HG10009754 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009754
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	psbQ-like protein 3, chloroplastic
Location	Chr06: 9763188 .. 9763719 (-)
RNA-Seq Expression	HG10009754
Synteny	HG10009754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAGTAAGTTCGATGTTGTTAAGCTCTTCAATGGATTCTTATCTTGATTTGAAGTGAAATCGCGAAGAATTTTGTGCTGTTCTTCGATTTCTTATCGATCTTCTCCTTTGATTGAAGTGTTTTTTTTTTATGTGATTTGCAGATGGATTATGCAGCGAGAGTTAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAATTTAG

mRNA sequence

ATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCAGCGAGAGTTAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAATTTAG

Coding sequence (CDS)

ATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCAGCGAGAGTTAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAATTTAG

Protein sequence

MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI

Homology

[Close]

BLAST of HG10009754 vs. NCBI nr
Match: XP_004148913.1 (psbQ-like protein 3, chloroplastic [Cucumis sativus] >KGN50891.1 hypothetical protein Csa_023092 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 8.7e-55
Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRL 60
           MASSVTAIP EVANALDLKLIAPEQSLDEAE+GIR H EALLQVR LIESEAWKEAQKRL
Sbjct: 55  MASSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRL 114

Query: 61  RSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIE 120
           RS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAAR KDV  VWE Y K+E
Sbjct: 115 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKME 174

Query: 121 MAISDILSRI 131
           MAISDILSRI
Sbjct: 175 MAISDILSRI 184

[Close]

BLAST of HG10009754 vs. NCBI nr
Match: XP_038877067.1 (psbQ-like protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 8.7e-55
Identity = 116/130 (89.23%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRL 60
           MASSVTA PVE+ANALDLKLIAPEQSLDEAE+GIR H EALLQVR LIESEAWKEAQKRL
Sbjct: 55  MASSVTATPVELANALDLKLIAPEQSLDEAESGIRSHAEALLQVRSLIESEAWKEAQKRL 114

Query: 61  RSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIE 120
           RSSS LLKQDLYTIIEYKPPAERPALRKLYS+LFNNVTRMDYAAR KDVE VW+CYN I 
Sbjct: 115 RSSSPLLKQDLYTIIEYKPPAERPALRKLYSVLFNNVTRMDYAARDKDVEGVWKCYNNIA 174

Query: 121 MAISDILSRI 131
           +AISDILSRI
Sbjct: 175 IAISDILSRI 184

[Close]

BLAST of HG10009754 vs. NCBI nr
Match: XP_008463126.1 (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo] >KAA0066219.1 psbQ-like protein 3 [Cucumis melo var. makuwa] >TYK08644.1 psbQ-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 116/130 (89.23%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRL 60
           MASSVTAIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR L+ESEAWKEAQKRL
Sbjct: 55  MASSVTAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRL 114

Query: 61  RSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIE 120
           RS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAAR KD   V ECY K+E
Sbjct: 115 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKME 174

Query: 121 MAISDILSRI 131
           MAISDILSRI
Sbjct: 175 MAISDILSRI 184

[Close]

BLAST of HG10009754 vs. NCBI nr
Match: XP_023551782.1 (psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 4.5e-51
Identity = 106/129 (82.17%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 2   ASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLR 61
           +SSV + PV++ANALDLKLIAPEQS +EAE+GIRGH EA+LQVRGLIESE+WKEAQK+LR
Sbjct: 62  SSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR 121

Query: 62  SSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEM 121
           SSS LLKQDLYTIIEYKPPAERP LR+LYSLLFNNVTRMDYAAR KD E VW+CY+ I M
Sbjct: 122 SSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVM 181

Query: 122 AISDILSRI 131
           AISDILSRI
Sbjct: 182 AISDILSRI 190

[Close]

BLAST of HG10009754 vs. NCBI nr
Match: XP_022991100.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 5.8e-51
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 2   ASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLR 61
           +SSV + PV++ NALDLKLIAPEQS +EAE+GIRGH EA+LQVRGLIESE+WKEAQK+LR
Sbjct: 57  SSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR 116

Query: 62  SSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEM 121
           SSS LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAAR KD E VW+CY+ I M
Sbjct: 117 SSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVM 176

Query: 122 AISDILSRI 131
           AISDILSRI
Sbjct: 177 AISDILSRI 185

[Close]

BLAST of HG10009754 vs. ExPASy Swiss-Prot
Match: Q2V4B2 (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 23  PEQSLDEAETGIRGHVEALLQVRG-LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPA 82
           PE++++ A+ G+R + E + +++  +IE + WKE  K LR S++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 83  ERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           +RP  R LYS LFN++T+MDYAAR  D  +V E Y  I   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of HG10009754 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-10
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 29  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 88
           EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 89  LYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           L + LF+ +  +DYAA+ K   +  + Y +   A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of HG10009754 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-09
Identity = 29/102 (28.43%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 29  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 88
           EA   ++   + ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174

Query: 89  LYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           L   LF+ +  +D+AA++K   E  + +   + A+ D+L+++
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of HG10009754 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.7e-09
Identity = 29/102 (28.43%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 29  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 88
           EA   ++   + ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170

Query: 89  LYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           L   LF+ +  +D+AA++K   E  + +   + A+ D+L+++
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of HG10009754 vs. ExPASy TrEMBL
Match: A0A0A0KT23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.2e-55
Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRL 60
           MASSVTAIP EVANALDLKLIAPEQSLDEAE+GIR H EALLQVR LIESEAWKEAQKRL
Sbjct: 55  MASSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRL 114

Query: 61  RSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIE 120
           RS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAAR KDV  VWE Y K+E
Sbjct: 115 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKME 174

Query: 121 MAISDILSRI 131
           MAISDILSRI
Sbjct: 175 MAISDILSRI 184

[Close]

BLAST of HG10009754 vs. ExPASy TrEMBL
Match: A0A5A7VLN5 (PsbQ-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00050 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.1e-54
Identity = 116/130 (89.23%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRL 60
           MASSVTAIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR L+ESEAWKEAQKRL
Sbjct: 55  MASSVTAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRL 114

Query: 61  RSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIE 120
           RS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAAR KD   V ECY K+E
Sbjct: 115 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKME 174

Query: 121 MAISDILSRI 131
           MAISDILSRI
Sbjct: 175 MAISDILSRI 184

[Close]

BLAST of HG10009754 vs. ExPASy TrEMBL
Match: A0A1S3CIJ1 (psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.1e-54
Identity = 116/130 (89.23%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRL 60
           MASSVTAIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR L+ESEAWKEAQKRL
Sbjct: 55  MASSVTAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRL 114

Query: 61  RSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIE 120
           RS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAAR KD   V ECY K+E
Sbjct: 115 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKME 174

Query: 121 MAISDILSRI 131
           MAISDILSRI
Sbjct: 175 MAISDILSRI 184

[Close]

BLAST of HG10009754 vs. ExPASy TrEMBL
Match: A0A6J1JRX6 (psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487796 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 2   ASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLR 61
           +SSV + PV++ NALDLKLIAPEQS +EAE+GIRGH EA+LQVRGLIESE+WKEAQK+LR
Sbjct: 57  SSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR 116

Query: 62  SSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEM 121
           SSS LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAAR KD E VW+CY+ I M
Sbjct: 117 SSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVM 176

Query: 122 AISDILSRI 131
           AISDILSRI
Sbjct: 177 AISDILSRI 185

[Close]

BLAST of HG10009754 vs. ExPASy TrEMBL
Match: A0A6J1HES6 (psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462819 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 2   ASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLR 61
           +SSV + PV +ANALDLKLIAPEQS +EAE+GIRGH EA+LQVRGLIESE+WKEAQK+LR
Sbjct: 58  SSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR 117

Query: 62  SSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEM 121
           +SS LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAAR KD E V +CY+ I M
Sbjct: 118 TSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVM 177

Query: 122 AISDILSRI 131
           AISDILSRI
Sbjct: 178 AISDILSRI 186

[Close]

BLAST of HG10009754 vs. TAIR 10
Match: AT2G01918.1 (PsbQ-like 3 )

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 23  PEQSLDEAETGIRGHVEALLQVRG-LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPA 82
           PE++++ A+ G+R + E + +++  +IE + WKE  K LR S++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 83  ERPALRKLYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           +RP  R LYS LFN++T+MDYAAR  D  +V E Y  I   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of HG10009754 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 29  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 88
           EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 121 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 180

Query: 89  LYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           L + LF+ +  +DYAA+ K   +  + Y +   A++++L+++
Sbjct: 181 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of HG10009754 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 29  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 88
           EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 89  LYSLLFNNVTRMDYAARVKDVEEVWECYNKIEMAISDILSRI 131
           L + LF+ +  +DYAA+ K   +  + Y +   A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of HG10009754 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 42.7 bits (99), Expect = 2.6e-04
Identity = 23/90 (25.56%), Postives = 44/90 (48.89%), Query Frame = 0


Query: 41  LLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRM 100
           LL +  LI  +     +K LR  S  L  D   +I      ++  L  L + LF+N  ++
Sbjct: 130 LLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLFDNFEKL 189

Query: 101 DYAARVKDVEEVWECYNKIEMAISDILSRI 131
           + AA+ K++ E   CY   +  + ++++R+
Sbjct: 190 EDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

The following BLAST results are available for this feature:

BLAST of HG10009754 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148913.1	8.7e-55	90.77	psbQ-like protein 3, chloroplastic [Cucumis sativus] >KGN50891.1 hypothetical pr...	[more]
XP_038877067.1	8.7e-55	89.23	psbQ-like protein 3, chloroplastic [Benincasa hispida]	[more]
XP_008463126.1	1.3e-53	89.23	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo] >KAA0066219.1 psbQ-...	[more]
XP_023551782.1	4.5e-51	82.17	psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022991100.1	5.8e-51	82.17	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]

BLAST of HG10009754 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V4B2	2.1e-19	44.95	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 ...	[more]
Q9XFT3	8.8e-10	31.37	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41048	2.6e-09	28.43	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q41806	5.7e-09	28.43	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]

BLAST of HG10009754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23	4.2e-55	90.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=3 SV=1	[more]
A0A5A7VLN5	6.1e-54	89.23	PsbQ-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G...	[more]
A0A1S3CIJ1	6.1e-54	89.23	psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=3 ...	[more]
A0A6J1JRX6	2.8e-51	82.17	psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HES6	1.2e-49	81.40	psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of HG10009754 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01918.1	1.5e-20	44.95	PsbQ-like 3	[more]
AT4G21280.1	6.3e-11	31.37	photosystem II subunit QA	[more]
AT4G21280.2	6.3e-11	31.37	photosystem II subunit QA	[more]
AT3G01440.1	2.6e-04	25.56	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 23..129 e-value: 9.1E-19 score: 68.0
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 7..130
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 5..130 e-value: 3.8E-32 score: 113.3
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 23..130
None	No IPR available	PANTHER	PTHR33399:SF6	PSBQ-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 7..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009754.1	HG10009754.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity