HG10009908 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009908
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 13469769 .. 13470583 (-)
RNA-Seq ExpressionHG10009908
SyntenyHG10009908
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGTACCAGCCAAGACAGAGAGGACTTTGATCAAGTTTTTCACTCGTAACGTGTGCGAGTTAGGATGTCTCCTCGACCTTAGCGATATAGGAATTGTCTCAAGGAGACGATTGAAGCCTTGGAAACGGGAATGGGCGAATTAGATCTCCAAAACCCGACACCAAAGAAATTAAAGGTTTTCAAGCACAAACTAAAGCAATAGACGAGGCAAGCAAAGTTGAAGTAGAGCAAGGTTATGTGGCTGAGGCCAAACCTAGGGTTTTCAAAGAAGGCGAGCCTAAGTCAATAGGGGTTCCAAATTTCATGAAAAAGAGAGCAAAGCAAGTGTATCCGCCCAAGGCCGAGGTCCAGGCCAACCCTAGGGTTTTCAAAGAAGGCGAGCCCAAATCAAAAGAGGTTCCTAATTGCGTGAAAAAGGAAGTAAAGCAGGGTTGTTCAGCTGAGGCAGAGGCTGAGGCCGACCCTAGGATTTTCAAGGAAGGCGAACCCGAATCAAAAGGAGTTTCCAATTTCATGAAAAAGAGAGCAAAGCAAGGGTATTCGGCCAAGGCCGACCCTAGGGTTTTCAAAGAAGGTGAGCCCGAATCAAAGGAAGTTCCTAATTGCGGGAAAAAGGAAGCAAAGAAGGGTCGTTCGGCTGAGGCCGGCCCTAGGGTTTTCAAGGAAGGAGAGTTCAAATTAAAATGGGTCCCCAATTTCGTGAAAAGGGAAGCAAAGCAGGATTTTTCGATTGAGGCGGAGATCGACCGTGACATTTTTAAGGAAGGCAAGCTTGAATCGAAAAGGGTTCCCAATTCCGTGGGAAAATGA

mRNA sequence

ATGACAAGTACCAGCCAAGACAGAGAGGACTTTGATCAAGTTTTTCACTCATCTCCAAAACCCGACACCAAAGAAATTAAAGGTTTTCAAGCACAAACTAAAGCAATAGACGAGGCAAGCAAAGTTGAAGTAGAGCAAGGTTATGTGGCTGAGGCCAAACCTAGGGTTTTCAAAGAAGGCGAGCCTAAGTCAATAGGGGTTCCAAATTTCATGAAAAAGAGAGCAAAGCAAGTGTATCCGCCCAAGGCCGAGGTCCAGGCCAACCCTAGGGTTTTCAAAGAAGGCGAGCCCAAATCAAAAGAGGTTCCTAATTGCGTGAAAAAGGAAGTAAAGCAGGGTTGTTCAGCTGAGGCAGAGGCTGAGGCCGACCCTAGGATTTTCAAGGAAGGCGAACCCGAATCAAAAGGAGTTTCCAATTTCATGAAAAAGAGAGCAAAGCAAGGGTATTCGGCCAAGGCCGACCCTAGGGTTTTCAAAGAAGGTGAGCCCGAATCAAAGGAAGTTCCTAATTGCGGGAAAAAGGAAGCAAAGAAGGGTCGTTCGGCTGAGGCCGGCCCTAGGGTTTTCAAGGAAGGAGAGTTCAAATTAAAATGGGTCCCCAATTTCGTGAAAAGGGAAGCAAAGCAGGATTTTTCGATTGAGGCGGAGATCGACCGTGACATTTTTAAGGAAGGCAAGCTTGAATCGAAAAGGGTTCCCAATTCCGTGGGAAAATGA

Coding sequence (CDS)

ATGACAAGTACCAGCCAAGACAGAGAGGACTTTGATCAAGTTTTTCACTCATCTCCAAAACCCGACACCAAAGAAATTAAAGGTTTTCAAGCACAAACTAAAGCAATAGACGAGGCAAGCAAAGTTGAAGTAGAGCAAGGTTATGTGGCTGAGGCCAAACCTAGGGTTTTCAAAGAAGGCGAGCCTAAGTCAATAGGGGTTCCAAATTTCATGAAAAAGAGAGCAAAGCAAGTGTATCCGCCCAAGGCCGAGGTCCAGGCCAACCCTAGGGTTTTCAAAGAAGGCGAGCCCAAATCAAAAGAGGTTCCTAATTGCGTGAAAAAGGAAGTAAAGCAGGGTTGTTCAGCTGAGGCAGAGGCTGAGGCCGACCCTAGGATTTTCAAGGAAGGCGAACCCGAATCAAAAGGAGTTTCCAATTTCATGAAAAAGAGAGCAAAGCAAGGGTATTCGGCCAAGGCCGACCCTAGGGTTTTCAAAGAAGGTGAGCCCGAATCAAAGGAAGTTCCTAATTGCGGGAAAAAGGAAGCAAAGAAGGGTCGTTCGGCTGAGGCCGGCCCTAGGGTTTTCAAGGAAGGAGAGTTCAAATTAAAATGGGTCCCCAATTTCGTGAAAAGGGAAGCAAAGCAGGATTTTTCGATTGAGGCGGAGATCGACCGTGACATTTTTAAGGAAGGCAAGCTTGAATCGAAAAGGGTTCCCAATTCCGTGGGAAAATGA

Protein sequence

MTSTSQDREDFDQVFHSSPKPDTKEIKGFQAQTKAIDEASKVEVEQGYVAEAKPRVFKEGEPKSIGVPNFMKKRAKQVYPPKAEVQANPRVFKEGEPKSKEVPNCVKKEVKQGCSAEAEAEADPRIFKEGEPESKGVSNFMKKRAKQGYSAKADPRVFKEGEPESKEVPNCGKKEAKKGRSAEAGPRVFKEGEFKLKWVPNFVKREAKQDFSIEAEIDRDIFKEGKLESKRVPNSVGK
Homology
[Close]
BLAST of HG10009908 vs. NCBI nr
Match: MBQ6594040.1 (hypothetical protein [Clostridia bacterium])

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-04
Identity = 54/185 (29.19%), Postives = 86/185 (46.49%), Query Frame = 0 

Query: 51  EAKPRVFKEGEPKSIGVPNFMKKRAKQVYPPKAEVQANPRVFKEGEPKSKEVPNCVKKEV 110
           EA+P V +E EP+            ++   P+   +A P V +E EP+ +E     + EV
Sbjct: 809 EAEPEVREEAEPE-----------VREEAEPEVREEAEPEVKEEAEPEVREE---AEPEV 868

Query: 111 KQGCSAEAEAEADPRIFKEGEPESKGVSNFMKKRAKQGYSAKADPRVFKEGEPESKEVPN 170
           K+    E + EA+P + +E EPE       +K+ A+     +A+P V +E EPE KE P 
Sbjct: 869 KEEAEPEVKEEAEPEVREEAEPE-------VKEEAEPEVKEEAEPEVKEEAEPEVKEEPK 928

Query: 171 CGKKEAKKGRSAEAGPRVFKEGEFKLKWVPNFVKREAKQDFSIE--AEIDRDIFKEGKLE 230
             +KE  K    E  P+  ++ E K +     VK E K +   E  AE+  +    G  +
Sbjct: 929 AEEKEEPKAEEKEE-PKAEEKEEPKAE-----VKEEPKAEVKEEPKAEVKEEAVPSGSAD 966

Query: 231 SKRVP 234
            +  P
Sbjct: 989 DRTDP 966

The following BLAST results are available for this feature:
BLAST of HG10009908 vs. NCBI nr
Match NameE-valueIdentityDescription
MBQ6594040.19.8e-0429.19hypothetical protein [Clostridia bacterium][more]
BLAST of HG10009908 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009908 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009908 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009908.1HG10009908.1mRNA