HG10009864 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009864
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
LocationChr06: 12249276 .. 12257236 (+)
RNA-Seq ExpressionHG10009864
SyntenyHG10009864
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACATTCTGCAAATGTGGGAAGAGATCGGTGGTCTCCTCCGGTTGTTGGAAGTCTTAAACTCAAAGTGAGGTCAGGGGCTATCATCCGCGACTCGTCTGGGGTGGTGGTGGTTGCTTCTTCTCATTTTCTTCTTTATCAGTTGGAGTCCTTTGCAGCGGAGGCTTTGGCCCTTCTTCACGGACTGAAGCTGGTTCGACATTGGGGGTTAGTGAATGTTCCTGTTGAAGCTGATGCTCAAGCGCTCGTCAAAGCCATTTCTGAGAATAGTATGAAATGCTCCCCTTATGGTACAATTTTAAATGAAATAAGGTGTTTGTTGTCTTTGGATATGATTATTAGTCTAAAGTACATTTCTAGATCTATTAACCATGTAGCTCATAATTTATATAGCTACTTGTGAGGTGTGGGTTGAAAGCCCACCTCTTTGGTTGTTGTCATCTTTATCTATGAATACTTCTTTTTGTAACCCAAATTTTGAGTCTAATGCTTAATGGTTTATTTTTGCCATTGAACAATTGGCTCCTCCAACCAATGTGAAAGGAGTTAGAAGCTTTACGAGACATGCAAGGTTTTATAGGAGGTTTATTAAAGACTTTTAAAAAATTGCTAAACTCTTGAGTAGTTTGTTAGAAAAAGATGTTATATTTGTGTTTGATAATCTATGTCTACTAACTTTCCATTATTTGAAAGAGAGATTGATTTATGCACCTGCAATTGTTGTACCTGATTAAAGTCAATCTTTTGAGATTATTTGTGATGCTAGTGACTATGCATTAGGTATTGTTTTAGGCCAACGTAGGCCTAACTTGTTTAGGGTTATTTACTATGTTGGTAAAACCTTGAATAATGCTCAACTGAATTACACTACTACTGAAAAGGAATTACTAGCTGTTGTATTTTCCTTTGACAAGTTTAGGCCCTATCTTTTAGGTTTTAAGGTTATTGTGCATATTGACCATGCTATTTTGAAATTCTTATTTTCTATGAAAGATGCTAAACCTAGATTGATCAGATGAGTTTTATTATTGTAGGAATTTGATTTATTGTAAAGGACAAGAAAGGATATGAAAATGTGGTAGTTGGCCACTTGTCCAAGCTTGAGAATGGGAATGAATAAAAGAGTTAACCTGTCACCAAAGAGTTTCCTAATGAACAACTGTATAAGGTACATCATAGTTTGCCTTGGTATGCTGACATAGTTAACTATCTTGCAGAAGGCCTTCTACCACCTTACTAAAACTCTCAACAGAAGAAGAGGTTTTTGCACAATGTTAGATTCTACCTCTGGGAAGACCCACTTCTATTCTAGGTTTGTTCAAACCACATCATAAGAAAGTGTATGCCCCATGAGGAGGGCGGTAATATACTAGCTTCTTGTCATTCTTCACCATATAGAGGTCATTTTGGATGAACTAAAACAACTAAGGTATTGTAATGAGGTTTTTATCGGTCCTCTTTTTTTAAGGACTTTTATACATTTGTGAGATCTTGTGATAGGTGCCAATGTACTGACAATATTTCCAGACAACATGAGCTACCTTTGACTACCATATTGGAGGTGGAGATCTTTGATGTCTGGGGCATTGACTTTATGGGGTCTTTCCATCCCTCAGACGATTATCTGTATATTCTAGCTGTTGTAGATTATGTCTTTAAGTGGGTAGAGGCTATAGCCACTAGGACTAATGATTCTCACACTATATTGAAATTTTTGTACAAGCATGTAATTACACATTTTGGCACACCATGGGCTATTATTAGCAATGATGGGTCTCACTTTTGTAATAAGTTGTTTAAAACTATGATGAATAAATATGGTGTCAAGCATAAGATTGCTACAACATACCATCCTCAAACTAATGGTCTTTCTAAGATATCTAACAGGTCAATCAAGCTAATCTTGGAGAAGACGATTCGATTGAATAGGAAATATTAGGCCCTTAAGCTCGATGATGCATTGTGGGCCTACTATACAACTTTCAAAACTCCAATTGGTACTTCACTGTACAACTTGGTGTTTGAAAAGGCTCATCACTTACCAGTAGAGCTCAAGCATATAGCTTATTAGGCCATCAAGAAGCTTAACATGGACCTGTAGAAGGTAGGAGAAAACCAACCCTTAGAACTCAATAAAATGGATAAGTTCCATGCTCAAGCATATGAGAATGCTAAACTTTATAAGGAGCGCACTGCAAGATGGCATGACTAAAGGATCACTCCTAGGACATTCTTACCTGGACAGAGGGTTTTATTATTTATCGTTTACGCAGGTAAATTGAGGAACAGATGGTCAGACTCTTTTGTGATTAAAGCGGTATTTCCCCATGGAGCAGTGGAGTTACAAGTAGAAAATGGATCAATGTTTAAAGTATATGGTTAGAGACTTAAGCACTACTGTGGTGATGAAGAATGAGGTTTCGAGAACTTGGTATTTAAAGAATGATTATGTGATTTTGTCCAGCTAGAGACGTTAAACCAAGTGCTTCTTAGAAGGCAACCCAAGTTTACTATTTTTAGTTTATTTTAGCATGATTATATTTTTCTAGATGGAGCCACTCTTCTAGTTATCAATTTTTTTTTTTTTGCAGAAATAATGTAAATTACAAAAGTACTCATTTAGCTAGCCTCTTTGGTGGATTCACGCACACTCCTAAGCTTATATCACCTTTTTTTTAGTAACTGTTCTATTCTTTTTCAATTGGGGACAATGCATAGTTCTAAATTTGGGATGGGAGGCATACTTTGTACTTTTGTGTTTTTTTTTACCCTGCTATGCATGTTAATGATGTTTTATGAATGTTATGCATGCTAATTTGATTGTGTTGAAAATTCATTGAAAATTTTTCGATTTGTGAATAGAAAAGATGATGAGAAATTCTATTTGCATGCTTTTAATGATGATTGTTTATGATTTATTTTGAATATGCATCTTAGATGATCTGCTGTAGAAATAAGATAACATACTCTTGAGTCATGATCTATTCAAGTTCTTCTTGCAGTCTCCAATATTATGAGCATGTAGTCACTTTAATTTAGAAACCTTAACTAAGAAAGAAGTTAATTTGAGTCTATTTGGTTGTCACCTCGAAAGGCCCTACTGGTTAGAGAGTTGTCTTGTGTTGCTTTATTCTCGATTAAATATTTCTTTTTCTTTTAGACTTCTTCGATGATTATGCTTGTGATTCGCTAGATTATTAGCAATTCAAGTTTTCCTAAATATCAATCCAAGTATAAACTGATACCAGGTTATCTTGGTGAGAACCAAGGTCGAACACATGGATTTTTATGTGACTAATACTTTGCTTACAATGAAGATCTCGAGGACAAGGGAAATAATTTGAGGAATTGTGAACAAAACTAACTTAAATGTTTGAAAAACAACTAAATGGGAGTGTCAGATCAATAATGGAATTTCAGTGGAATGAGTGATAAAGAAGAAGAGTGTTGGAGACTGTCATTCATCAAATTGTCAAATATCCATCTAAGTATACTGATCAAACCTTCAAACACCATTGGTTCATACCTGTCGGCAGAAAAGCCACACTAGTCATATATCTATGATGCGTGCCAGTTTGAAAGGCTCTAAGGCAAAGCTTATATCTAAGATTGTCCTATGAGCTACAGTGATATAATCAATAATGACTTACTCTGTCAAGCAGTCGACAAAAGAATACACTCATGTGAATGATCAAGGGATTAAGTTTAATTTCAACAATATGGATGAACACAGTCCCAACCCTCGTGGAGGTTTTAGCTACTCATACTAGCAACGGAAATGTATATGAATAGAGGGTTCAACAATGAATAGAAAGTTTCAGAGAATTAATCGTGTAACGAAATTGTGATTATCAAATTAACAACAGATCAAATCTCTAAACAAACAATAAGCACTATGATGATGAGAGAAATGAAAAGAGAGAAGCTGCAGGCAAGAATGTCTAGCTCGACGACAGATCTATATTGATGCTGAGATTGCAAGTGGTAGATGAAGATGGCGACGAAGTCTTCGTCTCTCTCGAGCCTCAGTCCGTCGCCCGTGGATGTGTAGCGTAATCTCTACAGCCGTCGCTGTGAGTACCGAAAATGGACTGGTGTGCAGTGGCGTCTCCCCAAAAGAATGATTTCTGATTACCCTAATTTTTCTTCTCCCTTGCTTTTATAGGCGTCATTATGGTACCTTCTATCTTTGGTGCAGGACGGGACCACAACGCGTTTGGCTCTGTCTTTCCTGACCGCGCGTCCCGCTTCCGTCTAACGGTTTATAGTACCGAAGATTTACCACAGCTGTCATGGTTGGCTTTTTCTCTCTGCTGGCCATGCGTTGATGTGTCTTCGCCGCATGGTTGCGATAGTGTTTTTCTGCACAAATAGCGCACAAGGGTTGTTAGTTCTTAACAATAAGATCTCTTATTTTCTTTTCACGCACTCACGCGTGTTATGCGAATACATTAAAGAATCATGCGCTAAAATGCTCTTCTTTTCACTAATCTTTCATTTATGCTAAGAAAAAGAAGTAAAATAACTTGTATTTCTACGAGTTATCATCTTGCATGATGGTTTGTAGTGTTATACTAAGAGAAAAGTAAAAGATTTTATTCGCCTACTAAAAAAGACATTTGTGCACAAGAGATTGAGTGGAACAAAAGAATATCAAAAGAAAGAGATTTGAAAAAAATAAATAAACTTGTAATGTGTACACATGGATAAAGGTAAAAAAGAGCTACCTTTGCTGTAATCAGTTAGGTTGTCCATGAAAATTTTGGGTATGAGTCTCCCTATGGTGAATGTGTGAAAGCTAGTGCCCCTAGGTAAAAGAATGCAAGTTTAGGACCCTTAGAATGTGATGTTTCAAGCACCTTAATTGATATATTATTTCTTGAATGTCTTGATGCTTAATCATTGGTGCATGAGCCAAAGTAGGGGGAAAACTGAAGAAGCTCTTTTAAGTCTAAATTTTAGTTTCTGAGTTTTGAATTGAATGTGACTTACACACACACATGGGGATGAAAAGATTCAACCTTGAAATTTCCTAATAAGAGATGTGTTTGAATGTTTTTACTTATAGATTTAACATGTTACTCTTAATATATTGAGGTTTGAATCACTAGTATGTTTATTTTGAACTTCTCTCAGTCTTGTTCTATTTTTGCTCAGGACTAGCAAAATTCTAAGTTTGATGTGACGAAAAAGTACTTTTCAAGTGCTTTCTTTGCCTTTTATTTAGAGTTATTTTTGTTCTATTTTGTTAGATTTGATGTCGTTTGCTAGTGACTTTCAAGAATTGAGCAAAAGAATGGGATTTTACGTTCAAAAGAGTTACAACAGACCAATTTTGCCTTAGAAAGTCAAGAAGAAACTAAAACTCCAAAAAGAGGGAAGAAAATAAGGCTATTCTGCCCAAATTGGGGGCTGCCACGGCACTATGCACGGCGCCCCAACCGAGAGCACGACTTTGGAGAGTGCTGCAATGTCATGAGAGACTGCTGCAACGCTAGCCAAGGGCATTGTAGCGCTAGAAACAACGTTGTAGCATCATGACTTCTTTCATGCACGCATGTTGCCCATTGAACTGCAACGTTGCAACAAGGCAATGTAGCGTTGCCTTGTGGCGTTGCGACACCCGTTTTCCTTTTTTATAAAATCTTGTATTGTTAGAAATTTTTCTTTGTAAAACCTAGGGTTTTCTAGCTAATTTAGACACAAAAGTTTAGAGCCTAAGAGTGAGTTGTGCTGTAAAATACAGTTGAGAGAGCGAGGGAATTGCTTAGAAAATTGTTCGTGATACCAAGGTGCAAATCAAGGCTTGGCGGGCATTCTTCAACAATAATTTTTCCCTAGTCTTTTCATTCACTTTGCTTCTTATGTTTGTTAAAGTGTATGTAAATATGTTGTTGACAACTATGAGTGGCTACACTTGTTTGTTGTAGGGTATTGATGAACTTGTTTAAGGATTTAAGTTAATGCATAGTATTTTTATGGAAATTCTGGAATTGAATGGTTTCAATGCTATTGTGCTTTTGTTTATATTGGTTGGCCATTGATACATGTTCAGTTGAATGTTCAATTTGATAGATTGTATGTTTAACTAAACCTATAACATTGAATCATTGTTAATCTCTCATGAAAATATTTAGGTTAATAATGAAAGTTGCTTATGACTTTGCTTAATGCCATACTTCTTATTCTAGTTTTGAAAATTTGTAGAAATACAAGTTATTGATGCTTCTTAGATTAGAATAATTAGGAAAATTCAGTGAAAAATATAATAACTTGAGAAGAAATTCATACAAAAGATCATCTTTACATATAACACTTGCAAAAACTATTTATCCTAAAATGTTGCAATTCTAACTACGGTAAACGCAGGATTTGGAATACAAAAGAACTTGAACTTGTCAAAGAAAGATGTGGAACATGTTGAATGCATAAGAAGACCAGATAGCGTAACCATGCGACGAAAGCAGAATCATGCGGTAAAAAAATTGATGTCAAATGCATGGGTGACAACACATCAAGTCCGGCAAGTTGCAAACTATTTGAAAGGTATGTGGCAAATTCAATGAACTGATGACAACGGCAGAGCTGGGTATGGAATTAAATATAAAGTTTGTCAGAAAATCATTAAAGAGAGCTCTAAAGAAGGATCAACTGAAACAATAAATAGCCGAAGTCTCACACATTTGAGAGGTTCTTCTTTAGCCCAAATTTTTGAAAGAAAATAAGTCTTTATCATTTTCTTATCCAACTCTCTGGTTCTTCTACTTCTGTAGTGCTTGAAACACACCTAAATTCTGCGTTATTTGCCTTTTATTTAGAGATACTTTTATTTAATTTAATATTTTTTGCAAGTAGTTTTTAGGTAATAATGAAGAAAATAAGTTGTGGAAGTCAAAAGAACCATACCAAGCCAAAATCGGGTGAAAAAGTGAAGAAAAAGGGTAAAAACCTTAAAATAGGGCAGCGCTAAGACAACGCTAAAACCCGAGGGCATCAGTTGATATAGTCGAGAGTAGTTACGGTGCTATTGGAAGTGTCGTAGCGCTAGGCAAGGAGTGTTGTAGCGCTTGCACGACACTGCGGCCGAGGGTAGCCTTTTATGACGCACAACGCCGCGACGCCAACTTTTCTAAATTGAAAAATCCTGCATTTTTGGAAAGTTCTTGGGTTGCAAGTTTGAATAATTCAATAAACTAGAAGATGTTCAGTAGCCCTAAGGACGAAATTCAAAGGGAATTAAAACGCACCTAGATTTAATGTTGTTTGTTAGTCGTTTTCAAGTATTAACGAGGAAAATAAGTTGTAAAAGTCAAAAGAACCAAACCGAGCCAAAATTTAGGGGAGCGTAGTGCAAGAGCATAGTTACGTTACCCCTTTAAACTCTAGACCCAAGAGTAAGGAATTCTAGCAGCTGGAAGAGCGCGGTGCAATGATGCTCATAAGAGCACAGCGCTACACTGCGACAAACACTACAACAAATTAGGCCTTCAGTGTCGGTCCAAAAAATTGGACACGGATCTTTAATGTCAGGCCAAGTGAAAAAAAAAACGGATCTTTAATGTCGGTTTTCGACTGACATTAAAGATACATTAAAACGGATCTTTAATGTCGATTTTCAACTGACATTAAAGATCCTCCAAAAAATTTCCCAAATTTAATTTTCTTTTTGTAAAGATCCAAAATGCTCTCTCTCTCCCACACTTCAACATATTTTTCTCTCAAATAGGGTTTGTGCTCGTGGTCGTCGCTGCTGTCCAGCCATTACCGTTCAGCCATCGTCGTTGCGTGGAGCAGCAGTGGGCCGTCGCTGTCGTTGCCGTCGTGCAGTCGAGCATTCATGGAGCGTCGTCGTGCTGGAGCAGTCTCGTCCGTACCGTCGCTGCTGTTGCCGTTGCTGTCGTGCCATCTCGTCCAGCCGCCGGATCTGTCCAGTTCATCCCGGATCTCACAAATCTAGTCTAG

mRNA sequence

AGACATTCTGCAAATGTGGGAAGAGATCGGTGGTCTCCTCCGGTTGTTGGAAGTCTTAAACTCAAAGTGAGGTCAGGGGCTATCATCCGCGACTCGTCTGGGGTGGTGGTGGTTGCTTCTTCTCATTTTCTTCTTTATCAGTTGGAGTCCTTTGCAGCGGAGGCTTTGGCCCTTCTTCACGGACTGAAGCTGGTTCGACATTGGGGGTTAGTGAATGTTCCTGTTGAAGCTGATGCTCAAGCGCTCGTCAAAGCCATTTCTGAGAATAGTATGAAATGCTCCCCTTATGGGTTTGTGCTCGTGGTCGTCGCTGCTGTCCAGCCATTACCGTTCAGCCATCGTCGTTGCGTGGAGCAGCAGTGGGCCGTCGCTGTCGTTGCCGTCGTGCAGTCGAGCATTCATGGAGCGTCGTCGTGCTGGAGCAGTCTCGTCCGTACCGTCGCTGCTGTTGCCGTTGCTGTCGTGCCATCTCGTCCAGCCGCCGGATCTGTCCAGTTCATCCCGGATCTCACAAATCTAGTCTAG

Coding sequence (CDS)

AGACATTCTGCAAATGTGGGAAGAGATCGGTGGTCTCCTCCGGTTGTTGGAAGTCTTAAACTCAAAGTGAGGTCAGGGGCTATCATCCGCGACTCGTCTGGGGTGGTGGTGGTTGCTTCTTCTCATTTTCTTCTTTATCAGTTGGAGTCCTTTGCAGCGGAGGCTTTGGCCCTTCTTCACGGACTGAAGCTGGTTCGACATTGGGGGTTAGTGAATGTTCCTGTTGAAGCTGATGCTCAAGCGCTCGTCAAAGCCATTTCTGAGAATAGTATGAAATGCTCCCCTTATGGGTTTGTGCTCGTGGTCGTCGCTGCTGTCCAGCCATTACCGTTCAGCCATCGTCGTTGCGTGGAGCAGCAGTGGGCCGTCGCTGTCGTTGCCGTCGTGCAGTCGAGCATTCATGGAGCGTCGTCGTGCTGGAGCAGTCTCGTCCGTACCGTCGCTGCTGTTGCCGTTGCTGTCGTGCCATCTCGTCCAGCCGCCGGATCTGTCCAGTTCATCCCGGATCTCACAAATCTAGTCTAG

Protein sequence

RHSANVGRDRWSPPVVGSLKLKVRSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLPFSHRRCVEQQWAVAVVAVVQSSIHGASSCWSSLVRTVAAVAVAVVPSRPAAGSVQFIPDLTNLV
Homology
[Close]
BLAST of HG10009864 vs. NCBI nr
Match: KAF4379885.1 (hypothetical protein G4B88_021018 [Cannabis sativa])

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-08
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 0 

Query: 2   HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLES 61
           HS       WSPP  G+ K+   +           G +IRD  G+VVVA + ++   L  
Sbjct: 312 HSLKKAPVSWSPPPSGTFKINTDASLIAGQPGCGLGVVIRDHLGIVVVAETVYIPGCLSV 371

Query: 62  FAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLP 117
             AE+LA+  GL L   W L ++ + +D Q ++ A++  +   S +G +LV +A  +P  
Sbjct: 372 NMAESLAIHSGLLLANRWSLSSICISSDCQPVIHALNGENHSISDWGLMLVGLACSRPQR 431

[Close]
BLAST of HG10009864 vs. NCBI nr
Match: XP_037439691.1 (uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides])

HSP 1 Score: 64.7 bits (156), Expect = 9.0e-07
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 0 

Query: 10  RWSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALAL 69
           RW  P  G +KL V            +GA++RDSSG  + AS  F  Y ++  + EALAL
Sbjct: 299 RWVRPAKGVIKLNVDASYHVDEGAGATGAVLRDSSGAFIAASCSFRQYAMDVPSMEALAL 358

Query: 70  LHGLKLVRHWGLVNVPVEADAQALVKAISENS 91
           L GL+L  H G+  + VE+D+Q +V+A+++ S
Sbjct: 359 LEGLRLAEHLGIYALVVESDSQEIVQAMTDPS 390

[Close]
BLAST of HG10009864 vs. NCBI nr
Match: TXG53482.1 (hypothetical protein EZV62_022651 [Acer yangbiense])

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-06
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 6   VGRDRWSPPVVGSLKL-----------KVRSGAIIRDSSGVVVVASSHFLLYQLESFAAE 65
           V R RWS P +GS K+           +V  GAIIRDS G V+VA+   +    +   AE
Sbjct: 582 VARIRWSKPDIGSFKINTDAAIKVANNQVGVGAIIRDSGGKVMVAAVQRMDACYDPSVAE 641

Query: 66  ALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLV---VVAAVQPLPF 113
           A+A+L GL++    GL+   +E+DAQ++V  I   S  C+  G VL    ++A++  +P 
Sbjct: 642 AVAILFGLRVAVGRGLLPAVLESDAQSVVNLICSGSDICADIGVVLSDIRILASLVEIPI 701

[Close]
BLAST of HG10009864 vs. NCBI nr
Match: GAV81730.1 (RVT_3 domain-containing protein/zf-RVT domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-06
Identity = 34/114 (29.82%), Postives = 62/114 (54.39%), Query Frame = 0 

Query: 11  WSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALL 70
           W PP+  ++KL              +G ++R+  G+V+VA+S F  Y ++ ++ EALA+L
Sbjct: 143 WHPPLSHTIKLNYDGAYSECEGLGGAGVVVRNVRGLVLVAASWFYPYAMDPYSTEALAIL 202

Query: 71  HGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLPFSH 114
            G++L    G  ++ +E+DA+ ++  I  NS   S YG V+  + ++ P    H
Sbjct: 203 LGMELAVRQGWKSIVIESDAETVINEILSNSPSLSSYGNVVEKIKSLTPFVDCH 256

[Close]
BLAST of HG10009864 vs. NCBI nr
Match: XP_039832956.1 (uncharacterized protein LOC120693663 isoform X1 [Panicum virgatum])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-05
Identity = 38/126 (30.16%), Postives = 60/126 (47.62%), Query Frame = 0 

Query: 2   HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLES 61
           H++  G + W  P    LK+               GA+IR+S G VV A +  + + L++
Sbjct: 196 HASREGVEHWKRPAEDVLKINSDGSFNPNTGAGGWGAVIRNSMGQVVKAGAGHIHHALDA 255

Query: 62  FAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLP 117
           F  E +A L G+K+    G+ NV +E DA  L  A+  NS + S  G ++  + A+    
Sbjct: 256 FHTEVIAALEGVKMAEMAGMTNVVLETDAILLKYALVNNSFRLSSVGGLIHEIKAIADAC 315

[Close]
BLAST of HG10009864 vs. ExPASy TrEMBL
Match: A0A7J6GAB1 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021018 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 0 

Query: 2   HSANVGRDRWSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLES 61
           HS       WSPP  G+ K+   +           G +IRD  G+VVVA + ++   L  
Sbjct: 312 HSLKKAPVSWSPPPSGTFKINTDASLIAGQPGCGLGVVIRDHLGIVVVAETVYIPGCLSV 371

Query: 62  FAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLP 117
             AE+LA+  GL L   W L ++ + +D Q ++ A++  +   S +G +LV +A  +P  
Sbjct: 372 NMAESLAIHSGLLLANRWSLSSICISSDCQPVIHALNGENHSISDWGLMLVGLACSRPQR 431

[Close]
BLAST of HG10009864 vs. ExPASy TrEMBL
Match: A0A5C7HA98 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_022651 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 6   VGRDRWSPPVVGSLKL-----------KVRSGAIIRDSSGVVVVASSHFLLYQLESFAAE 65
           V R RWS P +GS K+           +V  GAIIRDS G V+VA+   +    +   AE
Sbjct: 582 VARIRWSKPDIGSFKINTDAAIKVANNQVGVGAIIRDSGGKVMVAAVQRMDACYDPSVAE 641

Query: 66  ALALLHGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLV---VVAAVQPLPF 113
           A+A+L GL++    GL+   +E+DAQ++V  I   S  C+  G VL    ++A++  +P 
Sbjct: 642 AVAILFGLRVAVGRGLLPAVLESDAQSVVNLICSGSDICADIGVVLSDIRILASLVEIPI 701

[Close]
BLAST of HG10009864 vs. ExPASy TrEMBL
Match: A0A1Q3CNA3 (RVT_3 domain-containing protein/zf-RVT domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25184 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 34/114 (29.82%), Postives = 62/114 (54.39%), Query Frame = 0 

Query: 11  WSPPVVGSLKLKV-----------RSGAIIRDSSGVVVVASSHFLLYQLESFAAEALALL 70
           W PP+  ++KL              +G ++R+  G+V+VA+S F  Y ++ ++ EALA+L
Sbjct: 143 WHPPLSHTIKLNYDGAYSECEGLGGAGVVVRNVRGLVLVAASWFYPYAMDPYSTEALAIL 202

Query: 71  HGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVLVVVAAVQPLPFSH 114
            G++L    G  ++ +E+DA+ ++  I  NS   S YG V+  + ++ P    H
Sbjct: 203 LGMELAVRQGWKSIVIESDAETVINEILSNSPSLSSYGNVVEKIKSLTPFVDCH 256

[Close]
BLAST of HG10009864 vs. ExPASy TrEMBL
Match: A0A803QGC3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-06
Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = 0 

Query: 11   WSPPVVGSLKLKVRS-----------GAIIRDSSGVVVVASSHFLLYQLESFAAEALALL 70
            W PP  G   +   +            A+IRDS G +VVA++ FL   +    A+A  +L
Sbjct: 855  WQPPPNGVYMINTDASLIFGSPGCGISAVIRDSKGTLVVAATSFLPGCMSVLLAKATTIL 914

Query: 71   HGLKLVRHWGLVNVPVEADAQALVKAISENSMKCSPYGFVL----VVVAAVQPLP--FSH 130
            HG+ L R W + NV V +D+Q ++KA+S  +   + +G ++    ++ ++ Q L   F H
Sbjct: 915  HGINLARRWSMSNVQVGSDSQTIIKAVSTEATNHTDWGKLVHEIKLLKSSFQSLNFLFFH 974

Query: 131  RRCVEQQWAVAVVAVVQSSIHGASSCWSSLV-RTVAAVAVAVVPS 158
            R C +    VA      S +   S  W+ L+    AA+ +A VPS
Sbjct: 975  RDCNK----VANSLASWSRLTHKSELWTDLLPNCAAAMLLADVPS 1015

[Close]
BLAST of HG10009864 vs. ExPASy TrEMBL
Match: A0A7J6I1Z3 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_001786 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 27  AIIRDSSGVVVVASSHFLLYQLESFAAEALALLHGLKLVRHWGLVNVPVEADAQALVKAI 86
           A+IRDS G +VVA++ FL   +    A+A  +LHG+ L R W + NV V +D+Q ++KA+
Sbjct: 298 AVIRDSKGTLVVAATSFLPGCMSVLLAKATTILHGINLARRWSMSNVQVGSDSQTIIKAV 357

Query: 87  SENSMKCSPYGFVLVVVAAVQPL 110
           S  +   + +G + V  A ++ +
Sbjct: 358 STEATNHTDWGKLQVAGARLKKI 380

The following BLAST results are available for this feature:
BLAST of HG10009864 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4379885.18.2e-0831.75hypothetical protein G4B88_021018 [Cannabis sativa][more]
XP_037439691.19.0e-0739.13uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides][more]
TXG53482.13.4e-0636.36hypothetical protein EZV62_022651 [Acer yangbiense][more]
GAV81730.13.4e-0629.82RVT_3 domain-containing protein/zf-RVT domain-containing protein [Cephalotus fol... [more]
XP_039832956.12.2e-0530.16uncharacterized protein LOC120693663 isoform X1 [Panicum virgatum][more]
BLAST of HG10009864 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10009864 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6GAB14.0e-0831.75RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021018 PE=... [more]
A0A5C7HA981.7e-0636.36CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02265... [more]
A0A1Q3CNA31.7e-0629.82RVT_3 domain-containing protein/zf-RVT domain-containing protein OS=Cephalotus f... [more]
A0A803QGC33.7e-0630.30Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6I1Z31.4e-0536.14RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_001786 PE=... [more]
BLAST of HG10009864 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 24..91
e-value: 1.1E-12
score: 47.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 16..141
e-value: 5.1E-6
score: 28.6
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 2..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009864.1HG10009864.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity