HG10009698 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009698
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ADP-ribosylation factor GTPase-activating protein AGD11
Location	Chr06: 9015110 .. 9015567 (+)
RNA-Seq Expression	HG10009698
Synteny	HG10009698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCTGGCATCATCGATGGGCACAGAAAACCGAAACCAGATTCGTGTATAGAGGAGCGCTTCGATTTTATAAGGTATTGCTAGCGCATCTTATTTCATATATCAAAGAATCTGAAATATTGAGGTCATTCTATTAAAGAATCACACTTCTTGTAAATTCAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAATAGTCAAAATTCTAGCGATAACTACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACTCTTCAAGCAAGAATGGTAGCCACGACAAAAGACACTATGATAAACAAACTACTAGGCATCACATCGGGCACGCATTTCGTAACAGCCGAGGAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGTAA

mRNA sequence

ATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCTGGCATCATCGATGGGCACAGAAAACCGAAACCAGATTCGTGTATAGAGGAGCGCTTCGATTTTATAAGAATCACACTTCTTGTAAATTCAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAATAGTCAAAATTCTAGCGATAACTACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACTCTTCAAGCAAGAATGGTAGCCACGACAAAAGACACTATGATAAACAAACTACTAGGCATCACATCGGGCACGCATTTCGTAACAGCCGAGGAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGTAA

Coding sequence (CDS)

ATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCTGGCATCATCGATGGGCACAGAAAACCGAAACCAGATTCGTGTATAGAGGAGCGCTTCGATTTTATAAGAATCACACTTCTTGTAAATTCAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAATAGTCAAAATTCTAGCGATAACTACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACTCTTCAAGCAAGAATGGTAGCCACGACAAAAGACACTATGATAAACAAACTACTAGGCATCACATCGGGCACGCATTTCGTAACAGCCGAGGAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGTAA

Protein sequence

MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIRITLLVNSGESMNCCNFITPIVKILAITTHLVKEVHHAPKVVTLQARMVATTKDTMINKLLGITSGTHFVTAEEEEIVTTRVLTRAALQSQDKHR

Homology

[Close]

BLAST of HG10009698 vs. NCBI nr
Match: XP_011655266.1 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGNTD+N+K+EAGIID +RKPKPDSCIEERFDFIR
Sbjct: 128 MGGNTDINRKFEAGIIDLNRKPKPDSCIEERFDFIR 163

[Close]

BLAST of HG10009698 vs. NCBI nr
Match: XP_031741080.1 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X2 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGNTD+N+K+EAGIID +RKPKPDSCIEERFDFIR
Sbjct: 118 MGGNTDINRKFEAGIIDLNRKPKPDSCIEERFDFIR 153

[Close]

BLAST of HG10009698 vs. NCBI nr
Match: XP_038876146.1 (probable ADP-ribosylation factor GTPase-activating protein AGD11 [Benincasa hispida] >XP_038876147.1 probable ADP-ribosylation factor GTPase-activating protein AGD11 [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGN DVNKKYEAGIID +RKPKPDSCIEERF+FIR
Sbjct: 128 MGGNADVNKKYEAGIIDVNRKPKPDSCIEERFEFIR 163

[Close]

BLAST of HG10009698 vs. NCBI nr
Match: XP_031741081.1 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGNTD+N+K+EAGIID +RKPKPDSCIEERFDFIR
Sbjct: 128 MGGNTDINRKFEAGIIDLNRKPKPDSCIEERFDFIR 163

[Close]

BLAST of HG10009698 vs. NCBI nr
Match: KAE8648468.1 (hypothetical protein Csa_008809 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGNTD+N+K+EAGIID +RKPKPDSCIEERFDFIR
Sbjct: 162 MGGNTDINRKFEAGIIDLNRKPKPDSCIEERFDFIR 197

[Close]

BLAST of HG10009698 vs. ExPASy Swiss-Prot
Match: Q8L7A4 (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana OX=3702 GN=AGD11 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 2   GGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           GGNT VN+++EA  ID  +KPKPDS  EER DFIR
Sbjct: 119 GGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIR 153

[Close]

BLAST of HG10009698 vs. ExPASy TrEMBL
Match: A0A0A0KTS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G457230 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGNTD+N+K+EAGIID +RKPKPDSCIEERFDFIR
Sbjct: 171 MGGNTDINRKFEAGIIDLNRKPKPDSCIEERFDFIR 206

[Close]

BLAST of HG10009698 vs. ExPASy TrEMBL
Match: A0A1S3CPM1 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503228 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGN DVN+KYEAGIID  RKPKPDSCIEERFDFIR
Sbjct: 128 MGGNIDVNRKYEAGIIDLSRKPKPDSCIEERFDFIR 163

[Close]

BLAST of HG10009698 vs. ExPASy TrEMBL
Match: A0A1S4DS36 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503228 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
          MGGN DVN+KYEAGIID  RKPKPDSCIEERFDFIR
Sbjct: 59 MGGNIDVNRKYEAGIIDLSRKPKPDSCIEERFDFIR 94

[Close]

BLAST of HG10009698 vs. ExPASy TrEMBL
Match: A0A6J1JL08 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487847 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGN DVNKKYEAGIID  RKPKPDSCIEERF+FIR
Sbjct: 124 MGGNADVNKKYEAGIIDLTRKPKPDSCIEERFEFIR 159

[Close]

BLAST of HG10009698 vs. ExPASy TrEMBL
Match: A0A6J1HGX8 (probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464229 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1   MGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           MGGN DVNKKYEAGIID  RKPKPDSCIEERF+FIR
Sbjct: 124 MGGNADVNKKYEAGIIDLTRKPKPDSCIEERFEFIR 159

[Close]

BLAST of HG10009698 vs. TAIR 10
Match: AT3G07940.1 (Calcium-dependent ARF-type GTPase activating protein family )

HSP 1 Score: 48.5 bits (114), Expect = 4.7e-06
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 2   GGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIR 37
           GGNT VN+++EA  ID  +KPKPDS  EER DFIR
Sbjct: 119 GGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIR 153

The following BLAST results are available for this feature:

BLAST of HG10009698 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655266.1	3.2e-09	86.11	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 [Cuc...	[more]
XP_031741080.1	3.2e-09	86.11	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X2 [Cuc...	[more]
XP_038876146.1	3.2e-09	88.89	probable ADP-ribosylation factor GTPase-activating protein AGD11 [Benincasa hisp...	[more]
XP_031741081.1	3.2e-09	86.11	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Cuc...	[more]
KAE8648468.1	3.2e-09	86.11	hypothetical protein Csa_008809 [Cucumis sativus]	[more]

BLAST of HG10009698 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7A4	6.6e-05	65.71	Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis ...	[more]

BLAST of HG10009698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTS8	1.6e-09	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G457230 PE=4 SV=1	[more]
A0A1S3CPM1	3.5e-09	88.89	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 OS=C...	[more]
A0A1S4DS36	3.5e-09	88.89	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X2 OS=C...	[more]
A0A6J1JL08	4.6e-09	88.89	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 OS=C...	[more]
A0A6J1HGX8	4.6e-09	88.89	probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 OS=C...	[more]

BLAST of HG10009698 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07940.1	4.7e-06	65.71	Calcium-dependent ARF-type GTPase activating protein family	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009698.1	HG10009698.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0005543	phospholipid binding