HG10009655 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009655
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 8545597 .. 8545993 (+)
RNA-Seq Expression	HG10009655
Synteny	HG10009655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGATGGTATGCAAATTAGAAGAGAGGAAGGAAACTATGAAATTATCAAACCAAATTGCAATGACCAAACTCTCAACTTCTTTCACTCTTCCAACCATAATCTTAAAATCAATATTGTTTTTGTCTTTGAACAGTCTTACAATCCTTGTGTTATTTGCAGGCAGTGCAGTGGGGACTGTGATTTTTCATGGCCTTCCTTCTTCTGCCATTGATGCCTTTATTATCTCAATTGTCTTTGCTTTTTCAGGTGCTTTAAGTGCTCTTTTGGTTCCTCAAAGGCAAAACTTAGCAAAATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGACTGTATCGTACACTCATTCTTGGCAAACCTCACTAG

mRNA sequence

ATGGAAGATGATGGCAGTGCAGTGGGGACTGTGATTTTTCATGGCCTTCCTTCTTCTGCCATTGATGCCTTTATTATCTCAATTGTCTTTGCTTTTTCAGGTGCTTTAAGTGCTCTTTTGGTTCCTCAAAGGCAAAACTTAGCAAAATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGACTGTATCGTACACTCATTCTTGGCAAACCTCACTAG

Coding sequence (CDS)

ATGGAAGATGATGGCAGTGCAGTGGGGACTGTGATTTTTCATGGCCTTCCTTCTTCTGCCATTGATGCCTTTATTATCTCAATTGTCTTTGCTTTTTCAGGTGCTTTAAGTGCTCTTTTGGTTCCTCAAAGGCAAAACTTAGCAAAATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGACTGTATCGTACACTCATTCTTGGCAAACCTCACTAG

Protein sequence

MEDDGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMASALLLLIWGLYRTLILGKPH

Homology

[Close]

BLAST of HG10009655 vs. NCBI nr
Match: KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 3  DDGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMASA 62
          ++GSAVGTV+FHGL SSAIDAF+ISIVFAFSGALSALLVPQR NLAKFCA+YSL SMASA
Sbjct: 2  ENGSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASA 61

Query: 63 LLLLIWGLYRTLILGKPH 81
          LLLLIWGLY TLILGK H
Sbjct: 62 LLLLIWGLYHTLILGKAH 79

[Close]

BLAST of HG10009655 vs. NCBI nr
Match: KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 5   GSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMASALL 64
           GSAVGTVIFHG PSSAIDAFIISIVFAFSGALSALLVPQR  LA+FCALYSLAS+ASALL
Sbjct: 53  GSAVGTVIFHGFPSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALL 112

Query: 65  LLIWGLYRTLILGK 79
           LLIWGLY TLILGK
Sbjct: 113 LLIWGLYHTLILGK 126

[Close]

BLAST of HG10009655 vs. NCBI nr
Match: KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 5   GSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMASALL 64
           GSA G VIFH LPSS IDAF+ISI FAFSGALSALLVPQR NLA FCALYSLASMASALL
Sbjct: 41  GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALL 100

Query: 65  LLIWGLYRTLILGK 79
           LLIWGLY + +LGK
Sbjct: 101 LLIWGLYHSFVLGK 114

[Close]

BLAST of HG10009655 vs. NCBI nr
Match: KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 6.6e-13
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 4   DGSAVGTVIFHGL--PSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMAS 63
           +G  VG +IF GL  PSSA DAF++SI FAF GAL ALL+P + NLA F  LYS+ASMAS
Sbjct: 42  EGGGVG-LIFDGLSNPSSAFDAFVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMAS 101

Query: 64  ALLLLIWGLYRTLILGK 79
           ALLLLIWGLY + + G+
Sbjct: 102 ALLLLIWGLYYSFVHGR 117

[Close]

BLAST of HG10009655 vs. NCBI nr
Match: KAG6601352.1 (hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-07
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 4   DGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLV-PQRQNLAKFCALYSLASMASA 63
           +G+ V TVIF GLPS+   AF++S V AFSGA +AL++   +  +A+FC+ YS+A MASA
Sbjct: 59  NGNPVPTVIFKGLPST-FHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASA 118

Query: 64  LLLLIWGLYRTL 75
           ++LLIW +Y+T+
Sbjct: 119 VVLLIWAVYQTV 129

[Close]

BLAST of HG10009655 vs. ExPASy TrEMBL
Match: A0A5A7U2V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00460 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.7e-27
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 3  DDGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMASA 62
          ++GSAVGTV+FHGL SSAIDAF+ISIVFAFSGALSALLVPQR NLAKFCA+YSL SMASA
Sbjct: 2  ENGSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASA 61

Query: 63 LLLLIWGLYRTLILGKPH 81
          LLLLIWGLY TLILGK H
Sbjct: 62 LLLLIWGLYHTLILGKAH 79

[Close]

BLAST of HG10009655 vs. ExPASy TrEMBL
Match: A0A0A0KLQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.3e-26
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 5   GSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQRQNLAKFCALYSLASMASALL 64
           GSAVGTVIFHG PSSAIDAFIISIVFAFSGALSALLVPQR  LA+FCALYSLAS+ASALL
Sbjct: 53  GSAVGTVIFHGFPSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALL 112

Query: 65  LLIWGLYRTLILGK 79
           LLIWGLY TLILGK
Sbjct: 113 LLIWGLYHTLILGK 126

[Close]

BLAST of HG10009655 vs. ExPASy TrEMBL
Match: A0A6J1JTM5 (uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 36/72 (50.00%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 4   DGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLV-PQRQNLAKFCALYSLASMASA 63
           +G+ V T+IF GLPS+   AF++S V AFSGA +AL++   +  +A+FC+ YS+A MASA
Sbjct: 97  NGNPVPTIIFKGLPST-FHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASA 156

Query: 64  LLLLIWGLYRTL 75
           ++LLIW +Y+T+
Sbjct: 157 VVLLIWAVYQTV 167

[Close]

BLAST of HG10009655 vs. ExPASy TrEMBL
Match: A0A4S4DFW4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_002068 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 3   DDGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQR---QNLAKFCALYSLASM 62
           ++G+ V TVIF+G+PSS   AF++S+++AF+GAL+ALL+        LA+FC L S+  M
Sbjct: 49  ENGNPVPTVIFNGIPSSGFHAFVVSLLYAFTGALTALLIHDTTAGSFLARFCELVSILCM 108

Query: 63  ASALLLLIWGLYRTLILGKP 80
            SA+ L +W L+ TL   KP
Sbjct: 109 TSAVSLFVWSLF-TLSFPKP 127

[Close]

BLAST of HG10009655 vs. ExPASy TrEMBL
Match: A0A7J7HBL4 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_011257 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 3   DDGSAVGTVIFHGLPSSAIDAFIISIVFAFSGALSALLVPQR---QNLAKFCALYSLASM 62
           ++G+ V TVIF+G+PSS   AF++S+++AF+GAL+ALL+        LA+FC L S+  M
Sbjct: 49  ENGNPVPTVIFNGIPSSGFHAFVVSLLYAFTGALTALLIHDTTAGSFLARFCELVSILCM 108

Query: 63  ASALLLLIWGLYRTLILGKP 80
            SA+ L +W L+ TL   KP
Sbjct: 109 TSAVSLFVWSLF-TLSFPKP 127

The following BLAST results are available for this feature:

BLAST of HG10009655 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050243.1	1.8e-26	87.18	hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816...	[more]
KGN49809.1	1.5e-25	91.89	hypothetical protein Csa_004648 [Cucumis sativus]	[more]
KAG6579131.1	1.2e-22	83.78	hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601931.1	6.6e-13	63.64	hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601352.1	2.4e-07	51.39	hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10009655 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2V8	8.7e-27	87.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KLQ9	7.3e-26	91.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1	[more]
A0A6J1JTM5	1.5e-07	50.00	uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762...	[more]
A0A4S4DFW4	2.6e-07	46.25	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0020...	[more]
A0A7J7HBL4	2.6e-07	46.25	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_011257 PE=4 SV=1	[more]

BLAST of HG10009655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009655.1	HG10009655.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane