HG10009917 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009917
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIM-type domain-containing protein
LocationChr06: 13996697 .. 13997092 (-)
RNA-Seq ExpressionHG10009917
SyntenyHG10009917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAGACAAACAATTCATAGTGAAGTTAGACTTGGGATCTTGCAGTTTTCGAGTATGGGATTTTGAGGAAATTCCATGTGCACATGCACTTGCTGTTATTCGGATGCTTAATTTGGATAGTTATTCTTATGTATCTAAGTATTATTATTCAAGAATATTGTCAGAAACATATAAATGTTGTGTTCGACCAGTTGGAGTTCATTTAGATTGGAGGGTTGAAGATGATGTCATGAAAGCATTACCTCCTATTGTTCAACGTCAAGCTGGAAGACCTAAAAAACACAGGATTGTATCTATTGGTGAATTTAAAAGTTCATCAAAATGTAGTCGTTGTAATCGCAAAGGTCACAATAGTAGGACTTACAAACTTGAACCATTTAGTCAGATGTGA

mRNA sequence

ATGGATGGAGACAAACAATTCATAGTGAAGTTAGACTTGGGATCTTGCAGTTTTCGAGTATGGGATTTTGAGGAAATTCCATGTGCACATGCACTTGCTGTTATTCGGATGCTTAATTTGGATAGTTATTCTTATGTATCTAAGTATTATTATTCAAGAATATTGTCAGAAACATATAAATGTTGTGTTCGACCAGTTGGAGTTCATTTAGATTGGAGGGTTGAAGATGATGTCATGAAAGCATTACCTCCTATTGTTCAACGTCAAGCTGGAAGACCTAAAAAACACAGGATTGTATCTATTGGTGAATTTAAAAGTTCATCAAAATGTAGTCGTTGTAATCGCAAAGGTCACAATAGTAGGACTTACAAACTTGAACCATTTAGTCAGATGTGA

Coding sequence (CDS)

ATGGATGGAGACAAACAATTCATAGTGAAGTTAGACTTGGGATCTTGCAGTTTTCGAGTATGGGATTTTGAGGAAATTCCATGTGCACATGCACTTGCTGTTATTCGGATGCTTAATTTGGATAGTTATTCTTATGTATCTAAGTATTATTATTCAAGAATATTGTCAGAAACATATAAATGTTGTGTTCGACCAGTTGGAGTTCATTTAGATTGGAGGGTTGAAGATGATGTCATGAAAGCATTACCTCCTATTGTTCAACGTCAAGCTGGAAGACCTAAAAAACACAGGATTGTATCTATTGGTGAATTTAAAAGTTCATCAAAATGTAGTCGTTGTAATCGCAAAGGTCACAATAGTAGGACTTACAAACTTGAACCATTTAGTCAGATGTGA

Protein sequence

MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNSRTYKLEPFSQM
Homology
BLAST of HG10009917 vs. NCBI nr
Match: TYK07957.1 (hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 3.5e-43
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 2   DGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKC 61
           +G++QFIVKL++  CS RVWD EEIPCAHAL V+RMLNLD+YSYVS++YY   LSETY  
Sbjct: 202 NGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSETYNG 261

Query: 62  CVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNSR 121
           C++PVG H DWRV D VMK LPP+ +RQAGRP K RI S+ EF SS+KCS CNRKGHNSR
Sbjct: 262 CIQPVGSHFDWRVVDSVMKILPPVFKRQAGRPGKQRIPSVEEFNSSTKCSNCNRKGHNSR 321

Query: 122 TYK 125
           T K
Sbjct: 322 TCK 324

BLAST of HG10009917 vs. NCBI nr
Match: XP_038896605.1 (uncharacterized protein LOC120084863 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 88/131 (67.18%), Postives = 103/131 (78.63%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           MDGDKQF+VKL+  SCS +VWDFEEIPC+H L V+R+LN+D YSY+S YYYS  LS TY 
Sbjct: 574 MDGDKQFLVKLNFESCSLQVWDFEEIPCSHVLVVLRLLNMDIYSYISNYYYSSALSWTYM 633

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSS-KCSRCNRKGHN 120
            CVRPVGVH +WRV DD ++ALPPI +  A RPKK RI S+GE KSSS +CSRC+ KGHN
Sbjct: 634 GCVRPVGVHSNWRVLDDGIRALPPIFKHSARRPKKQRIPSVGEAKSSSLRCSRCHSKGHN 693

Query: 121 SRTYKLEPFSQ 131
           SRT KL   SQ
Sbjct: 694 SRTCKLHLISQ 704

BLAST of HG10009917 vs. NCBI nr
Match: XP_038904248.1 (uncharacterized protein LOC120090597 [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 89/131 (67.94%), Postives = 103/131 (78.63%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           MDGDKQF+VKL+LGSCS RVWDFEEI C+HAL ++ +LN+D YSYVS YYYS  LS TY 
Sbjct: 224 MDGDKQFLVKLNLGSCSCRVWDFEEISCSHALVILELLNMDIYSYVSNYYYSSTLSWTYL 283

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSS-KCSRCNRKGHN 120
            CVRP+GVH +WRV DD ++ALPPI +R AG PKK RI S  E KSSS +CSRC+ KGHN
Sbjct: 284 GCVRPIGVHSNWRVLDDDIRALPPIFKRSAGGPKKQRIPSKSEAKSSSLRCSRCHSKGHN 343

Query: 121 SRTYKLEPFSQ 131
           SRT KL   SQ
Sbjct: 344 SRTCKLRLISQ 354

BLAST of HG10009917 vs. NCBI nr
Match: XP_011654398.1 (uncharacterized protein LOC105435382 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 8.2e-37
Identity = 82/131 (62.60%), Postives = 98/131 (74.81%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           M GDKQ IVKL+LGSCS RVWDF EIPC+HAL V+ MLNL+SYSYVS YY+S+ L  TY 
Sbjct: 113 MVGDKQLIVKLNLGSCSCRVWDFHEIPCSHALVVLWMLNLNSYSYVSDYYHSQTLLSTYL 172

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSS-KCSRCNRKGHN 120
             V P+GVH +WR+ +D + ALPPI +R  GRPK  R+ SIGE  SSS +CS C+ KGHN
Sbjct: 173 GHVLPIGVHSNWRLVNDDIGALPPIFKRSVGRPKNLRVPSIGEVNSSSTRCSSCHGKGHN 232

Query: 121 SRTYKLEPFSQ 131
           SRT KL   +Q
Sbjct: 233 SRTCKLRQINQ 243

BLAST of HG10009917 vs. NCBI nr
Match: XP_038902433.1 (uncharacterized protein LOC120089079 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.4e-36
Identity = 75/98 (76.53%), Postives = 83/98 (84.69%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           MDG KQFIVKL+LGS SFRVWDFEEIPCAHAL V+RMLNLD+ SYV+ +YY R LS TYK
Sbjct: 31  MDGHKQFIVKLELGSSSFRVWDFEEIPCAHALFVLRMLNLDTCSYVADFYYRRTLSATYK 90

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRI 99
           CC RPV VHLDWR +DDVMK LP IV+RQ GRP+K RI
Sbjct: 91  CCARPVEVHLDWRAKDDVMKVLPSIVKRQVGRPEKQRI 128

BLAST of HG10009917 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.7e-43
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 2   DGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKC 61
           +G++QFIVKL++  CS RVWD EEIPCAHAL V+RMLNLD+YSYVS++YY   LSETY  
Sbjct: 202 NGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSETYNG 261

Query: 62  CVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNSR 121
           C++PVG H DWRV D VMK LPP+ +RQAGRP K RI S+ EF SS+KCS CNRKGHNSR
Sbjct: 262 CIQPVGSHFDWRVVDSVMKILPPVFKRQAGRPGKQRIPSVEEFNSSTKCSNCNRKGHNSR 321

Query: 122 TYK 125
           T K
Sbjct: 322 TCK 324

BLAST of HG10009917 vs. ExPASy TrEMBL
Match: A0A5D3BVP4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00470 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 75/127 (59.06%), Postives = 90/127 (70.87%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           +DG K F+VKL+  SCS   WD EEIPCAHAL VIR LNL+ Y++VS+YYY+ +LS TY 
Sbjct: 81  VDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYG 140

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNS 120
             VRP+G H DW V +     LPP+ +R AGRP+K RI SIGE   SSKCSRC R GHN 
Sbjct: 141 GLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRRIPSIGEVSKSSKCSRCKRDGHNI 200

Query: 121 RTYKLEP 128
           RT + EP
Sbjct: 201 RTCRFEP 207

BLAST of HG10009917 vs. ExPASy TrEMBL
Match: A0A5D3BD68 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00090 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 74/127 (58.27%), Postives = 88/127 (69.29%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           +DG K F+VKL+  SCS   WD EEIPCAHAL VIR LNL+ Y++VS+YYY+ +LS TY 
Sbjct: 480 VDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYG 539

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNS 120
             VRP+G H DW V       LPP+ +R AGRP+K RI SIGE   SSKCSRC R  HN 
Sbjct: 540 GLVRPIGNHTDWSVVGVNDNILPPVFRRPAGRPRKRRIPSIGEVSKSSKCSRCKRASHNI 599

Query: 121 RTYKLEP 128
           RT + EP
Sbjct: 600 RTCRFEP 606

BLAST of HG10009917 vs. ExPASy TrEMBL
Match: A0A5A7TVL2 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00860 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.4e-34
Identity = 74/127 (58.27%), Postives = 88/127 (69.29%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           +DG K F+VKL+  SCS   WD EEIPCA AL VIR LNL+ Y++VS+YYY+ +LS TY 
Sbjct: 148 VDGGKNFLVKLNCNSCSCLFWDLEEIPCARALIVIRSLNLNPYAFVSQYYYATVLSATYG 207

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNS 120
             VRP+G H DW V +     LPP+ +R AGRP+K RI SIGE   SSKCSRC R GHN 
Sbjct: 208 GLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRRIPSIGEVSKSSKCSRCKRAGHNI 267

Query: 121 RTYKLEP 128
           RT   EP
Sbjct: 268 RTCTFEP 274

BLAST of HG10009917 vs. ExPASy TrEMBL
Match: A0A5D3BEQ2 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00400 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.0e-34
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 1   MDGDKQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYK 60
           +DG K F+VKL+  SCS   WD EEI CAHAL VIR LNL+ Y++VS+YYY+ +LS TY 
Sbjct: 81  VDGGKNFLVKLNCNSCSCLFWDLEEISCAHALIVIRSLNLNPYAFVSQYYYTTVLSATYG 140

Query: 61  CCVRPVGVHLDWRVEDDVMKALPPIVQRQAGRPKKHRIVSIGEFKSSSKCSRCNRKGHNS 120
             VRP+G H DW V +     LPP+ +R AGRP+K +I SIG+   SSKCSRC R GHN 
Sbjct: 141 GLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRKIPSIGKVSKSSKCSRCKRDGHNI 200

Query: 121 RTYKLEP 128
           RT + EP
Sbjct: 201 RTSRFEP 207

BLAST of HG10009917 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 47.8 bits (112), Expect = 8.0e-06
Identity = 25/83 (30.12%), Postives = 40/83 (48.19%), Query Frame = 0

Query: 5   KQFIVKLDLGSCSFRVWDFEEIPCAHALAVIRMLNLDSYSYVSKYYYSRILSETYKCCVR 64
           +++IV+L++ +C+ R +   + PC HALAV   L ++   YV + Y      +TY     
Sbjct: 632 EEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFS 691

Query: 65  PVGVHLDWRVEDDVMKALPPIVQ 88
           PV     W  +  V    PP  Q
Sbjct: 692 PVPDVAAWPEDCRVPTLFPPSQQ 714

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07957.13.5e-4369.11hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa][more]
XP_038896605.11.0e-4267.18uncharacterized protein LOC120084863 [Benincasa hispida][more]
XP_038904248.12.2e-4267.94uncharacterized protein LOC120090597 [Benincasa hispida][more]
XP_011654398.18.2e-3762.60uncharacterized protein LOC105435382 [Cucumis sativus][more]
XP_038902433.12.4e-3676.53uncharacterized protein LOC120089079 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7L71.7e-4369.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVP41.3e-3559.06SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BD681.4e-3458.27SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TVL22.4e-3458.27ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BEQ27.0e-3456.69SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
AT1G64260.18.0e-0630.12MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 14..41
e-value: 6.2E-5
score: 32.4
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 9..39
e-value: 5.0E-4
score: 19.7
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 7..39
score: 8.815006
NoneNo IPR availablePANTHERPTHR31973POLYPROTEIN, PUTATIVE-RELATEDcoord: 8..122
NoneNo IPR availablePANTHERPTHR31973:SF141FAMILY TRANSPOSASE, PUTATIVE ISOFORM 1-RELATEDcoord: 8..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009917.1HG10009917.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding