HG10009871 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009871
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transmembrane protein 50A-like
Location	Chr06: 12444622 .. 12444927 (+)
RNA-Seq Expression	HG10009871
Synteny	HG10009871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTTTTTTATTCATTTGCGAGTCCACGCCATGTATAATTTGCGCTTAGGGTTTTTGACGGTGCTCCGGTATTGGGGTTGCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGA

mRNA sequence

ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGA

Coding sequence (CDS)

ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGA

Protein sequence

MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR

Homology

[Close]

BLAST of HG10009871 vs. NCBI nr
Match: XP_022963347.1 (transmembrane protein 50A-like [Cucurbita moschata] >XP_022991142.1 transmembrane protein 50A-like [Cucurbita maxima] >XP_023517110.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo] >KAG6602062.1 Transmembrane protein 50A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. NCBI nr
Match: KAG7032755.1 (Transmembrane protein 50A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFIHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. NCBI nr
Match: XP_004140320.1 (transmembrane protein 50A [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 6.7e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. NCBI nr
Match: KAA0067394.1 (transmembrane protein 50A [Cucumis melo var. makuwa] >TYK26535.1 transmembrane protein 50A [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 6.7e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. ExPASy TrEMBL
Match: A0A6J1JKY2 (transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. ExPASy TrEMBL
Match: A0A6J1HF20 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111463579 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. ExPASy TrEMBL
Match: A0A5D3DT37 (Transmembrane protein 50A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001240 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. ExPASy TrEMBL
Match: A0A0A0KQ70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387940 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of HG10009871 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-35
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
          MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V F+HYLPGIFAS  ALMFNCVRK
Sbjct: 1  MDLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPY+EGEWR
Sbjct: 61 EDIDYSPYDEGEWR 74

The following BLAST results are available for this feature:

BLAST of HG10009871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963347.1	3.0e-36	100.00	transmembrane protein 50A-like [Cucurbita moschata] >XP_022991142.1 transmembran...	[more]
KAG7032755.1	3.0e-36	100.00	Transmembrane protein 50A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038874577.1	5.1e-36	98.65	transmembrane protein 50A [Benincasa hispida]	[more]
XP_004140320.1	6.7e-36	98.65	transmembrane protein 50A [Cucumis sativus]	[more]
KAA0067394.1	6.7e-36	98.65	transmembrane protein 50A [Cucumis melo var. makuwa] >TYK26535.1 transmembrane p...	[more]

BLAST of HG10009871 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JKY2	1.5e-36	100.00	transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 ...	[more]
A0A6J1HF20	1.5e-36	100.00	transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111463579 PE=...	[more]
A0A5D3DT37	3.3e-36	98.65	Transmembrane protein 50A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KQ70	3.3e-36	98.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387940 PE=3 SV=1	[more]
A0A1S3CCJ8	3.3e-36	98.65	transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1	[more]

BLAST of HG10009871 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36980.1	2.1e-35	85.14	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007919	Uncharacterised protein family UPF0220	PFAM	PF05255	UPF0220	coord: 13..64 e-value: 6.9E-9 score: 35.5
IPR007919	Uncharacterised protein family UPF0220	PANTHER	PTHR13180	SMALL MEMBRANE PROTEIN-RELATED	coord: 3..74
None	No IPR available	PANTHER	PTHR13180:SF3	OS02G0566900 PROTEIN	coord: 3..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009871.1	HG10009871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0016021	integral component of membrane