HG10009742 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009742
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr06: 9588693 .. 9589202 (-)
RNA-Seq Expression	HG10009742
Synteny	HG10009742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAAAATGTTGGCGATTACTTCATTGGACCAGGCCTGGAGCAGCTCATTCAATTGCTGGCTGACAATGATCCGAACCGATATGGAACTCCGCCGGCTTCGAAATCGGCGATTGAGAAGCTTTCGACTGTGACTGTTACAGAGGATCTTCGGAATTCGGAAATGAACCAATGTGCCGTTTGCATTGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCTTGCAAGCATGTTTTTCACGATTATTGTCTATTGCCTTGGCTTGAATTGCATAATTCATGCCCTGTTTGCCGGTTCGAGTTGCCTACGGATGATGCTGATTACGAGAATCGAACACGTGGAAACCGGGTGCAGGGGAATGAATCTTCCGTGGAAGAATCAGGGTCAGGAAACAGTGGGAGCAGTACGGGGCGTGTTGAGAGGAGGTTTAGAGTGCCGCTATGGTGGCCGTTTGGCGGCCGGAACGATGGGAGTGACTCCGGTGGTGGGAATGACAGCGATTAA

mRNA sequence

ATGCCTCAAAATGTTGGCGATTACTTCATTGGACCAGGCCTGGAGCAGCTCATTCAATTGCTGGCTGACAATGATCCGAACCGATATGGAACTCCGCCGGCTTCGAAATCGGCGATTGAGAAGCTTTCGACTGTGACTGTTACAGAGGATCTTCGGAATTCGGAAATGAACCAATGTGCCGTTTGCATTGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCTTGCAAGCATGTTTTTCACGATTATTGTCTATTGCCTTGGCTTGAATTGCATAATTCATGCCCTGTTTGCCGGTTCGAGTTGCCTACGGATGATGCTGATTACGAGAATCGAACACGTGGAAACCGGGTGCAGGGGAATGAATCTTCCGTGGAAGAATCAGGGTCAGGAAACAGTGGGAGCAGTACGGGGCGTGTTGAGAGGAGGTTTAGAGTGCCGCTATGGTGGCCGTTTGGCGGCCGGAACGATGGGAGTGACTCCGGTGGTGGGAATGACAGCGATTAA

Coding sequence (CDS)

ATGCCTCAAAATGTTGGCGATTACTTCATTGGACCAGGCCTGGAGCAGCTCATTCAATTGCTGGCTGACAATGATCCGAACCGATATGGAACTCCGCCGGCTTCGAAATCGGCGATTGAGAAGCTTTCGACTGTGACTGTTACAGAGGATCTTCGGAATTCGGAAATGAACCAATGTGCCGTTTGCATTGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCTTGCAAGCATGTTTTTCACGATTATTGTCTATTGCCTTGGCTTGAATTGCATAATTCATGCCCTGTTTGCCGGTTCGAGTTGCCTACGGATGATGCTGATTACGAGAATCGAACACGTGGAAACCGGGTGCAGGGGAATGAATCTTCCGTGGAAGAATCAGGGTCAGGAAACAGTGGGAGCAGTACGGGGCGTGTTGAGAGGAGGTTTAGAGTGCCGCTATGGTGGCCGTTTGGCGGCCGGAACGATGGGAGTGACTCCGGTGGTGGGAATGACAGCGATTAA

Protein sequence

MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQGNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD

Homology

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BLAST of HG10009742 vs. NCBI nr
Match: XP_038907201.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 2.8e-90
Identity = 161/169 (95.27%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKL TVTVTEDL NSEMNQCA
Sbjct: 141 MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLPTVTVTEDLLNSEMNQCA 200

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VCID FEKGI+VKQMPCKHVFHDYC+LPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ
Sbjct: 201 VCIDEFEKGIKVKQMPCKHVFHDYCILPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 260

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NESS EESGSGNSG+STGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD
Sbjct: 261 ANESSGEESGSGNSGNSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 309

[Close]

BLAST of HG10009742 vs. NCBI nr
Match: XP_022938450.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 324.7 bits (831), Expect = 4.7e-85
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKL TVTVTEDL NSEMNQCA
Sbjct: 144 MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLPTVTVTEDLLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VCIDGFEK  +VKQMPCKHVFHDYC+LPWLELHNSCPVCRFELPTDD+DYENRTRG++VQ
Sbjct: 204 VCIDGFEKDTKVKQMPCKHVFHDYCILPWLELHNSCPVCRFELPTDDSDYENRTRGSQVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NESS EESGSGN GS++GRVERRFRVPLWWPFGGRNDGSDSG GN S+
Sbjct: 264 ANESSGEESGSGNRGSNSGRVERRFRVPLWWPFGGRNDGSDSGDGNVSE 312

[Close]

BLAST of HG10009742 vs. NCBI nr
Match: KAA0055876.1 (E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK24099.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLST+TVTEDL NSEMNQCA
Sbjct: 139 MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTITVTEDLLNSEMNQCA 198

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           +CID FEKGIEVKQMPCKHVFHDYCLLPWLELHNSC VCRFELPTDD+DYENRT GNR+Q
Sbjct: 199 ICIDDFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCLVCRFELPTDDSDYENRTCGNRMQ 258

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
           GNESS EESGS + GSST RVERRFRVPLWWPFG RNDGSDSGGG DS+
Sbjct: 259 GNESSGEESGSESGGSSTRRVERRFRVPLWWPFGSRNDGSDSGGGIDSE 307

[Close]

BLAST of HG10009742 vs. NCBI nr
Match: XP_022990139.1 (E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 3.0e-84
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLA+NDPNR+GTPPASKSAIEKL  VTVTEDL NSEMNQCA
Sbjct: 144 MPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+DGFEKGIEVKQMPCKH+FHDYCLLPWLELHNSCPVCRFEL TDD+DYENRTRG RVQ
Sbjct: 204 VCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NES+ EE GSGNSGSS+ RVER FRVPLWWPFGGRNDGS SGGGNDS+
Sbjct: 264 ANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDGSSSGGGNDSE 312

[Close]

BLAST of HG10009742 vs. NCBI nr
Match: XP_023554317.1 (E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554326.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554330.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554338.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554347.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554356.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554365.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554375.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554385.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554392.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554402.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.6 bits (823), Expect = 4.0e-84
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLA+NDPNR+GTPPASKSAIEKL  VTVTEDL NSEMNQCA
Sbjct: 144 MPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+DGFEKGIEVKQMPCKH+FHDYCLLPWLELHNSCPVCRFEL TDD+DYENRTRG RVQ
Sbjct: 204 VCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NES+ EE GSGNSGSS+ RVER FRVPLWWPFGGRNDGS SGGGNDS+
Sbjct: 264 ANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDGSGSGGGNDSE 312

[Close]

BLAST of HG10009742 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.7e-58
Identity = 110/165 (66.67%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MP N GDYF GPGLEQLIQ LA+NDPNRYGTPPASKSAI+ L TV VT+D+  SEMNQCA
Sbjct: 158 MPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCA 217

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+D FE G +VKQMPCKHVFH  CLLPWLELHNSCPVCRFELPTDD DYENR++G++  
Sbjct: 218 VCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGS 277

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGG 166
           G+            GS  G+   RF + L WPF  R DGS SG G
Sbjct: 278 GD----------GQGSVEGQQTPRFSIQLPWPF-RRQDGSGSGSG 311

[Close]

BLAST of HG10009742 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-55
Identity = 105/164 (64.02%), Postives = 116/164 (70.73%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           +P N+GDYFIGPGLEQLIQ LA+NDPNRYGTPPASKSAIE L  V +T+   NSE NQCA
Sbjct: 166 LPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCA 225

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+D FE+G E KQMPCKH++H  CLLPWLELHNSCPVCR ELPTDD DYE R RG   Q
Sbjct: 226 VCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRG--AQ 285

Query: 121 GNESSVEESGSGNSGSSTGR-VERRFRVPLWWPFGGRNDGSDSG 164
           G     +   SG       R VER FR+ L WPF  R  G   G
Sbjct: 286 GTSGGNDGDNSGQRSDGDNRTVERSFRISLPWPFQARGPGPAPG 327

[Close]

BLAST of HG10009742 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 7   DYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVCIDGF 66
           +Y +G GL  L+Q LA++DP+R GTPPA K A+E L TV +       E+  C+VC+D  
Sbjct: 153 EYVLGAGLSLLLQHLAESDPSRNGTPPAKKEAVEALPTVKI------EEVVSCSVCLDDL 212

Query: 67  EKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDA-DYENRTRGNRVQGNESS 126
           E G + KQMPC+H FH  C+LPWLELH+SCPVCRFELP+++  D    +   RV+ +   
Sbjct: 213 EVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEE 272

Query: 127 VEESGSGNSGSSTGR 141
           V   G GN   S+ R
Sbjct: 273 VRADGPGNVSESSNR 281

[Close]

BLAST of HG10009742 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-29
Identity = 77/173 (44.51%), Postives = 99/173 (57.23%), Query Frame = 0


Query: 4   NVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTE-DLRNSEMNQCAVC 63
           N GDYF GPGLE+L + L+     R G PPA +SAI+ L T+ + +  LR+S+ N C VC
Sbjct: 136 NTGDYFFGPGLEELFEQLSAGTTRR-GPPPAPRSAIDALPTIKIAQRHLRSSDSN-CPVC 195

Query: 64  IDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELP--TDDADYENRTRGNRVQ 123
            D FE G E KQMPC H++H  C++PWL  HNSCPVCR ELP  +  +  +NRT   R  
Sbjct: 196 KDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSASGPSSSQNRTTPTRNY 255

Query: 124 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDS----GGGNDSD 170
            + SS   S S  +G+     ERR     +WPF      S S    GG  +SD
Sbjct: 256 RSSSSSSSSNSRENGN-----ERRNPFSSFWPFRSSGSSSSSTQNRGGTRNSD 301

[Close]

BLAST of HG10009742 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-27
Identity = 65/147 (44.22%), Postives = 86/147 (58.50%), Query Frame = 0


Query: 4   NVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVCI 63
           N GDYF GPGLE+LI+ L+    +R G PPA KS+I+ L T+ +T+    S  + C VC 
Sbjct: 132 NAGDYFFGPGLEELIEQLSSGTHHR-GPPPAPKSSIDALPTIKITQKHLKSSDSHCPVCK 191

Query: 64  DGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNR-VQGN 123
           D FE   E KQMPC H++H  C++PWL  HNSCPVCR ELP+  +    ++  NR   G 
Sbjct: 192 DEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGSSSSTQSSQNRSTNGR 251

Query: 124 ESSVEESGSGN-----SGSSTGRVERR 145
           E+S   +   N     S SS+    RR
Sbjct: 252 ENSRRRNIFSNLWPFRSSSSSSTQNRR 277

[Close]

BLAST of HG10009742 vs. ExPASy TrEMBL
Match: A0A6J1FJU6 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111444684 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKL TVTVTEDL NSEMNQCA
Sbjct: 144 MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLPTVTVTEDLLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VCIDGFEK  +VKQMPCKHVFHDYC+LPWLELHNSCPVCRFELPTDD+DYENRTRG++VQ
Sbjct: 204 VCIDGFEKDTKVKQMPCKHVFHDYCILPWLELHNSCPVCRFELPTDDSDYENRTRGSQVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NESS EESGSGN GS++GRVERRFRVPLWWPFGGRNDGSDSG GN S+
Sbjct: 264 ANESSGEESGSGNRGSNSGRVERRFRVPLWWPFGGRNDGSDSGDGNVSE 312

[Close]

BLAST of HG10009742 vs. ExPASy TrEMBL
Match: A0A5A7UNL2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00740 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.6e-85
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLST+TVTEDL NSEMNQCA
Sbjct: 139 MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTITVTEDLLNSEMNQCA 198

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           +CID FEKGIEVKQMPCKHVFHDYCLLPWLELHNSC VCRFELPTDD+DYENRT GNR+Q
Sbjct: 199 ICIDDFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCLVCRFELPTDDSDYENRTCGNRMQ 258

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
           GNESS EESGS + GSST RVERRFRVPLWWPFG RNDGSDSGGG DS+
Sbjct: 259 GNESSGEESGSESGGSSTRRVERRFRVPLWWPFGSRNDGSDSGGGIDSE 307

[Close]

BLAST of HG10009742 vs. ExPASy TrEMBL
Match: A0A6J1JR94 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111487122 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLA+NDPNR+GTPPASKSAIEKL  VTVTEDL NSEMNQCA
Sbjct: 144 MPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+DGFEKGIEVKQMPCKH+FHDYCLLPWLELHNSCPVCRFEL TDD+DYENRTRG RVQ
Sbjct: 204 VCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NES+ EE GSGNSGSS+ RVER FRVPLWWPFGGRNDGS SGGGNDS+
Sbjct: 264 ANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDGSSSGGGNDSE 312

[Close]

BLAST of HG10009742 vs. ExPASy TrEMBL
Match: A0A6J1K1C4 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111489246 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.3e-84
Identity = 150/169 (88.76%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKS IEKL  VTVTEDL NSEMNQCA
Sbjct: 144 MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSVIEKLPNVTVTEDLLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VCIDGFEK  EVKQMPCKHVFHDYC+LPWLELHNSCPVCRFELPTDD+DYENRTRG++VQ
Sbjct: 204 VCIDGFEKDTEVKQMPCKHVFHDYCILPWLELHNSCPVCRFELPTDDSDYENRTRGSQVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NESS EESGSGN GS+ GRVERRFRVPLWWPFGGRNDG+DSG GN S+
Sbjct: 264 ANESSGEESGSGNRGSNRGRVERRFRVPLWWPFGGRNDGNDSGDGNVSE 312

[Close]

BLAST of HG10009742 vs. ExPASy TrEMBL
Match: A0A6J1H9Y0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461423 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MPQN+GDYFIGPGLEQLIQLLA+NDPNR+GTPPASKSAIEKL  VTVTE+L NSEMNQCA
Sbjct: 144 MPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCA 203

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+DGFEKGIEVKQMPCKH+FHDYCLLPWLELHNSCPVCRFEL TDD+DYENRTRG RVQ
Sbjct: 204 VCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQ 263

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGGNDSD 170
            NES+ EE GSGNSGSS+ RVER FRVPLWWPFGGRNDGS SGGGNDS+
Sbjct: 264 ANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDGSGSGGGNDSE 312

[Close]

BLAST of HG10009742 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 224.6 bits (571), Expect = 6.2e-59
Identity = 110/165 (66.67%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   MPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCA 60
           MP N GDYF GPGLEQLIQ LA+NDPNRYGTPPASKSAI+ L TV VT+D+  SEMNQCA
Sbjct: 158 MPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCA 217

Query: 61  VCIDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQ 120
           VC+D FE G +VKQMPCKHVFH  CLLPWLELHNSCPVCRFELPTDD DYENR++G++  
Sbjct: 218 VCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGS 277

Query: 121 GNESSVEESGSGNSGSSTGRVERRFRVPLWWPFGGRNDGSDSGGG 166
           G+            GS  G+   RF + L WPF  R DGS SG G
Sbjct: 278 GD----------GQGSVEGQQTPRFSIQLPWPF-RRQDGSGSGSG 311

[Close]

BLAST of HG10009742 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-40
Identity = 88/178 (49.44%), Postives = 109/178 (61.24%), Query Frame = 0


Query: 4   NVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVCI 63
           ++GDYFIGPGL+ L+Q LA+NDPNR GTPPA K A+E L TV + E L      QC+VC+
Sbjct: 210 SLGDYFIGPGLDLLLQHLAENDPNRQGTPPARKEAVEALPTVKIMEPL------QCSVCL 269

Query: 64  DGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTD-DADYENRTRGNRVQGN 123
           D FEKG E K+MPCKH FH  C++PWLELH+SCPVCRFELP+  D D E +T   RV   
Sbjct: 270 DDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDDDETKTDSERVL-R 329

Query: 124 ESSVEESGSGNSGSSTGRVE------------RRFRVPLWWPFGGRNDGSDSGGGNDS 169
             +V E+ +GN   + G  +            RRF  P  WPF G    S S   + S
Sbjct: 330 TRNVRETSNGNVVENVGNADRGREDEVRSGNGRRFSFP--WPFSGLFSSSSSSSSSTS 378

[Close]

BLAST of HG10009742 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-38
Identity = 73/137 (53.28%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 4   NVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVCI 63
           ++GDYFIGPG E L+Q LA+NDPNRYGTPPA K A+E L+TV + E L      QC+VC+
Sbjct: 174 SLGDYFIGPGFEMLLQRLAENDPNRYGTPPAKKEAVEALATVKIEETL------QCSVCL 233

Query: 64  DGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPTDDADYENRTRGNRVQGNE 123
           D FE G E K MPC H FH  CLLPWLELH+SCPVCR++LP D+A  ++ T  +   G+ 
Sbjct: 234 DDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADEAKTDSVTTTSDNNGSS 293

Query: 124 SSVEESGSGNSGSSTGR 141
           S+   +  G   S   R
Sbjct: 294 SASATTSHGAENSDGNR 304

[Close]

BLAST of HG10009742 vs. TAIR 10
Match: AT3G13430.1 (RING/U-box superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-35
Identity = 71/136 (52.21%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 4   NVGDYFIGPGLEQLIQLLADND-PNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVC 63
           ++GDYFIGPG E L+Q LA+ND  NRYGTPPA+K A+E L+ V + + L      QC+VC
Sbjct: 174 SLGDYFIGPGFETLLQRLAENDLNNRYGTPPATKEAVEALAMVKIEDSLL-----QCSVC 233

Query: 64  IDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPT-DDADYENRTRGNRVQG 123
           +D FE G+E K+MPCKH FH  CLLPWLELH+SCPVCR+ LPT DD + +     +R   
Sbjct: 234 LDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDDEPKTDAETSRNDD 293

Query: 124 NESSVEESGSGNSGSS 138
           N   +  +   ++GSS
Sbjct: 294 NNEDISNASMASNGSS 304

[Close]

BLAST of HG10009742 vs. TAIR 10
Match: AT3G13430.2 (RING/U-box superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-35
Identity = 71/136 (52.21%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 4   NVGDYFIGPGLEQLIQLLADND-PNRYGTPPASKSAIEKLSTVTVTEDLRNSEMNQCAVC 63
           ++GDYFIGPG E L+Q LA+ND  NRYGTPPA+K A+E L+ V + + L      QC+VC
Sbjct: 174 SLGDYFIGPGFETLLQRLAENDLNNRYGTPPATKEAVEALAMVKIEDSLL-----QCSVC 233

Query: 64  IDGFEKGIEVKQMPCKHVFHDYCLLPWLELHNSCPVCRFELPT-DDADYENRTRGNRVQG 123
           +D FE G+E K+MPCKH FH  CLLPWLELH+SCPVCR+ LPT DD + +     +R   
Sbjct: 234 LDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDDEPKTDAETSRNDD 293

Query: 124 NESSVEESGSGNSGSS 138
           N   +  +   ++GSS
Sbjct: 294 NNEDISNASMASNGSS 304

The following BLAST results are available for this feature:

BLAST of HG10009742 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907201.1	2.8e-90	95.27	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]
XP_022938450.1	4.7e-85	89.94	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
KAA0055876.1	1.4e-84	90.53	E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK24099.1 E3...	[more]
XP_022990139.1	3.0e-84	88.76	E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita maxima]	[more]
XP_023554317.1	4.0e-84	88.76	E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]

BLAST of HG10009742 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	8.7e-58	66.67	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
P0CH30	1.8e-55	64.02	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q6AVN2	1.5e-30	47.41	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
O22197	1.0e-29	44.51	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q94AK4	6.1e-27	44.22	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]

BLAST of HG10009742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJU6	2.3e-85	89.94	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111444684...	[more]
A0A5A7UNL2	6.6e-85	90.53	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1JR94	1.5e-84	88.76	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111487122 P...	[more]
A0A6J1K1C4	3.3e-84	88.76	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111489246 P...	[more]
A0A6J1H9Y0	1.2e-83	87.57	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461423...	[more]

BLAST of HG10009742 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19950.1	6.2e-59	66.67	RING/U-box superfamily protein	[more]
AT5G56340.1	2.9e-40	49.44	RING/U-box superfamily protein	[more]
AT1G55530.1	7.8e-38	53.28	RING/U-box superfamily protein	[more]
AT3G13430.1	2.1e-35	52.21	RING/U-box superfamily protein	[more]
AT3G13430.2	2.1e-35	52.21	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 4.5E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 57..100 e-value: 7.6E-13 score: 48.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.267982
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 22..106 e-value: 7.6E-23 score: 82.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..140
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 3..149
None	No IPR available	PANTHER	PTHR15710:SF75	E3 UBIQUITIN-PROTEIN LIGASE RING1	coord: 3..149
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 38..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009742.1	HG10009742.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity