HG10009664 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009664
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box/kelch-repeat protein At4g19930-like
Location	Chr06: 8640193 .. 8640537 (+)
RNA-Seq Expression	HG10009664
Synteny	HG10009664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGTGGGTATTAGAGGATTACCAGAATCAAAAGTGGGTTAAGGAACAAAGTTTCCAATACGACATGTCGGATTCAGATATCGACTGTCGTCTTCATCCCTTGGGGACGGTGACAAATGAGGGTGGTGAACAGATTTTACTGTTCAAACCCACTGGCAAAAATATGGATCGCCAACAACTTGGACGGCAGCTGCTTTACTACGACATGAAACGACGGCGTTTTCATGGAGCTGAGATTGCTGGTCTGTCTCAATGGTTGTCGTCTAATGATGTTACAGATTTTAGTTTTGATGTTTACGAAGAGAATATTATGAGTTTGTCCTCTATTTTGGGTGCTTAG

mRNA sequence

ATGGAGATGTGGGTATTAGAGGATTACCAGAATCAAAAGTGGGTTAAGGAACAAAGTTTCCAATACGACATGTCGGATTCAGATATCGACTGTCGTCTTCATCCCTTGGGGACGGTGACAAATGAGGGTGGTGAACAGATTTTACTGTTCAAACCCACTGGCAAAAATATGGATCGCCAACAACTTGGACGGCAGCTGCTTTACTACGACATGAAACGACGGCGTTTTCATGGAGCTGAGATTGCTGGTCTGTCTCAATGGTTGTCGTCTAATGATGTTACAGATTTTAGTTTTGATGTTTACGAAGAGAATATTATGAGTTTGTCCTCTATTTTGGGTGCTTAG

Coding sequence (CDS)

ATGGAGATGTGGGTATTAGAGGATTACCAGAATCAAAAGTGGGTTAAGGAACAAAGTTTCCAATACGACATGTCGGATTCAGATATCGACTGTCGTCTTCATCCCTTGGGGACGGTGACAAATGAGGGTGGTGAACAGATTTTACTGTTCAAACCCACTGGCAAAAATATGGATCGCCAACAACTTGGACGGCAGCTGCTTTACTACGACATGAAACGACGGCGTTTTCATGGAGCTGAGATTGCTGGTCTGTCTCAATGGTTGTCGTCTAATGATGTTACAGATTTTAGTTTTGATGTTTACGAAGAGAATATTATGAGTTTGTCCTCTATTTTGGGTGCTTAG

Protein sequence

MEMWVLEDYQNQKWVKEQSFQYDMSDSDIDCRLHPLGTVTNEGGEQILLFKPTGKNMDRQQLGRQLLYYDMKRRRFHGAEIAGLSQWLSSNDVTDFSFDVYEENIMSLSSILGA

Homology

[Close]

BLAST of HG10009664 vs. NCBI nr
Match: XP_022146376.1 (F-box/kelch-repeat protein At4g19930-like [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MEMWVLEDYQNQKWV--KEQSFQYDMSDSDID---CRLH-PLGTVTNEGGEQILLFKPTG 60
           +EMWVL+DYQN  WV  KE +FQYDMS  D D    RL  PLG+                
Sbjct: 225 IEMWVLKDYQNHIWVQLKEATFQYDMSSEDDDHCSSRLPLPLGS---------------- 284

Query: 61  KNMDRQQLGRQLLYYDMKRRRFHGAEIAGLSQWLSSND--VTDFSFDVYEENIMSLSSIL 113
                   G +LLYYD+KRRRF G EI GLS+WLS+ND  VTD SFD YEENI++LSS++
Sbjct: 285 --------GPRLLYYDIKRRRFRGVEIRGLSEWLSANDVAVTDCSFDAYEENIVTLSSLI 320

[Close]

BLAST of HG10009664 vs. ExPASy TrEMBL
Match: A0A6J1CZ64 (F-box/kelch-repeat protein At4g19930-like OS=Momordica charantia OX=3673 GN=LOC111015605 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MEMWVLEDYQNQKWV--KEQSFQYDMSDSDID---CRLH-PLGTVTNEGGEQILLFKPTG 60
           +EMWVL+DYQN  WV  KE +FQYDMS  D D    RL  PLG+                
Sbjct: 225 IEMWVLKDYQNHIWVQLKEATFQYDMSSEDDDHCSSRLPLPLGS---------------- 284

Query: 61  KNMDRQQLGRQLLYYDMKRRRFHGAEIAGLSQWLSSND--VTDFSFDVYEENIMSLSSIL 113
                   G +LLYYD+KRRRF G EI GLS+WLS+ND  VTD SFD YEENI++LSS++
Sbjct: 285 --------GPRLLYYDIKRRRFRGVEIRGLSEWLSANDVAVTDCSFDAYEENIVTLSSLI 320

[Close]

BLAST of HG10009664 vs. ExPASy TrEMBL
Match: A0A2P2K4Y2 (F-box protein At5g62510-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 1   MEMWVLEDYQNQKWVKE-QSFQYDMSDSDIDCRLHPLGTVTNEGGEQILLFKPTGKNMDR 60
           ME+WVL+DYQ   WVK+   F +D ++S    R  P GT+ N  GE +LL   +  +M  
Sbjct: 283 MELWVLDDYQKHVWVKDCIKFPFDWTESG---RPIPAGTIHN--GELLLLPILSVSSM-- 342

Query: 61  QQLGRQLLYYDMKRRRFHGAEIAGLSQWL--SSNDVTDFSFDVYEENIMSLSS-ILG 114
                 +L+YDMKRR F   E++GL +     S  +T      YEE+IM+L   ILG
Sbjct: 343 -----SVLFYDMKRRSFRRVEVSGLPEHFLPISQRITS-----YEESIMALGGRILG 382

The following BLAST results are available for this feature:

BLAST of HG10009664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146376.1	1.7e-17	51.67	F-box/kelch-repeat protein At4g19930-like [Momordica charantia]	[more]

BLAST of HG10009664 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZ64	8.0e-18	51.67	F-box/kelch-repeat protein At4g19930-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A2P2K4Y2	2.7e-05	39.32	F-box protein At5g62510-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of HG10009664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013187	F-box associated domain, type 3	PFAM	PF08268	FBA_3	coord: 1..49 e-value: 4.2E-5 score: 23.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009664.1	HG10009664.1	mRNA