRGG FG  GG GRG GR GG Y G  GG G GG G
Sbjct: 74  KAIEVSGPDGAPVQGNSGGGGSSGGRGG-FG--GGGGRGGGRGGGSYGGGYGGRGSGGRG 133

Query: 126 RAGGE--CYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 185
             GG+  C+ CG  GH+AR+C +G GG     GGGR   GG G GGGGG  CY+CG++GH
Sbjct: 134 GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGH 193

[Close]

BLAST of HG10009936 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.1e-24
Identity = 96/212 (45.28%), Postives = 114/212 (53.77%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD G++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVAVIGRSTGYGGG-----RGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGG--FGG 125
           KA++V      T  GGG         RG GG     G  G         +G +GG  FGG
Sbjct: 70  KAIEV------TAPGGGSLNKKENSSRGSGGNCFNCGEVGH---MAKDCDGGSGGKSFGG 129

Query: 126 GGGGRAG--GECYNCGRMGHLARDCYRGNGGAPPVRGGG-----------------RGYG 185
           GGG R+G  GECY CG +GH ARDC +  GG     GGG                 RG  
Sbjct: 130 GGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 189

Query: 186 GGRGYGGG-----GGGGCYNCGDTGHFARDCQ 187
           GG  YGGG     GG GCY CG  GHFARDC+
Sbjct: 190 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCR 212

[Close]

BLAST of HG10009936 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-22
Identity = 90/191 (47.12%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD   +LFVHQ+SI SEG+R+L  G AVEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRST--GYGGGRGGGRGRGGAFGRFGGSG-RGFGRGGRYEGPTGGFGGGGGG 125
           KAV+V   G  +       RG G  RGG     GGSG    G  G      G  GGGGGG
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGG-----GGSGCYNCGELGHISKDCGIGGGGGGG 129

Query: 126 ----RAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDT 185
               R G  CYNCG  GH ARDC               G G  RG   GG  GCY CGD 
Sbjct: 130 ERRSRGGEGCYNCGDTGHFARDC------------TSAGNGDQRGATKGGNDGCYTCGDV 183

Query: 186 GHFARDCQNES 190
           GH ARDC  +S
Sbjct: 190 GHVARDCTQKS 183

[Close]

BLAST of HG10009936 vs. ExPASy TrEMBL
Match: A0A6J1K351 (cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.0e-85
Identity = 176/196 (89.80%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGG----SGRGFGR-GGRYEGPTGG 120
           EDQRAKAVDV V GRS+GYGGGRGG RGRGG +GRFGG     GRGFGR GGRY+GP+GG
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 FGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYN 180
           FGGGGGGR GGECYNCGRMGHLARDCYRGNGGAPP RGGGRGYGGGRGYGGGGGG GCYN
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGRGCYN 180

Query: 181 CGDTGHFARDCQNESK 191
           CGDTGHFARDCQNESK
Sbjct: 181 CGDTGHFARDCQNESK 196

[Close]

BLAST of HG10009936 vs. ExPASy TrEMBL
Match: A0A6J1FIQ9 (cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.3e-85
Identity = 176/198 (88.89%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSI+SEGFRTLFDGQAVEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGG----SGRGFGR-GGRYEGPTGG 120
           EDQRAKAVDV V GRS+GYGGGRGG RGRGG +GRFGG     GRGFGR GGRY+GP+GG
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 FGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG---GC 180
           FGGGGGGR GGECYNCGRMGHLARDCYRGNGGAPP RGGGRGYGGGRGYGGGGGG   GC
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGGGRGC 180

Query: 181 YNCGDTGHFARDCQNESK 191
           YNCGDTGHFARDCQNESK
Sbjct: 181 YNCGDTGHFARDCQNESK 198

[Close]

BLAST of HG10009936 vs. ExPASy TrEMBL
Match: A0A1S3CPN9 (cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.4e-78
Identity = 165/191 (86.39%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           +DQRAKAVDV VI RST YGGGRGGGRGRGG++GRFGG GRGFGRG  Y+GP+     GG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPS-----GG 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYNCGDTG 180
           GGR GGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGYGGGGGG GCYNCGDTG
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGYGGGGGGRGCYNCGDTG 180

Query: 181 HFARDCQNESK 191
           HFARDCQNESK
Sbjct: 181 HFARDCQNESK 182

[Close]

BLAST of HG10009936 vs. ExPASy TrEMBL
Match: A0A5A7TX13 (Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00260 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.4e-78
Identity = 165/191 (86.39%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           +DQRAKAVDV VI RST YGGGRGGGRGRGG++GRFGG GRGFGRG  Y+GP+     GG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPS-----GG 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYNCGDTG 180
           GGR GGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGYGGGGGG GCYNCGDTG
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGYGGGGGGRGCYNCGDTG 180

Query: 181 HFARDCQNESK 191
           HFARDCQNESK
Sbjct: 181 HFARDCQNESK 182

[Close]

BLAST of HG10009936 vs. ExPASy TrEMBL
Match: A0A6J1CIH7 (glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 165/204 (80.88%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEV RSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQAVE++IDYD
Sbjct: 1   MAEVXRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGG--GRGRGGAFGRF-------GGSGRGFGRGGRYEG 120
           EDQRAKAVDV VIGRS+ YGGGRGG  GRGRGG +GRF       GG GRGFGRGGRY+G
Sbjct: 61  EDQRAKAVDVTVIGRSSEYGGGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDG 120

Query: 121 PTGGFGGGGGGRAGGECYNCGRMGHLARDCYRGNG--GAPPVRGGGRGYGGGRGYGGGGG 180
           P+GGF  GGGGR GGECYNCGR+GHLARDCYRGNG  GAPP RGG R YGGGR YGGGGG
Sbjct: 121 PSGGF--GGGGRGGGECYNCGRVGHLARDCYRGNGGAGAPPGRGGTRRYGGGRSYGGGGG 180

Query: 181 ----GGCYNCGDTGHFARDCQNES 190
               GGC+NCGD GHFAR+C NES
Sbjct: 181 GGGAGGCFNCGDAGHFARECPNES 202

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BLAST of HG10009936 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 108/195 (55.38%), Postives = 126/195 (64.62%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD GDDLFVHQ+SIRSEGFR+L   +AVEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGG-GGGGR 124
            KA+DV+    +   G   GG  G  G FG  GG G G G GG Y G  GG+GG GGGGR
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFG--GGRGGGRGSGGGYGGGGGGYGGRGGGGR 128

Query: 125 AGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGY-------------GGGGGG 184
            G +CY CG  GH+ARDC  G GG     GGG GYGGG GY             GGGGGG
Sbjct: 129 GGSDCYKCGEPGHMARDCSEGGGG---YGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGG 188

Query: 185 GCYNCGDTGHFARDC 186
            CY+CG++GHFARDC
Sbjct: 189 SCYSCGESGHFARDC 198

[Close]

BLAST of HG10009936 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-36
Identity = 103/185 (55.68%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D GDDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVAVIGRS--TGYGGGRGGGRGRGGAFGRFGGSGRGFGR-GGRYEGPTGGFGGGGGG 125
           KA++V+    +   G  GG G   GRGG FG  GG GRG GR GG Y G  GG G GG G
Sbjct: 74  KAIEVSGPDGAPVQGNSGGGGSSGGRGG-FG--GGGGRGGGRGGGSYGGGYGGRGSGGRG 133

Query: 126 RAGGE--CYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 185
             GG+  C+ CG  GH+AR+C +G GG     GGGR   GG G GGGGG  CY+CG++GH
Sbjct: 134 GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGH 193

[Close]

BLAST of HG10009936 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 112.1 bits (279), Expect = 5.0e-25
Identity = 96/212 (45.28%), Postives = 114/212 (53.77%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD G++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVAVIGRSTGYGGG-----RGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGG--FGG 125
           KA++V      T  GGG         RG GG     G  G         +G +GG  FGG
Sbjct: 70  KAIEV------TAPGGGSLNKKENSSRGSGGNCFNCGEVGH---MAKDCDGGSGGKSFGG 129

Query: 126 GGGGRAG--GECYNCGRMGHLARDCYRGNGGAPPVRGGG-----------------RGYG 185
           GGG R+G  GECY CG +GH ARDC +  GG     GGG                 RG  
Sbjct: 130 GGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 189

Query: 186 GGRGYGGG-----GGGGCYNCGDTGHFARDCQ 187
           GG  YGGG     GG GCY CG  GHFARDC+
Sbjct: 190 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCR 212

[Close]

BLAST of HG10009936 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-23
Identity = 90/191 (47.12%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD   +LFVHQ+SI SEG+R+L  G AVEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRST--GYGGGRGGGRGRGGAFGRFGGSG-RGFGRGGRYEGPTGGFGGGGGG 125
           KAV+V   G  +       RG G  RGG     GGSG    G  G      G  GGGGGG
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGG-----GGSGCYNCGELGHISKDCGIGGGGGGG 129

Query: 126 ----RAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDT 185
               R G  CYNCG  GH ARDC               G G  RG   GG  GCY CGD 
Sbjct: 130 ERRSRGGEGCYNCGDTGHFARDC------------TSAGNGDQRGATKGGNDGCYTCGDV 183

Query: 186 GHFARDCQNES 190
           GH ARDC  +S
Sbjct: 190 GHVARDCTQKS 183

The following BLAST results are available for this feature:

BLAST of HG10009936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906549.1	2.8e-86	91.58	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_022993723.1	4.0e-85	89.80	cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1,...	[more]
XP_023549669.1	5.3e-85	88.89	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938383.1	6.9e-85	88.89	cold shock protein 2-like [Cucurbita moschata]	[more]
XP_008465791.1	2.8e-78	86.39	PREDICTED: cold shock protein 2-like [Cucumis melo] >XP_008465792.1 PREDICTED: c...	[more]

BLAST of HG10009936 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41188	2.4e-40	55.38	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
P27484	3.9e-38	53.08	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	8.9e-35	55.68	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q94C69	7.1e-24	45.28	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	3.9e-22	47.12	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of HG10009936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K351	2.0e-85	89.80	cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1	[more]
A0A6J1FIQ9	3.3e-85	88.89	cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=...	[more]
A0A1S3CPN9	1.4e-78	86.39	cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1	[more]
A0A5A7TX13	1.4e-78	86.39	Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1CIH7	7.0e-75	80.88	glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 ...	[more]

BLAST of HG10009936 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38680.1	1.7e-41	55.38	glycine rich protein 2	[more]
AT2G21060.1	6.3e-36	55.68	glycine-rich protein 2B	[more]
AT2G17870.1	5.0e-25	45.28	cold shock domain protein 3	[more]
AT4G36020.1	2.8e-23	47.12	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 30..39 score: 58.54 coord: 45..63 score: 34.83 coord: 9..24 score: 60.88
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 8..71 e-value: 7.0E-22 score: 77.1
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 6..72 score: 30.195024
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 9..72 e-value: 2.98529E-22 score: 83.397
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 127..143 e-value: 2.7E-4 score: 30.2 coord: 171..187 e-value: 1.3E-5 score: 34.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 127..141 e-value: 6.6E-7 score: 29.1 coord: 171..186 e-value: 1.6E-7 score: 31.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 128..141 score: 11.070239
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 172..187 score: 11.053757
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 8..73 e-value: 7.3E-22 score: 88.6
None	No IPR available	GENE3D	4.10.60.10		coord: 120..157 e-value: 1.3E-6 score: 29.9 coord: 168..190 e-value: 1.8E-6 score: 29.4
None	No IPR available	GENE3D	2.40.50.140		coord: 1..71 e-value: 4.9E-24 score: 86.0
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..188
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 20..39
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 119..188
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009936.1	HG10009936.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding