HG10009921 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009921
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 14259713 .. 14259994 (-)
RNA-Seq ExpressionHG10009921
SyntenyHG10009921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTGCCTTGAAAAAATTAACAACATCGAAAACTCGGGGAAATCGGGAGCCCATCAATTTTGCTTGATCTCCAGAAGCATTTCCACCACCTTCTTCATTTTTGGCCTTTTGGCTGGTATGCTATCAGTGCAGAACAATGCAATCTTGAGAGCTGCAAGCATCTCCTTTCTCCAGCCAAATGACACTGTGCTCAGCCGGGAATCGAGTATCTGTTCGGTTGTTTGGCCCCTCGAAGGAGCACTATATGTTGAGAATATGAAAGGCTATAATATTGATTAG

mRNA sequence

ATGGCGTGCCTTGAAAAAATTAACAACATCGAAAACTCGGGGAAATCGGGAGCCCATCAATTTTGCTTGATCTCCAGAAGCATTTCCACCACCTTCTTCATTTTTGGCCTTTTGGCTGGTATGCTATCAGTGCAGAACAATGCAATCTTGAGAGCTGCAAGCATCTCCTTTCTCCAGCCAAATGACACTGTGCTCAGCCGGGAATCGAGTATCTGTTCGGTTGTTTGGCCCCTCGAAGGAGCACTATATGTTGAGAATATGAAAGGCTATAATATTGATTAG

Coding sequence (CDS)

ATGGCGTGCCTTGAAAAAATTAACAACATCGAAAACTCGGGGAAATCGGGAGCCCATCAATTTTGCTTGATCTCCAGAAGCATTTCCACCACCTTCTTCATTTTTGGCCTTTTGGCTGGTATGCTATCAGTGCAGAACAATGCAATCTTGAGAGCTGCAAGCATCTCCTTTCTCCAGCCAAATGACACTGTGCTCAGCCGGGAATCGAGTATCTGTTCGGTTGTTTGGCCCCTCGAAGGAGCACTATATGTTGAGAATATGAAAGGCTATAATATTGATTAG

Protein sequence

MACLEKINNIENSGKSGAHQFCLISRSISTTFFIFGLLAGMLSVQNNAILRAASISFLQPNDTVLSRESSICSVVWPLEGALYVENMKGYNID
Homology
[Close]
BLAST of HG10009921 vs. NCBI nr
Match: MCI31924.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 28 ISTTFFIFGLLAGMLSVQNNAILRAASISFLQPNDTVLSRESSICSVVWPLEGAL 83
          ISTTFFIFG LAG+LSVQ+NA  RAASISFLQP +TVLS  SSICS V PL GAL
Sbjct: 1  ISTTFFIFGRLAGVLSVQSNATFRAASISFLQPKETVLSLASSICSGVSPLTGAL 55

[Close]
BLAST of HG10009921 vs. ExPASy TrEMBL
Match: A0A392R755 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 28 ISTTFFIFGLLAGMLSVQNNAILRAASISFLQPNDTVLSRESSICSVVWPLEGAL 83
          ISTTFFIFG LAG+LSVQ+NA  RAASISFLQP +TVLS  SSICS V PL GAL
Sbjct: 1  ISTTFFIFGRLAGVLSVQSNATFRAASISFLQPKETVLSLASSICSGVSPLTGAL 55

The following BLAST results are available for this feature:
BLAST of HG10009921 vs. NCBI nr
Match NameE-valueIdentityDescription
MCI31924.11.9e-1178.18hypothetical protein [Trifolium medium][more]
BLAST of HG10009921 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A392R7559.2e-1278.18Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
BLAST of HG10009921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009921.1HG10009921.1mRNA