HG10009726 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009726
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	high mobility group B protein 7-like
Location	Chr06: 9344781 .. 9346583 (-)
RNA-Seq Expression	HG10009726
Synteny	HG10009726

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCTGACGTCGCCGTCACTGGCCCTTCGCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGGTGCGTTCTTTGTTTTTCCCCCATATTCTTTATGCATGTTCTTGTTGATTTACATTGACTGGCTTAGCGTTGGCGAGGATGTAGTCGTATTGCCGAATTTCTGTAACTTTGTGTTTTCTTTCTGCTTTCATTTTTACGTTTGTTTCATCGATTGATTTGTGTTATACTCTCGTAACACTCCATGTTAGTGGTTTCTAGAGTTTATTTTTTTGTTTTTGTTTTTGGCATTGATAATTTCTGGTTTGCAGTCCGCCTTCTAGTCCGATTTTGTTTTAGAGTTGAATGCAATGTTCGTTTTCTTTATGAATGTTCTTGTTGAGTTACATTTACTGGATTGGGGCTAAGATGATATGGAATTATTGATGAATCTCTATAATACTGCGTGTTTATATCAGTTTCATTTCTCTGTTAGGTTTATTTGTGTGTTCGTCTTGTAGTTTCCTAATACTCCATTTCTTCGGTCATTTTCTAATAAATAAATTGTGGTTTCTTGAGTTTATGTTGTTTATGCATTGATAATATCTGGCTATCAGTTTGCCTTTTGGTCGGAGTTAGTTTTGGAGTTGAATGAACTGTAACCAGAGGAATTGTAGACGCAGCAATTTTGAGTTTCTTGACTACGGTAGAAATTGATTTCTCTTATTTGAATGGTCAATTTTCGGCTTACAGCGATGAGTGCGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGCAGCCTCGACGCCAAAATTAGAATGAATTTAGGTATATTTTTCGTGTGGCTTCGTTATTACCTTTTTTTGTTGGCATTATTTTCTGATTTGTAACTCTTACCTTTCTGTTTTCCTGTAGAGTCTCAGACTGTTGAAAAGCAAGCACAAGCCAAACAGCCAGCTGAAAGGTATCTTGCTCATTTTCCCTTGTTCTTATCTGGTTAAGGTGATGCTTTGAGTTGTATTAACTTGATTGTTTCGTGGTACAGGAAAAGATCAGCACCATCCGAACCAAAGGCTAAGAAATCCAGAACGGAGAAGAGAGGGAAGAAAGACAAAGATCCAAATGCCCCCAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGTACGCAAATTCCACTAGTGTTTATCAGATTACTACATGGGTAGTCTCTATTTACTCAACTCTTCACTGAATTTGCTTGTTGTGATACTTCAGGGATGACTTCAGAAAATCATATAAAGAAGCAAATCCTGATTCCAAAGGCGTTAAGGAGGTTAGCACAGATCCAAATACAATTCCCAAGTTCCCAATGAAAAATAATATCGATATCCCAAATTATTGTATGCTGTCTTCTGATTGAGTATTTCAATCATTATAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCAATGACCGATGAAGTGAGTTGCATTCCCTGCCGTTTGAAAACATGTTTACATTTTGTGAATTGAGTCATCTAAACCTTTAAATGATGAACAGGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCTAAATGCTGAAAATGAAGATGTAAGATTTAAGCTCTAAAATGTTATCTTTCAGTTCAATTTTGCAAATGCTTATGTGGGGCTTTTCTTCAGGATGAAAAAGAGACAGAAGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGACGAAGAGTAA

mRNA sequence

ATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCTGACGTCGCCGTCACTGGCCCTTCGCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGCGATGAGTGCGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGCAGCCTCGACGCCAAAATTAGAATGAATTTAGAGTCTCAGACTGTTGAAAAGCAAGCACAAGCCAAACAGCCAGCTGAAAGGAAAAGATCAGCACCATCCGAACCAAAGGCTAAGAAATCCAGAACGGAGAAGAGAGGGAAGAAAGACAAAGATCCAAATGCCCCCAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGGATGACTTCAGAAAATCATATAAAGAAGCAAATCCTGATTCCAAAGGCGTTAAGGAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCAATGACCGATGAAGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCTAAATGCTGAAAATGAAGATGATGAAAAAGAGACAGAAGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGACGAAGAGTAA

Coding sequence (CDS)

ATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCTGACGTCGCCGTCACTGGCCCTTCGCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGCGATGAGTGCGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGCAGCCTCGACGCCAAAATTAGAATGAATTTAGAGTCTCAGACTGTTGAAAAGCAAGCACAAGCCAAACAGCCAGCTGAAAGGAAAAGATCAGCACCATCCGAACCAAAGGCTAAGAAATCCAGAACGGAGAAGAGAGGGAAGAAAGACAAAGATCCAAATGCCCCCAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGGATGACTTCAGAAAATCATATAAAGAAGCAAATCCTGATTCCAAAGGCGTTAAGGAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCAATGACCGATGAAGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCTAAATGCTGAAAATGAAGATGATGAAAAAGAGACAGAAGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGACGAAGAGTAA

Protein sequence

MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITDEE

Homology

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BLAST of HG10009726 vs. NCBI nr
Match: XP_023550365.1 (high mobility group B protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 4.1e-91
Identity = 192/206 (93.20%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPA  A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPAAAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIR NLE+QTVEKQ QAK+PAE+KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV
Sbjct: 61  KIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ESL 180
           FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES 
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
           NAENE+DEKETEEVAEKEVEE+TDEE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of HG10009726 vs. NCBI nr
Match: XP_022938415.1 (high mobility group B protein 7-like [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 7.0e-91
Identity = 192/206 (93.20%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPA  A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPAAAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIR NLE+QTVEKQ QAK+PAE+KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV
Sbjct: 61  KIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ESL 180
           FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES 
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
           NAENE+DEKETEEVAEKEVEE+TDEE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of HG10009726 vs. NCBI nr
Match: XP_022992985.1 (high mobility group B protein 7-like [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 191/206 (92.72%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPA  A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPAAAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIR NLE+QTV+KQ QAK+PAE+KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV
Sbjct: 61  KIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ESL 180
           FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES 
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
           NAENE+DEKETEEVAEKEVEE+TDEE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of HG10009726 vs. NCBI nr
Match: KAG6579089.1 (High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.8 bits (878), Expect = 2.0e-90
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPA  A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPAAAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIR NLE+QTVEKQ QAK+PAE+KRSAPSEPKAKK RTEKRGKKDKDPNAPKRPPTAFFV
Sbjct: 61  KIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKFRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ESL 180
           FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES 
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
           NAENE+DEKETEEVAEKEVEE+TDEE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of HG10009726 vs. NCBI nr
Match: XP_004150195.1 (high mobility group B protein 7 [Cucumis sativus] >KAE8648379.1 hypothetical protein Csa_023364 [Cucumis sativus])

HSP 1 Score: 341.7 bits (875), Expect = 4.5e-90
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPADVA TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIRMNLESQTVEKQ Q+K+PAE+KRSA SEPK KKSRTEK+GKKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRMNLESQTVEKQTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFI 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLN 180
           FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALES N
Sbjct: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESRN 180

Query: 181 AENEDDEKETEEV--AEKEVEEITDEE 206
           AENEDDEKETEE    E+EVE IT+EE
Sbjct: 181 AENEDDEKETEETEEIEEEVEGITEEE 207

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BLAST of HG10009726 vs. ExPASy Swiss-Prot
Match: Q8LDF9 (High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-41
Identity = 113/202 (55.94%), Postives = 147/202 (72.77%), Query Frame = 0


Query: 8   KSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLE 67
           K RKRVEA  +  + T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NLE
Sbjct: 12  KQRKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLE 71

Query: 68  SQTVEKQAQA-KQPAERKRSAPSEPKAKK-SRTEKRGKKDKDPNAPKRPPTAFFVFMDDF 127
           +Q VE QA+A K+PAE+K++    PK K+  +T    K     N PKRP TAFF+FM DF
Sbjct: 72  AQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDF 131

Query: 128 RKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNA--EN 187
           RK++K  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LES +A  E 
Sbjct: 132 RKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEE 191

Query: 188 EDDEKETEEVAEKEVEEITDEE 206
           ED+EK++++V + E +++ D++
Sbjct: 192 EDEEKQSDDVDDAEEKQVDDDD 210

[Close]

BLAST of HG10009726 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 84  KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 143
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 144 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 203
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 204 EE 206
           E+
Sbjct: 147 ED 143

[Close]

BLAST of HG10009726 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-16
Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 67  ESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFR 126
           +S+   K+A+ K    +K +A +    K  +   +GK+ KDPN PKRPP+AFFVFM DFR
Sbjct: 5   KSKGESKKAETKLAVNKKGAAAT----KGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 64

Query: 127 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDD 186
           + YK+ +P++K V  V K  GE+WKS+++EEK PY D+A + K EYE  L++ N + E  
Sbjct: 65  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEG- 124

Query: 187 EKETEEVAEKEVEEITDEE 206
            K+ EE ++K   E+ DE+
Sbjct: 125 -KDDEEGSDKSKSEVNDED 137

[Close]

BLAST of HG10009726 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-16
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 77  AKQPAERKRSAPSEPKAKKSRTEKRGKKD--KDPNAPKRPPTAFFVFMDDFRKSYKEANP 136
           AK  AE + +     K   ++   +G K   KDPN PKRP +AFFVFM+DFR +YKE +P
Sbjct: 4   AKSKAETRST-----KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 63

Query: 137 DSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVA 196
            +K V  V K GGEKWKS++D EK PY  KA + K EYEK +++ N + E+  KE EE +
Sbjct: 64  KNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-S 123

Query: 197 EKEVEEITDEE 206
           +K V E+ DE+
Sbjct: 124 DKSVSEVNDED 128

[Close]

BLAST of HG10009726 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-16
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 92  KAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWK 151
           K + + T+K  K  KDPN PKRPP+AFFVFM+DFRK+YKE +P++K V  V K GG+KWK
Sbjct: 17  KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWK 76

Query: 152 SMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITDEE 206
            +T  EK P+  KA + K EYEK L++ N +      E EE ++K   E+ D++
Sbjct: 77  QLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEE-SDKSRSEVNDDD 129

[Close]

BLAST of HG10009726 vs. ExPASy TrEMBL
Match: A0A6J1FJR0 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111444667 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.4e-91
Identity = 192/206 (93.20%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPA  A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPAAAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIR NLE+QTVEKQ QAK+PAE+KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV
Sbjct: 61  KIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ESL 180
           FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES 
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
           NAENE+DEKETEEVAEKEVEE+TDEE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of HG10009726 vs. ExPASy TrEMBL
Match: A0A6J1JX92 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.5e-91
Identity = 191/206 (92.72%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MAGGGSSKSRKRVEATPA  A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPAAAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIR NLE+QTV+KQ QAK+PAE+KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV
Sbjct: 61  KIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ESL 180
           FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES 
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
           NAENE+DEKETEEVAEKEVEE+TDEE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of HG10009726 vs. ExPASy TrEMBL
Match: A0A6J1CKD5 (high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.6e-87
Identity = 184/206 (89.32%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAV-TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPAD AV TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD
Sbjct: 19  MAGGGSSKSRKRVEATPADAAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 78

Query: 61  AKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120
           AKIRMNLESQTVEKQ QAK+ +ERKRSA SEPKAKKS+ EKRGKKD+DPNAPKRPPTAFF
Sbjct: 79  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 138

Query: 121 VFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESL 180
           +FMDDFRKSYKE +PDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE+L
Sbjct: 139 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 198

Query: 181 NAENEDDEKETEEVAEKEVEEITDEE 206
             ENEDDEKE EE AEKEVEEI+DEE
Sbjct: 199 KNENEDDEKEAEEAAEKEVEEISDEE 224

[Close]

BLAST of HG10009726 vs. ExPASy TrEMBL
Match: A0A6J1JNZ6 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.8e-84
Identity = 175/204 (85.78%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MA   SS SRKRV+A P+D A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD 
Sbjct: 43  MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDT 102

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIRMNLE+QTVEKQ QAK+PAERKRSAPSEPKA KS+T+KR KK+KDPNAPKRPPTAFF+
Sbjct: 103 KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKNKDPNAPKRPPTAFFI 162

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLN 180
           FMDD+RKS+KEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEY+KALE+ N
Sbjct: 163 FMDDYRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYKKALETQN 222

Query: 181 AENEDDEKETEEVAEKEVEEITDE 205
           AENEDDEK+TEEVAE+E EE+TDE
Sbjct: 223 AENEDDEKDTEEVAEREAEEVTDE 246

[Close]

BLAST of HG10009726 vs. ExPASy TrEMBL
Match: A0A6J1GYR9 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111458705 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 174/204 (85.29%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60
           MA   SS SRKRV+A P+D A TGPSLVRAKDGSAFARC ECGKSVP ALISMHSCSLD 
Sbjct: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60

Query: 61  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120
           KIRMNLE+QTVEKQ QAK+PAERKRSAPSEPKA KS+T+KR KKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120

Query: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLN 180
           FM+DFRKS+KEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE+ N
Sbjct: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180

Query: 181 AENEDDEKETEEVAEKEVEEITDE 205
            ENEDDEK+TEEV EKE E++TDE
Sbjct: 181 TENEDDEKDTEEVTEKEAEKVTDE 204

[Close]

BLAST of HG10009726 vs. TAIR 10
Match: AT5G23420.1 (high-mobility group box 6 )

HSP 1 Score: 171.0 bits (432), Expect = 9.8e-43
Identity = 113/202 (55.94%), Postives = 147/202 (72.77%), Query Frame = 0


Query: 8   KSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLE 67
           K RKRVEA  +  + T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NLE
Sbjct: 12  KQRKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLE 71

Query: 68  SQTVEKQAQA-KQPAERKRSAPSEPKAKK-SRTEKRGKKDKDPNAPKRPPTAFFVFMDDF 127
           +Q VE QA+A K+PAE+K++    PK K+  +T    K     N PKRP TAFF+FM DF
Sbjct: 72  AQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDF 131

Query: 128 RKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNA--EN 187
           RK++K  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LES +A  E 
Sbjct: 132 RKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEE 191

Query: 188 EDDEKETEEVAEKEVEEITDEE 206
           ED+EK++++V + E +++ D++
Sbjct: 192 EDEEKQSDDVDDAEEKQVDDDD 210

[Close]

BLAST of HG10009726 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-20
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 84  KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 143
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 144 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 203
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 204 EE 206
           E+
Sbjct: 147 ED 143

[Close]

BLAST of HG10009726 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-20
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 84  KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 143
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 144 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 203
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 204 EE 206
           E+
Sbjct: 147 ED 143

[Close]

BLAST of HG10009726 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-20
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 84  KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 143
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 144 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 203
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 204 EE 206
           E+
Sbjct: 147 ED 143

[Close]

BLAST of HG10009726 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-20
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 84  KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 143
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 144 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 203
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 204 EE 206
           E+
Sbjct: 147 ED 143

The following BLAST results are available for this feature:

BLAST of HG10009726 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550365.1	4.1e-91	93.20	high mobility group B protein 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938415.1	7.0e-91	93.20	high mobility group B protein 7-like [Cucurbita moschata]	[more]
XP_022992985.1	1.5e-90	92.72	high mobility group B protein 7-like [Cucurbita maxima]	[more]
KAG6579089.1	2.0e-90	92.72	High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004150195.1	4.5e-90	91.79	high mobility group B protein 7 [Cucumis sativus] >KAE8648379.1 hypothetical pro...	[more]

BLAST of HG10009726 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDF9	1.4e-41	55.94	High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV...	[more]
O49595	1.3e-18	50.82	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40620	3.4e-16	43.17	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P93047	7.6e-16	47.33	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	7.6e-16	48.25	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]

BLAST of HG10009726 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJR0	3.4e-91	93.20	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A6J1JX92	7.5e-91	92.72	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146...	[more]
A0A6J1CKD5	6.6e-87	89.32	high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 P...	[more]
A0A6J1JNZ6	1.8e-84	85.78	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589...	[more]
A0A6J1GYR9	1.5e-83	85.29	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]

BLAST of HG10009726 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23420.1	9.8e-43	55.94	high-mobility group box 6	[more]
AT3G51880.1	8.9e-20	50.82	high mobility group B1	[more]
AT3G51880.2	8.9e-20	50.82	high mobility group B1	[more]
AT3G51880.3	8.9e-20	50.82	high mobility group B1	[more]
AT3G51880.4	8.9e-20	50.82	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..204
None	No IPR available	PRINTS	PR00886	HIGHMOBLTY12	coord: 164..184 score: 38.45 coord: 145..164 score: 36.67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..162
None	No IPR available	PANTHER	PTHR47658:SF1	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 6..200
None	No IPR available	PANTHER	PTHR47658	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 6..200
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 111..177 e-value: 4.56408E-22 score: 83.4461
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 110..181 e-value: 4.6E-26 score: 102.6
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 111..177 e-value: 3.1E-22 score: 78.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 111..180 score: 19.634518
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 96..179 e-value: 2.2E-26 score: 94.1
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 100..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009726.1	HG10009726.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding